>ref|XM_475452.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1050

 Score =  103 bits (52), Expect = 7e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                       
Query: 545 ttcattcgcggcatataactgagcaacatccttgggcatactgtagaagatgtagaatag 604
           ||||||||||||||||||||||||  ||||||  ||||||||||||||||||||||||||
Sbjct: 780 ttcattcgcggcatataactgagctgcatcctgtggcatactgtagaagatgtagaatag 721

                           
Query: 605 tgtcaaggggtgaaac 620
           ||||| | ||||||||
Sbjct: 720 tgtcatgaggtgaaac 705



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 382 ggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaa 430
           |||||| ||||||||||||  |||||| |||||| | ||||| ||||||
Sbjct: 943 ggagaataaagttgtccttaggaattgcatcccaaatgttggcatcaaa 895

>dbj|AK073521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045I15, full
            insert sequence
          Length = 3053

 Score =  103 bits (52), Expect = 7e-19
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                        
Query: 545  ttcattcgcggcatataactgagcaacatccttgggcatactgtagaagatgtagaatag 604
            ||||||||||||||||||||||||  ||||||  ||||||||||||||||||||||||||
Sbjct: 2469 ttcattcgcggcatataactgagctgcatcctgtggcatactgtagaagatgtagaatag 2410

                            
Query: 605  tgtcaaggggtgaaac 620
            ||||| | ||||||||
Sbjct: 2409 tgtcatgaggtgaaac 2394



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 382  ggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaa 430
            |||||| ||||||||||||  |||||| |||||| | ||||| ||||||
Sbjct: 2632 ggagaataaagttgtccttaggaattgcatcccaaatgttggcatcaaa 2584

>gb|AY109635.1| Zea mays CL8958_1 mRNA sequence
          Length = 644

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 93/111 (83%)
 Strand = Plus / Plus

                                                                       
Query: 327 ctaacattttggctggcggaagggaggacaggtctcttctctacagattcatattggaga 386
           |||| ||||||||  || ||||| ||||||||||||||||| || | ||| || ||||||
Sbjct: 298 ctaatattttggccagcagaaggaaggacaggtctcttctccactgcttcgtaatggaga 357

                                                              
Query: 387 acaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaaatg 437
           |||||||||||||| ||||  |||||||| | | | |||||||| ||||||
Sbjct: 358 acaaagttgtccttatgaacagtatcccagatgcttggatcaaaacaaatg 408

>ref|XM_468120.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2565

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 375  tcatattggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaa 434
            ||||| ||||||||||||||||||||  | ||||| |||||   ||| ||||||||||||
Sbjct: 2045 tcataatggagaacaaagttgtccttgcggattgtctcccagttgtttggatcaaagcaa 1986

                                
Query: 435  atgtaggatcctcgttcata 454
               || ||||||||||||||
Sbjct: 1985 ccataagatcctcgttcata 1966

>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
             complete sequence
          Length = 127642

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 540   tacagttcattcgcggcatataactgagcaacatccttgggcatactg 587
             |||| ||||||||||||||||||||||||  ||||||  |||||||||
Sbjct: 57028 tacatttcattcgcggcatataactgagctgcatcctgtggcatactg 56981



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 585   ctgtagaagatgtagaatagtgtcaaggggtgaaac 620
             ||||||||||||||||||||||||| | ||||||||
Sbjct: 56913 ctgtagaagatgtagaatagtgtcatgaggtgaaac 56878

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 540      tacagttcattcgcggcatataactgagcaacatccttgggcatactg 587
                |||| ||||||||||||||||||||||||  ||||||  |||||||||
Sbjct: 23776207 tacatttcattcgcggcatataactgagctgcatcctgtggcatactg 23776160



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 585      ctgtagaagatgtagaatagtgtcaaggggtgaaac 620
                ||||||||||||||||||||||||| | ||||||||
Sbjct: 23776092 ctgtagaagatgtagaatagtgtcatgaggtgaaac 23776057

>dbj|AK101869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070E05, full
            insert sequence
          Length = 2565

