| Clone Name | rbags11l02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109595.1| Zea mays CL222_1 mRNA sequence Length = 1600 Score = 87.7 bits (44), Expect = 4e-14 Identities = 109/131 (83%), Gaps = 6/131 (4%) Strand = Plus / Minus Query: 482 caaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgcgagtct 541 |||||||||||||||| || ||||| || ||||| |||||||||||||| || |||| Sbjct: 1275 caaagcatgcctccatccgcgacccagtgcgcaaaccggtcagaatagtcccgaacgtct 1216 Query: 542 gagagctggctgcttgagcggga------caggtcatcccttccctcatcattgtgtcct 595 |||| |||||||||||| ||||| || ||||||||||||||||||| |||||||| Sbjct: 1215 gagacctggctgcttgaacgggaaagatccatgtcatcccttccctcatcagtgtgtcct 1156 Query: 596 ggctcactgta 606 | |||||||| Sbjct: 1155 tgttcactgta 1145
>ref|XM_470554.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2340 Score = 65.9 bits (33), Expect = 2e-07 Identities = 160/200 (80%), Gaps = 8/200 (4%) Strand = Plus / Minus Query: 476 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 535 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 2339 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 2280 Query: 536 gagtctgagagctggctgcttgagcgggacag------gtcatcccttccctcatcattg 589 |||||| | |||||||||||||| ||||| |||||| ||||||||||||||| Sbjct: 2279 atgtctgacatttggctgcttgagcgtgacagatctgtgtcatctcttccctcatcattg 2220 Query: 590 tgtcctggctcactgtaagtagtagtagatccaacactgataccatccaatgggtgagtg 649 ||||| | |||||||| | ||||| ||| ||| ||||| | ||||| |||||||| | Sbjct: 2219 tgtccctgttcactgtatgatgtagttgattcaatactgacaacatcc-atgggtgaatt 2161 Query: 650 aatgaagtgatgacctctca 669 ||| ||||||||||||||| Sbjct: 2160 gatg-agtgatgacctctca 2142
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.038 Identities = 75/92 (81%) Strand = Plus / Minus Query: 476 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 535 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 4317074 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 4317015 Query: 536 gagtctgagagctggctgcttgagcgggacag 567 |||||| | |||||||||||||| ||||| Sbjct: 4317014 atgtctgacatttggctgcttgagcgtgacag 4316983
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 48.1 bits (24), Expect = 0.038 Identities = 75/92 (81%) Strand = Plus / Plus Query: 476 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 535 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 109423 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 109482 Query: 536 gagtctgagagctggctgcttgagcgggacag 567 |||||| | |||||||||||||| ||||| Sbjct: 109483 atgtctgacatttggctgcttgagcgtgacag 109514
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.038 Identities = 75/92 (81%) Strand = Plus / Minus Query: 476 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 535 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 4317189 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 4317130 Query: 536 gagtctgagagctggctgcttgagcgggacag 567 |||||| | |||||||||||||| ||||| Sbjct: 4317129 atgtctgacatttggctgcttgagcgtgacag 4317098
>dbj|AK100037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A15, full insert sequence Length = 3741 Score = 48.1 bits (24), Expect = 0.038 Identities = 75/92 (81%) Strand = Plus / Minus Query: 476 tagtagcaaagcatgcctccattagccacccactgagcaaagcggtcagaatagtcgcgc 535 |||||||||||||||||||| | ||||||| || | ||||||||||| ||||| || Sbjct: 2918 tagtagcaaagcatgcctccgccatccacccaatgcgtgaagcggtcagagtagtcacgg 2859 Query: 536 gagtctgagagctggctgcttgagcgggacag 567 |||||| | |||||||||||||| ||||| Sbjct: 2858 atgtctgacatttggctgcttgagcgtgacag 2827
>gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, complete sequence Length = 230772 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 444 tggagatgccaccaggacaaatt 466 ||||||||||||||||||||||| Sbjct: 188892 tggagatgccaccaggacaaatt 188914
>gb|AC114404.12| Mus musculus chromosome 7, clone RP24-350D24, complete sequence Length = 188585 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 444 tggagatgccaccaggacaaatt 466 ||||||||||||||||||||||| Sbjct: 17060 tggagatgccaccaggacaaatt 17082
>gb|AY112497.1| Zea mays CL422_1 mRNA sequence Length = 801 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Minus Query: 568 gtcatcccttccctcatcattgtgtcctggctcactgta 606 ||||||||||||||||||| | || ||| |||||||||| Sbjct: 173 gtcatcccttccctcatcagtatgcccttgctcactgta 135
