>SNX2_MOUSE (Q9CWK8) Sorting nexin-2|
          Length = 519

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
 Frame = -1

Query: 602 DYVRAVQSIKATMLDRANAFRQHFDLDQERKYKELNLEKMKFMN-PXXXXXXXXXXXELK 426
           DY+R + ++K     R   +++  D       K     KM   N P           E +
Sbjct: 395 DYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIREWE 454

Query: 425 AASEEATKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVLPK 246
           A  ++  + +E I   +  E+ RF++++  D      ++ +   +  + +   W + LP+
Sbjct: 455 AKVQQGERDFEQISKTIRKEVGRFEKERVKDFKAVIIKYLESLVQTQQQLIKYWEAFLPE 514

Query: 245 LEA 237
            +A
Sbjct: 515 AKA 517

>SNX2_HUMAN (O60749) Sorting nexin-2|
          Length = 519

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
 Frame = -1

Query: 602 DYVRAVQSIKATMLDRANAFRQHFDLDQER-KYKELNLEKMKFMNPXXXXXXXXXXXELK 426
           DY+R + ++K     R   +++  D      K +E   + M    P           E +
Sbjct: 395 DYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWE 454

Query: 425 AASEEATKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVLPK 246
           A  ++  + +E I   +  E+ RF++++  D      ++ +   +  + +   W + LP+
Sbjct: 455 AKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPE 514

Query: 245 LEA 237
            +A
Sbjct: 515 AKA 517

>SNX1_MOUSE (Q9WV80) Sorting nexin-1|
          Length = 522

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
 Frame = -1

Query: 602 DYVRAVQSIKATMLDRANAFRQHFDLDQERKYKELNLEKMKFMN-PXXXXXXXXXXXELK 426
           DY+R +  ++A    R   +++  D     + K  +  ++ + N P           E +
Sbjct: 398 DYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRESEARLLWANKPDKLQQAKDEITEWE 457

Query: 425 AASEEATKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVLPK 246
           +   +  + +E I +V+  E+ RF+++K+ D      ++ +      + +A  W + LP+
Sbjct: 458 SRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQLAKYWEAFLPE 517

Query: 245 LEACS 231
            +A S
Sbjct: 518 AKAIS 522

>ZN11A_HUMAN (P17013) Zinc finger protein 11A (Zinc finger protein KOX2)|
           (Fragments)
          Length = 301

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
 Frame = +1

Query: 13  FNS*X*LVENLSYRVHTHTVKKRCQYNNRSIVNHHFSSI-HEPLS----NWAGKNQPKTQ 177
           FN+   L+ N+ +   THT +K     NR+ ++HH  ++ HE +     N+      +T 
Sbjct: 31  FNACGKLLLNIKHD-ETHTQEKNEVLKNRNTLSHHEETLQHEKIQTLEHNFEYSICQETL 89

Query: 178 RANHYFNTTGKHSFDYEAEQASSFGRTLRHASAMSLANFA*PFANSWNASPISAVFC 348
                FNT  + + +      + FGRTL  +S++     +    N +  S      C
Sbjct: 90  LEKAVFNTQKRENAEENNCDYNEFGRTLCDSSSLLFHQISPSRDNHYEFSDCEKFLC 146

>ZN33A_HUMAN (Q06730) Zinc finger protein 33A (Zinc finger protein KOX31) (Zinc|
           finger and ZAK-associated protein with KRAB domain)
           (ZZaPK)
          Length = 810

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
 Frame = +1

Query: 13  FNS*X*LVENLSYRVHTHTVKKRCQYNNRSIVNHHFSSI-HEPLS----NWAGKNQPKTQ 177
           FN+   L+ N+ +   THT +K     NR+ ++HH  ++ HE +     N+      +T 
Sbjct: 169 FNACGKLLLNIKHD-ETHTQEKNEVLKNRNTLSHHEETLQHEKIQTLEHNFEYSICQETL 227

Query: 178 RANHYFNTTGKHSFDYEAEQASSFGRTLRHASAMSLANFA*PFANSWNASPISAVFC 348
                FNT  + + +      + FGRTL  +S++     +    N +  S      C
Sbjct: 228 LEKAVFNTQKRENAEENNCDYNEFGRTLCDSSSLLFHQISPSRDNHYEFSDCEKFLC 284

>SODM_CHLRE (Q42684) Superoxide dismutase [Mn], mitochondrial precursor (EC|
           1.15.1.1)
          Length = 218

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -1

Query: 407 TKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRS 258
           TK ++  V+ +N  L +F E K  D+GL     A G  KL KD+A   R+
Sbjct: 29  TKHHQTYVNNLNAALDKFPELK--DLGLVDLNKAVGTDKLPKDVATVIRN 76

>YQEK_BACSU (P54456) Protein yqeK|
          Length = 186

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -1

Query: 401 RYEHIVSVMND--ELA-RF-QEQKTADIGLAFHEFAKGQAK 291
           RY H V VMN   ELA RF  + K A+I   FH++AK + K
Sbjct: 18  RYIHTVGVMNTAIELAERFGADSKKAEIAAIFHDYAKFRPK 58

>SNX41_YARLI (Q6C9X0) Sorting nexin-41|
          Length = 570

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -1

Query: 431 LKAASEEATKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVL 252
           L+ A E A K        +  +L RF+ ++ AD+      F K     AK   D W+S  
Sbjct: 505 LEQALEVAQKDIVVANESVEKDLERFRAEREADLKCMIRAFLKCHIDWAKQNLDTWQSAQ 564

Query: 251 PKLEA 237
            ++E+
Sbjct: 565 AEVES 569


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,626,768
Number of Sequences: 219361
Number of extensions: 1450151
Number of successful extensions: 3687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3687
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)