>DNJ10_ARATH (Q8GYX8) Chaperone protein dnaJ 10 (AtJ10) (AtDjC10)|
          Length = 398

 Score =  122 bits (306), Expect = 8e-28
 Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
 Frame = -3

Query: 589 KASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKV--EEGANK 416
           +A++ELGK  +Y+GVPFIAEW R+KGH IKSQ+ AA+GA AL QLQ+ MK+    EG   
Sbjct: 189 QAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQLTAATGAYALFQLQEEMKRQLNTEGNYT 248

Query: 415 EEQLMKSFEEKKEAMLNSLWKINVVDIESTLSRVCQAVLKDSTVSKDVXXXXXXXXXXXG 236
           EE+L +  +  K  M++SLWK+NV DIE+TL RVCQ VL+D    ++            G
Sbjct: 249 EEELEEYLQAHKRVMIDSLWKLNVADIEATLCRVCQLVLQDPEAKREELRTRARGLKALG 308

Query: 235 TIFQGAKSLYHRENSLRVESPMEGEGTTSSH 143
            IFQ AK+     + L    P +  G   +H
Sbjct: 309 RIFQRAKTA-SESDPLENSEPQKLNGNGKNH 338

>YIS4_YEAST (P40564) Hypothetical 48.6 kDa protein in BET1-PAN1 intergenic|
           region
          Length = 432

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
 Frame = -3

Query: 616 HCLDIFMYGKASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKK 437
           H +    Y KA   L    L+ G+  I   ++ KG      +   S AI        ++K
Sbjct: 258 HTIGDVYYEKAEIFLASQNLF-GMGGIFHSMKAKGGVFMDTLRTVSAAIDAQNTMKELEK 316

Query: 436 VEEGANKEE---------QLMKSFEEKKEA-------MLNSLWKINVVDIESTLSRVCQA 305
           ++E +   E         Q+  + EE  +        +L++ W  +  +I STL  VC+ 
Sbjct: 317 MKEASTNNEPLFDKDGNEQIKPTTEELAQQEQLLMGKVLSAAWHGSKYEITSTLRGVCKK 376

Query: 304 VLKDSTVSK 278
           VL+D +VSK
Sbjct: 377 VLEDDSVSK 385

>TATB_YERPE (Q8ZAM3) Sec-independent protein translocase protein tatB homolog|
          Length = 220

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 574 LGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVEEGA--NKEEQLM 401
           LG  +L + V  ++ W+R       +  +  +  + L +LQD +KKVE+    N   +L 
Sbjct: 20  LGPERLPVAVRTVSGWIRTLRSLAATVQNELAQELKLQELQDSLKKVEQAGLQNLTPELK 79

Query: 400 KSFEEKKEA 374
            S +E KEA
Sbjct: 80  ASMDELKEA 88

>CAJ1_YEAST (P39101) Protein CAJ1|
          Length = 391

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 23/102 (22%), Positives = 41/102 (40%)
 Frame = -3

Query: 589 KASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVEEGANKEE 410
           KA+  +   K Y G+  I    RD   ++KS  +  S  +   +  + M +V      + 
Sbjct: 237 KANNFIMSKKTY-GISKIFTGTRDNARSVKSAYNLLSTGLEAQKAMEKMSEVNTDELDQY 295

Query: 409 QLMKSFEEKKEAMLNSLWKINVVDIESTLSRVCQAVLKDSTV 284
           +  K         L  +W ++  ++E  L  VC  +L D  V
Sbjct: 296 ERAKFESTMAGKALGVMWAMSKFELERKLKDVCNKILNDKKV 337

>PRP46_SCHPO (O13615) Pre-mRNA-splicing factor prp46 (Pre-mRNA-processing|
           protein 5) (Complexed with cdc5 protein 1)
          Length = 473

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 596 VRQSVKRTWKE*IVYGCTIHS*VGKRQGSHH 504
           V Q++KRT+KE + YG  +   VGKR+  H+
Sbjct: 42  VAQNLKRTYKEHLEYGSVLGGTVGKRKNRHY 72

>SH3G2_MOUSE (Q62420) SH3-containing GRB2-like protein 2 (EC 2.3.1.-) (SH3|
           domain protein 2A) (Endophilin 1) (SH3p4)
          Length = 352

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = -3

Query: 460 QLQDGMKKVEEGANKEEQL---MKSFEEKKEAMLNSLWKINVVDIE--STLSRVCQAVLK 296
           +L  G KK  +G   +E+L   ++ F+E KE   +S++ +  +DIE  S LS + QA L+
Sbjct: 165 RLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE 224

>CF060_HUMAN (Q8NB25) Protein C6orf60|
          Length = 1020

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = -3

Query: 589 KASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVEEGANKEE 410
           K + E  K++L   +  + E + DK +T   ++           LQD ++K E+G    E
Sbjct: 400 KLNLEEDKNQLQQELENLKEVLEDKLNTANQEIG---------HLQDMVRKSEQGLGSAE 450