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 375  tcatattggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaa 434
            ||||| ||||||||||||||||||||  | ||||| |||||   ||| ||||||||||||
Sbjct: 2044 tcataatggagaacaaagttgtccttgcggattgtctcccagttgtttggatcaaagcaa 1985

                                
Query: 435  atgtaggatcctcgttcata 454
               || ||||||||||||||
Sbjct: 1984 ccataagatcctcgttcata 1965

>dbj|AK060779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C04, full
            insert sequence
          Length = 1998

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 375  tcatattggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaa 434
            ||||| ||||||||||||||||||||  | ||||| |||||   ||| ||||||||||||
Sbjct: 1503 tcataatggagaacaaagttgtccttgcggattgtctcccagttgtttggatcaaagcaa 1444

                                
Query: 435  atgtaggatcctcgttcata 454
               || ||||||||||||||
Sbjct: 1443 ccataagatcctcgttcata 1424

>gb|BT017561.1| Zea mays clone EL01N0425G04.c mRNA sequence
          Length = 1233

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                       
Query: 375 tcatattggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaa 434
           ||||| ||||||||||||||||||||  | ||||| |||||    |  || |||||||||
Sbjct: 931 tcatagtggagaacaaagttgtccttgcgtattgtgtcccaggattctgggtcaaagcaa 872

                                                                 
Query: 435 atgtaggatcctcgttcatacagtggagttttcacaagaggtgccacatttgaa 488
             ||| ||||| |||||||| ||  ||||||| || |||||| |||||||||||
Sbjct: 871 tagtaagatccacgttcatagaggtgagtttttactagaggttccacatttgaa 818

>gb|AY108098.1| Zea mays PCO062058 mRNA sequence
          Length = 1634

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                        
Query: 375  tcatattggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaa 434
            ||||| ||||||||||||||||||||  | ||||| |||||    |  || |||||||||
Sbjct: 1232 tcatagtggagaacaaagttgtccttgcgtattgtgtcccaggattctgggtcaaagcaa 1173

                                                                  
Query: 435  atgtaggatcctcgttcatacagtggagttttcacaagaggtgccacatttgaa 488
              ||| ||||| |||||||| ||  ||||||| || |||||| |||||||||||
Sbjct: 1172 tagtaagatccacgttcatagaggtgagtttttactagaggttccacatttgaa 1119

>ref|XM_469627.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 816

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                       
Query: 375 tcatattggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaa 434
           ||||| || |||||||| ||||||||  | ||||| |||||   ||| ||||||||||||
Sbjct: 476 tcataatgaagaacaaaattgtccttgcggattgtctcccagttgtttggatcaaagcaa 417

                                                    
Query: 435 atgtaggatcctcgttcatacagtggagttttcacaagagg 475
             ||| || |||||||||||  | |||||||| || |||||
Sbjct: 416 ccgtaagaccctcgttcataatgaggagttttgaccagagg 376

>gb|AC122248.5| Mus musculus BAC clone RP23-156N18 from 7, complete sequence
          Length = 198901

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 411   tcccacaggttgggatcaaag 431
             |||||||||||||||||||||
Sbjct: 48854 tcccacaggttgggatcaaag 48874

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 375      tcatattggagaacaaagttgtcct 399
                ||||| |||||||||||||||||||
Sbjct: 33179188 tcataatggagaacaaagttgtcct 33179212

>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1311_D08
          Length = 163702

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 375  tcatattggagaacaaagttgtcct 399
            ||||| |||||||||||||||||||
Sbjct: 8497 tcataatggagaacaaagttgtcct 8521

>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 375   tcatattggagaacaaagttgtcct 399
             ||||| |||||||||||||||||||
Sbjct: 94848 tcataatggagaacaaagttgtcct 94872

>dbj|AK099785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096H01, full
            insert sequence
          Length = 3538

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                        
Query: 375  tcatattggagaacaaagttgtccttctgaattgtatcccacaggttgggatcaaagcaa 434
            ||||| || |||||||| ||||||||  | ||||| |||||   ||| ||||||||||||
Sbjct: 3082 tcataatgaagaacaaaattgtccttgcggattgtctcccagttgtttggatcaaagcaa 3023

