ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC005737.1| Homo sapiens chromosome 16, BAC clone 97H22 (LANL... 40 1.1
2emb|AL935280.12| Zebrafish DNA sequence from clone DKEY-261J4, c... 40 1.1
3gb|AC155904.1| Loxodonta africana, clone Loxodonta africana-4339... 40 1.1
4gb|AC105080.8| Mus musculus chromosome 3, clone RP24-313N2, comp... 38 4.4
5gb|AC119897.8| Mus musculus chromosome 1, clone RP24-227F14, com... 38 4.4
6emb|BX897727.17| Zebrafish DNA sequence from clone DKEY-90A13 in... 38 4.4
7gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 ma... 38 4.4
8emb|AL035079.14|HS53C18 Human DNA sequence from clone RP1-53C18 ... 38 4.4
9gb|AC117661.20| Mus musculus chromosome 6, clone RP23-343P1, com... 38 4.4
10ref|XM_694157.1| PREDICTED: Danio rerio similar to adenylyl cycl... 38 4.4
11ref|XM_694076.1| PREDICTED: Danio rerio similar to glucose-6-pho... 38 4.4
12gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, compl... 38 4.4
13dbj|AK076295.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 38 4.4
14gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, compl... 38 4.4
15emb|AL807769.8| Zebrafish DNA sequence from clone CH211-197G8, c... 38 4.4
16gb|AC174449.2| Mus musculus BAC clone RP23-338O19 from chromosom... 38 4.4

>gb|AC005737.1| Homo sapiens chromosome 16, BAC clone 97H22 (LANL), complete sequence
          Length = 174098

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    gcaacaacaaaaacactggg 41
             ||||||||||||||||||||
Sbjct: 90455 gcaacaacaaaaacactggg 90436



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>emb|AL935280.12| Zebrafish DNA sequence from clone DKEY-261J4, complete sequence
          Length = 221563

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     gcacgtccgcaacaacaaaaacac 37
              |||||||||||| |||||||||||
Sbjct: 200417 gcacgtccgcaaaaacaaaaacac 200440



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>gb|AC155904.1| Loxodonta africana, clone Loxodonta africana-4339475P7, complete
             sequence
          Length = 38646

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaacactgggatttgaagcc 51
             ||||||||||||||||||||
Sbjct: 19645 aaacactgggatttgaagcc 19664



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>gb|AC105080.8| Mus musculus chromosome 3, clone RP24-313N2, complete sequence
          Length = 195212

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    aacaaaaacactgggattt 45
             |||||||||||||||||||
Sbjct: 84378 aacaaaaacactgggattt 84396



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>gb|AC119897.8| Mus musculus chromosome 1, clone RP24-227F14, complete sequence
          Length = 195375

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    caacaaaaacactgggatttgaa 48
             |||||||| ||||||||||||||
Sbjct: 93867 caacaaaagcactgggatttgaa 93889



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>emb|BX897727.17| Zebrafish DNA sequence from clone DKEY-90A13 in linkage group 23,
              complete sequence
          Length = 236277

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     aacaaaaacactgggattt 45
              |||||||||||||||||||
Sbjct: 143577 aacaaaaacactgggattt 143559



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>gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 map 1, complete sequence
          Length = 211776

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    acaaaaacactgggatttg 46
             |||||||||||||||||||
Sbjct: 93169 acaaaaacactgggatttg 93151



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>emb|AL035079.14|HS53C18 Human DNA sequence from clone RP1-53C18 on chromosome 11p12-13 Contains
             the CAT gene for Catalase, the first coding exon of the
             ortholog of rat Ankyrin repeat protein CCA3, a Recepin
             partial pseudogene, and a pseudogene similar to part of
             DNAJ proteins (HIRIP4, DNJ3, CPR3). Contains two CpG
             islands, complete sequence
          Length = 136284

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    caacaacaaaaacactggg 41
             |||||||||||||||||||
Sbjct: 65435 caacaacaaaaacactggg 65417



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>gb|AC117661.20| Mus musculus chromosome 6, clone RP23-343P1, complete sequence
          Length = 180209

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    gcaacaacaaaaacactgg 40
             |||||||||||||||||||
Sbjct: 79051 gcaacaacaaaaacactgg 79069



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>ref|XM_694157.1| PREDICTED: Danio rerio similar to adenylyl cyclase type VI
          (LOC570652), mRNA
          Length = 1946

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 27 aacaaaaacactgggattt 45
          |||||||||||||||||||
Sbjct: 36 aacaaaaacactgggattt 18



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>ref|XM_694076.1| PREDICTED: Danio rerio similar to glucose-6-phosphate
          dehydrogenase (LOC570579), mRNA
          Length = 2850

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 27 aacaaaaacactgggattt 45
          |||||||||||||||||||
Sbjct: 36 aacaaaaacactgggattt 18



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>gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, complete sequence
          Length = 150339

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    caacaacaaaaacactggg 41
             |||||||||||||||||||
Sbjct: 11062 caacaacaaaaacactggg 11080



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>dbj|AK076295.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
           library, clone:4632427F01 product:a disintegrin-like and
           metalloprotease (reprolysin type) with thrombospondin
           type 1 motif, 4, full insert sequence
          Length = 3025

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  acaaaaacactgggatttg 46
           |||||||||||||||||||
Sbjct: 245 acaaaaacactgggatttg 263



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>gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, complete sequence
          Length = 79230

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    caacaacaaaaacactggg 41
             |||||||||||||||||||
Sbjct: 12985 caacaacaaaaacactggg 12967



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>emb|AL807769.8| Zebrafish DNA sequence from clone CH211-197G8, complete sequence
          Length = 188344

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     aacaaaaacactgggattt 45
              |||||||||||||||||||
Sbjct: 104854 aacaaaaacactgggattt 104836



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>gb|AC174449.2| Mus musculus BAC clone RP23-338O19 from chromosome 6, complete sequence
          Length = 217169

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    gcaacaacaaaaacactgg 40
             |||||||||||||||||||
Sbjct: 45918 gcaacaacaaaaacactgg 45936


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 905,133
Number of Sequences: 3902068
Number of extensions: 905133
Number of successful extensions: 83988
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83959
Number of HSP's gapped (non-prelim): 29
length of query: 100
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 79
effective length of database: 17,151,101,840
effective search space: 1354937045360
effective search space used: 1354937045360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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