>ref|NM_017514.2| Homo sapiens plexin A3 (PLXNA3), mRNA Length = 6762 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 361 gcactgtgcggctgcagcttct 382 |||||||||||||||||||||| Sbjct: 2010 gcactgtgcggctgcagcttct 2031
>emb|BX936365.3| Human DNA sequence from clone WI2-81657B9 on chromosome X Contains the 3' end of the GDI1 gene for GDP dissociation inhibitor 1, the FAM50A gene for family with sequence similarity 50, member A, a novel gene (DXS9879E) gene , the PLXNA3 gene for plexin A3 and a CpG island, complete sequence Length = 39835 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 361 gcactgtgcggctgcagcttct 382 |||||||||||||||||||||| Sbjct: 22403 gcactgtgcggctgcagcttct 22424
>emb|X87852.1|HSSEXGENE H.sapiens mRNA for SEX gene Length = 6039 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 361 gcactgtgcggctgcagcttct 382 |||||||||||||||||||||| Sbjct: 2022 gcactgtgcggctgcagcttct 2043
>gb|L44140.1|HUMFLNG6PD Homo sapiens chromosome X region from filamin (FLN) gene to glucose-6-phosphate dehydrogenase (G6PD) gene, complete cds's Length = 219447 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 361 gcactgtgcggctgcagcttct 382 |||||||||||||||||||||| Sbjct: 134840 gcactgtgcggctgcagcttct 134861
>dbj|AK091340.1| Homo sapiens cDNA FLJ34021 fis, clone FCBBF2002928 Length = 2434 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atcattcattgcctttccctt 190 ||||||||||||||||||||| Sbjct: 1251 atcattcattgcctttccctt 1231
>tpg|BK001426.1| TPA: TPA_exp: Homo sapiens selenoprotein I mRNA, complete cds Length = 8084 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atcattcattgcctttccctt 190 ||||||||||||||||||||| Sbjct: 6899 atcattcattgcctttccctt 6879
>ref|NM_033505.1| Homo sapiens selenoprotein I (SELI), mRNA Length = 8091 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atcattcattgcctttccctt 190 ||||||||||||||||||||| Sbjct: 6908 atcattcattgcctttccctt 6888
>gb|AC010896.15| Homo sapiens BAC clone RP11-499P9 from 2, complete sequence Length = 188780 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atcattcattgcctttccctt 190 ||||||||||||||||||||| Sbjct: 165039 atcattcattgcctttccctt 165019
>dbj|AB051511.1| Homo sapiens mRNA for KIAA1724 protein, partial cds Length = 8082 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atcattcattgcctttccctt 190 ||||||||||||||||||||| Sbjct: 6899 atcattcattgcctttccctt 6879
>ref|XM_419464.1| PREDICTED: Gallus gallus similar to Protein kinase C, epsilon type (nPKC-epsilon) (LOC421409), mRNA Length = 2909 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 ttgattttcctttgttctag 410 |||||||||||||||||||| Sbjct: 2399 ttgattttcctttgttctag 2380
>gb|AC115236.4| Rattus norvegicus 15 BAC CH230-87I6 (Children's Hospital Oakland Research Institute) complete sequence Length = 151341 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gcctatcattcattgccttt 185 |||||||||||||||||||| Sbjct: 49158 gcctatcattcattgccttt 49139
>gb|AC139341.3| Atelerix albiventris clone LB4-464N6, complete sequence Length = 195266 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 588 tgtgtcctggctcactgtaa 607 |||||||||||||||||||| Sbjct: 84928 tgtgtcctggctcactgtaa 84947
>gb|AC004125.1|HUAC004125 Homo sapiens Chromosome 16 BAC clone CIT987SK-625P11, complete sequence Length = 194020 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 aattctttagcattagtagcaaag 486 ||||||||| |||||||||||||| Sbjct: 115886 aattctttaccattagtagcaaag 115863
>emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L9 on chromosome 22, complete sequence Length = 146438 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agctaacccttgaaaaagaa 144 |||||||||||||||||||| Sbjct: 25950 agctaacccttgaaaaagaa 25969
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gcctttgtgctgcggcgaaa 437 |||||||||||||||||||| Sbjct: 3928452 gcctttgtgctgcggcgaaa 3928471
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 atttcctttgcctatcattcattg 180 ||||||||| |||||||||||||| Sbjct: 77099 atttccttttcctatcattcattg 77076
>dbj|AB190354.1| Brassica rapa BrSRK-f2, BrSP11-f2 genes, complete cds Length = 38542 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 taaaggtgaacaaaaacata 111 |||||||||||||||||||| Sbjct: 31588 taaaggtgaacaaaaacata 31607
>gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, complete sequence Length = 171696 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cagcactgtgcggctgcagc 378 |||||||||||||||||||| Sbjct: 159255 cagcactgtgcggctgcagc 159236
>gb|AC068515.6| Homo sapiens, clone RP11-61O11, complete sequence Length = 180917 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 tattttgtttctaaaggtgaacaa 104 |||||||||||| ||||||||||| Sbjct: 46272 tattttgtttctcaaggtgaacaa 46295
>gb|AC027013.7| Homo sapiens chromosome 15, clone RP11-398J10, complete sequence Length = 196215 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 tattttgtttctaaaggtgaacaa 104 |||||||||||| ||||||||||| Sbjct: 155426 tattttgtttctcaaggtgaacaa 155449
>gb|AC090371.4| Homo sapiens chromosome 18, clone RP11-746B8, complete sequence Length = 173028 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 attgattttcctttgttcta 409 |||||||||||||||||||| Sbjct: 92960 attgattttcctttgttcta 92941
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gctgcagcttcttcttgaga 390 |||||||||||||||||||| Sbjct: 3062648 gctgcagcttcttcttgaga 3062667
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ttttgtttctaaaggtgaac 102 |||||||||||||||||||| Sbjct: 405327 ttttgtttctaaaggtgaac 405308
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 588 tgtgtcctggctcactgtaa 607 |||||||||||||||||||| Sbjct: 1220336 tgtgtcctggctcactgtaa 1220355
>gb|AC153938.4| Mus musculus 10 BAC RP24-447J10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 127914 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 666 ctcaaaagcttcttcatcac 685 |||||||||||||||||||| Sbjct: 67066 ctcaaaagcttcttcatcac 67085
>gb|AC008817.8| Homo sapiens chromosome 5 clone CTD-2122P11, complete sequence Length = 186185 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tacctaagctaacccttgaa 138 |||||||||||||||||||| Sbjct: 89124 tacctaagctaacccttgaa 89105
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ttttgtttctaaaggtgaac 102 |||||||||||||||||||| Sbjct: 432591 ttttgtttctaaaggtgaac 432572
>gb|AC106901.4| Homo sapiens BAC clone RP11-1178E6 from 2, complete sequence Length = 91323 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 638 aatgggtgagtgaatgaagt 657 |||||||||||||||||||| Sbjct: 54648 aatgggtgagtgaatgaagt 54629
>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116556 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcctttgcctatcattcatt 179 |||||||||||||||||||| Sbjct: 7786 tcctttgcctatcattcatt 7805
>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence Length = 183268 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ttttgtttctaaaggtgaac 102 |||||||||||||||||||| Sbjct: 139376 ttttgtttctaaaggtgaac 139357
>dbj|BS000091.2| Pan troglodytes chromosome 22 clone:RP43-001O17, map 22, complete sequences Length = 36755 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 638 aatgggtgagtgaatgaagt 657 |||||||||||||||||||| Sbjct: 20326 aatgggtgagtgaatgaagt 20345
>dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19 Length = 85020 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 attcttcttctgttgcttca 344 |||||||||||||||||||| Sbjct: 32980 attcttcttctgttgcttca 32961
>emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20, complete sequence Length = 139851 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 caccatcatctgcattcatt 272 |||||||||||||||||||| Sbjct: 101880 caccatcatctgcattcatt 101861
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 caaaaccaaaccacaagtca 254 |||||||||||||||||||| Sbjct: 54281 caaaaccaaaccacaagtca 54300
>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete sequence Length = 190917 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 caaaaccaaaccacaagtca 254 |||||||||||||||||||| Sbjct: 82926 caaaaccaaaccacaagtca 82945
>dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT20B10, TM0135, complete sequence Length = 96988 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cagatagatatatttccttt 165 |||||||||||||||||||| Sbjct: 28014 cagatagatatatttccttt 28033 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,299,602 Number of Sequences: 3902068 Number of extensions: 7299602 Number of successful extensions: 164884 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 164615 Number of HSP's gapped (non-prelim): 262 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)