ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MCM6_ANOGA (Q7Q0Q1) DNA replication licensing factor Mcm6 29 3.4
2IF2B_PYRFU (Q8U3I5) Translation initiation factor 2 beta subunit... 28 5.7
3AOFB_CAVPO (P58028) Amine oxidase [flavin-containing] B (EC 1.4.... 27 9.8

>MCM6_ANOGA (Q7Q0Q1) DNA replication licensing factor Mcm6|
          Length = 814

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 269 EHESLIEKSYQAEELVHGKTYWAIEQVEMAKESASLILSRLTDV*KVLQKLKHHD 105
           E E L  +     EL++    W + QVE   ES   ++ R   + KV+ +L +HD
Sbjct: 728 ESEELDREGISKTELIN----WYLSQVEDQLESVEELMERKVLIEKVIDRLIYHD 778



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>IF2B_PYRFU (Q8U3I5) Translation initiation factor 2 beta subunit (eIF-2-beta)|
           (aIF2-beta)
          Length = 140

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 281 LDFDEHESLIEKSYQ--AEELVHGKTYWAIEQVEMAKESASLILSRLTDV*KVLQKLKHH 108
           +D+ ++E L+EK+YQ   E + H K+ + +    +  E    I+    D+   L +   H
Sbjct: 3   IDYYDYEKLLEKAYQELPENVKHHKSRFEVPGALVTIEGNKTIIENFKDIADALNRDPQH 62



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>AOFB_CAVPO (P58028) Amine oxidase [flavin-containing] B (EC 1.4.3.4)|
           (Monoamine oxidase type B) (MAO-B)
          Length = 519

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 37  VNQSFESVTVTSIKHGIYEERYV 105
           ++Q+ ESV V ++ H IYE +YV
Sbjct: 237 IDQTGESVLVETLNHEIYEAKYV 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,543,897
Number of Sequences: 219361
Number of extensions: 586431
Number of successful extensions: 1276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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