ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11l05 |
|---|---|
| Clone Library Name | barley_pub |
>CJ022_MOUSE (Q6PDY2) Protein C10orf22 homolog| Length = 256 Score = 33.1 bits (74), Expect = 0.56 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Frame = -1 Query: 397 PGLRGAFKTLDDTQKLKAYDNIIAGSGHGNPMVTYSFE----DLGKVEIDSGT--SKVNI 236 PG+ G K L T ++ D + G+GH P FE L + + G S+ Sbjct: 103 PGMHGMLKVLYGTVRISCMDKLDTGAGHRRPPPEQQFEPPLQPLEREAVRPGVLRSRAEY 162 Query: 235 TDGLSGCRVAPMTDGL 188 T+ C + P D L Sbjct: 163 TEASGPCVLTPHRDNL 178
>UBP9_YEAST (P39967) Ubiquitin carboxyl-terminal hydrolase 9 (EC 3.1.2.15)| (Ubiquitin thioesterase 9) (Ubiquitin-specific-processing protease 9) (Deubiquitinating enzyme 9) Length = 754 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Frame = -1 Query: 502 EDAEKFEHFIPNQFSEWLKGN--KIKFQDLVADDTAKPGLRGAFK-TLDDTQKLKAYDNI 332 +DA +F +F+ N FSE+++ N +++F D++ + FK TL + K DNI Sbjct: 434 QDAHEFLNFLLNDFSEYIQRNNPRMRFGPQKTDNSNDNFITDLFKGTLTNRIKCLTCDNI 493 Query: 331 IAGSGHGNPMVTYSFEDLGKVEID 260 + P + + E G E D Sbjct: 494 ---TSRDEPFLDFPIEVQGDEETD 514
>PUR4_XANAC (Q8PGR7) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1348 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 415 ADDTAKPGLRGAFKTLDDTQKLKAYDNIIAGSGHGNPMVTY 293 ADDTA P G LDD Q+L+++ +I + ++ Y Sbjct: 899 ADDTALPAFGGEVPDLDDAQRLRSFFELIRDARDSGLLLAY 939
>CSP_DROME (Q03751) Cysteine string protein| Length = 249 Score = 25.0 bits (53), Expect(2) = 2.4 Identities = 10/34 (29%), Positives = 14/34 (41%) Frame = -2 Query: 186 NSLALLRTTTQTYELIIPECYYSTTAAIFCCCCC 85 N A T+ + ++ C T CCCCC Sbjct: 96 NVNAYFVVTSPAVKAVVICCAVITGCCCCCCCCC 129 Score = 24.6 bits (52), Expect(2) = 2.4 Identities = 6/7 (85%), Positives = 7/7 (100%) Frame = -2 Query: 99 CCCCCHF 79 CCCCC+F Sbjct: 127 CCCCCNF 133
>PUR4_XANCP (Q8PCQ7) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1348 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 415 ADDTAKPGLRGAFKTLDDTQKLKAYDNIIAGSGHGNPMVTY 293 ADD+A P G LDD Q+L+ + +I + G ++ Y Sbjct: 899 ADDSALPAFGGETPDLDDPQRLRQFFELIRDAREGGLLLAY 939
>DNJ5G_HUMAN (Q8N7S2) DnaJ homolog subfamily C member 5G (Gamma cysteine string| protein) (Gamma-CSP) Length = 189 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%) Frame = -2 Query: 150 YELIIPECYYST--------TAAIFCCCCCHFVHSLNNTP 55 Y I+ C++ T T FCCCCC +L P Sbjct: 115 YYFILNSCWFKTLVILCTLLTCCCFCCCCCFCCGALKPPP 154
>P4HA1_PONPY (Q5RAG8) Prolyl 4-hydroxylase alpha-1 subunit precursor (EC| 1.14.11.2) (4-PH alpha-1) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-1 subunit) Length = 534 Score = 30.0 bits (66), Expect = 4.8 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = -1 Query: 562 QQKEAQCLALEAGRYKKAALEDAEKFEHFIPNQFSEWLKGNKIKFQDLVAD-------DT 404 +QK+ C + R K L A+ Q EW K I+F D+++D D Sbjct: 304 RQKKLFCRYHDGNRNPKFILAPAK--------QEDEWDKPRIIRFHDIISDAEIEIVKDL 355 Query: 403 AKPGLRGAFKTLDDTQKLKAYDNIIAG----SGHGNPMVT 296 AKP LR A + T L+ I+ SG+ NP+V+ Sbjct: 356 AKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVS 395
>P4HA1_HUMAN (P13674) Prolyl 4-hydroxylase alpha-1 subunit precursor (EC| 1.14.11.2) (4-PH alpha-1) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-1 subunit) Length = 534 Score = 30.0 bits (66), Expect = 4.8 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Frame = -1 Query: 562 QQKEAQCLALEAGRYKKAALEDAEKFEHFIPNQFSEWLKGNKIKFQDLVAD-------DT 404 +QK+ C + R K L A+ Q EW K I+F D+++D D Sbjct: 304 RQKKLFCRYHDGNRNPKFILAPAK--------QEDEWDKPRIIRFHDIISDAEIEIVKDL 355 Query: 403 AKPGLRGAFKTLDDTQKLKAYDNIIAG----SGHGNPMVT 296 AKP LR A + T L+ I+ SG+ NP+V+ Sbjct: 356 AKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVS 395
>TXK_HUMAN (P42681) Tyrosine-protein kinase TXK (EC 2.7.10.2)| Length = 527 Score = 30.0 bits (66), Expect = 4.8 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -2 Query: 123 YSTTAAIFCCCCC 85 Y+T ++FCCCCC Sbjct: 6 YNTIQSVFCCCCC 18
>MRAY_GEOSL (Q748D3) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 358 Score = 29.3 bits (64), Expect = 8.1 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -1 Query: 310 NPMVTYSFEDLGKVEIDSGTSKVNITDGLSGCRVAPM 200 +P ++Y + G + + ++ VN+TDGL G + P+ Sbjct: 167 HPDLSYLYIPFGMLVVVGASNAVNLTDGLDGLAIGPV 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,625,319 Number of Sequences: 219361 Number of extensions: 1555471 Number of successful extensions: 3815 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3698 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3792 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