Query: 409 QLMKSFEEKKEAMLNSL 359
            L+ S ++ +E + N L
Sbjct: 451 GLIASLQDSQERLQNEL 467

>ZN678_HUMAN (Q5SXM1) Zinc finger protein 678|
          Length = 525

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +2

Query: 29  GKHTYRCVESKPAVPQYYKQTI---IHRDPNNSQIVKCQSSVRRCRSLPFHRRFH 184
           G+  Y+C E   A  Q+   T    IH      Q  +C  +  RC  L  H+R H
Sbjct: 289 GEKPYKCEECGKAFTQFASLTRHKRIHTGEKPYQCEECGKTFNRCSHLSSHKRIH 343

>GNL3_DROME (Q8MT06) Guanine nucleotide-binding protein-like 3 homolog|
           (Nucleostemin homolog)
          Length = 581

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = -3

Query: 541 FIAEWVRDKGHTIKSQVHAA---SGAIALMQLQDGM----KKVEEGANKEEQLMKSFEEK 383
           F AE  ++K  T++S V  A   S    +M   D      KK +    KE+ L + F+E 
Sbjct: 85  FKAEREQNKFKTLESMVEDADMRSTVHGIMHENDAQDQDEKKYKNAVTKEQSLKQYFKEF 144

Query: 382 KEAMLNSLWKINVVDIESTLSRVCQAV 302
           ++ + N+   + VVD    L   C  V
Sbjct: 145 RKVIENADVVLEVVDARDPLGTRCNEV 171

>IF2_CHLCV (Q823F2) Translation initiation factor IF-2|
          Length = 887

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
 Frame = -3

Query: 523 RDKGHTIKSQVHAASGAIALMQLQDG-------------MKKVEEGANKEEQLMKSFEEK 383
           R +G  I+S++H   GA+A + +Q+G               KV+   N+  QLMKS    
Sbjct: 568 RARGLVIESELHKGLGAVATILVQNGTLHLGEALVFNDCYGKVKTMHNEHNQLMKSASPS 627

Query: 382 KEAMLNSL 359
             A++  L
Sbjct: 628 IPALITGL 635

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
 Frame = -3

Query: 598 MYGKASRELGKSKLY--MGVPFIAEWVRDK-GHTIKSQVHAASG---AIALMQLQDGMKK 437
           M+ +  +ELG   L   +  PF+ +++      T  S V  A     AI L  L DGM++
Sbjct: 664 MFTEMRQELGMDLLKERLSKPFVQQYIAGMFPKTNASHVRFAINYFTAINLGPLTDGMRE 723

Query: 436 VEEGANKEEQLMKSFEEKKEAMLNS 362
           +  G  +EE+ +K  EE+++   +S
Sbjct: 724 ILPGLVEEEERLKKEEEEQKREYDS 748

>HRPA_PSESY (Q52420) Hrp pili protein hrpA (TTSS pilin hrpA)|
          Length = 108

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 451 DGMKKVEEGANKEEQLMKSFEEKKEAMLNSL 359
           DG    E G  +E  ++  FE+KKEA+ N +
Sbjct: 66  DGTANEENGLLRESSMLAGFEDKKEALSNQI 96

>TATB_SHEON (Q8E9R3) Sec-independent protein translocase protein tatB homolog|
          Length = 149

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 574 LGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVEEG--ANKEEQLM 401
           LG  +L + V  +  WVR       S        + + QL   +KK E    +N   +L 
Sbjct: 21  LGPERLPVAVRSVTSWVRAMKRMANSVKEELEQELKIEQLHADLKKAESKGLSNLSPELQ 80

Query: 400 KSFEEKKEA 374
           +S E+ K+A
Sbjct: 81  ESIEQLKQA 89

>HRPA_PSESH (Q9F0B1) Hrp pili protein hrpA (TTSS pilin hrpA)|
          Length = 108

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 451 DGMKKVEEGANKEEQLMKSFEEKKEAMLNSL 359
           DG    E G  +E  ++  FE+KKEA+ N +
Sbjct: 66  DGTANEENGLLRETSMLAGFEDKKEALSNQI 96

>HRPA_PSESG (Q52480) Hrp pili protein hrpA (TTSS pilin hrpA)|
          Length = 108

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 451 DGMKKVEEGANKEEQLMKSFEEKKEAMLNSL 359
           DG    E G  +E  ++  FE+KKEA+ N +
Sbjct: 66  DGTANEENGLLRETSMLAGFEDKKEALSNQI 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,195,036
Number of Sequences: 219361
Number of extensions: 1778618
Number of successful extensions: 5358
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5356
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)