                                                     
Query: 435  atgtaggatcctcgttcatacagtggagttttcacaagagg 475
              ||| || |||||||||||  | |||||||| || |||||
Sbjct: 3022 ccgtaagaccctcgttcataatgaggagttttgaccagagg 2982

>gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, complete sequence
          Length = 165926

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 523   aaaaccaccctttgttatacagttcatt 550
             |||||||||||| |||||||||| ||||
Sbjct: 81015 aaaaccacccttggttatacagtgcatt 81042

>emb|AL391476.20| Human DNA sequence from clone RP11-229A19 on chromosome 1 Contains the 3'
              end of the TTF2 gene for RNA polymerase II transcription
              termination factor, the TRIM45 gene for tripartite
              motif-containing 45, a ribosomal protein S15a (RPS15A)
              pseudogene, the gene for immune costimulatory protein B7-H4
              and a CpG island, complete sequence
          Length = 171595

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 619    actttggaaaattgaatggc 638
              ||||||||||||||||||||
Sbjct: 104700 actttggaaaattgaatggc 104719

>gb|AC129263.6| Rattus norvegicus 2 BAC CH230-258E4 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 194958

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gggaggacaggtctcttctc 367
             ||||||||||||||||||||
Sbjct: 60394 gggaggacaggtctcttctc 60413

>gb|DQ397555.1| Cenarchaeum symbiosum clone C09C10, complete sequence
          Length = 39564

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   atgataataacaggtactga 273
             ||||||||||||||||||||
Sbjct: 20746 atgataataacaggtactga 20765

>gb|AC022889.8| Homo sapiens chromosome 15, clone RP11-492D5, complete sequence
          Length = 108652

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    acaaagttgtccttctgaat 406
              ||||||||||||||||||||
Sbjct: 105146 acaaagttgtccttctgaat 105127

>gb|AC097491.2| Homo sapiens BAC clone RP11-257A22 from 4, complete sequence
          Length = 145528

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   ttaaagagtacatgtctgaa 40
            ||||||||||||||||||||
Sbjct: 8403 ttaaagagtacatgtctgaa 8422

>gb|AC068397.6| Homo sapiens chromosome 15, clone RP11-272D12, complete sequence
          Length = 169892

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   acaaagttgtccttctgaat 406
             ||||||||||||||||||||
Sbjct: 86091 acaaagttgtccttctgaat 86072

>gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, complete sequence
          Length = 214166

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    acaaagttgtccttctgaat 406
              ||||||||||||||||||||
Sbjct: 206895 acaaagttgtccttctgaat 206914

>gb|AC092680.2| Homo sapiens BAC clone RP11-694B12 from 2, complete sequence
          Length = 200028

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    agatgtagaatagtgtcaag 611
              ||||||||||||||||||||
Sbjct: 122610 agatgtagaatagtgtcaag 122591

>gb|U39667.1| Caenorhabditis elegans cosmid C18A11, complete sequence
          Length = 43449

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 586  tgtagaagatgtagaatagt 605
            ||||||||||||||||||||
Sbjct: 5004 tgtagaagatgtagaatagt 5023

>emb|AL929519.6| Mouse DNA sequence from clone RP23-421D17 on chromosome 4, complete
            sequence
          Length = 18140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 410  atcccacaggttgggatcaa 429
            ||||||||||||||||||||
Sbjct: 9398 atcccacaggttgggatcaa 9379

>gb|L35129.1|CELXOL1ES Caenorhabditis elegans early switch (xol-1) gene exons 1-7,
           complete cds's
          Length = 6948

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 586 tgtagaagatgtagaatagt 605
           ||||||||||||||||||||
Sbjct: 57  tgtagaagatgtagaatagt 76


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,687,557
Number of Sequences: 3902068
Number of extensions: 5687557
Number of successful extensions: 95218
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95124
Number of HSP's gapped (non-prelim): 94
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)