ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11i17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA 418 e-114
2dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 394 e-106
3gb|AY108240.1| Zea mays PCO100302 mRNA sequence 355 1e-94
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
6emb|AJ133751.1|SOL133751 Spinacia oleracea mRNA for chloroplast ... 64 5e-07
7emb|X72384.1|DCD2NLP D.carota D2 mRNA for glycine rich protein 58 3e-05
8emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, ... 44 0.50
9gb|AY112589.1| Zea mays CL61174_1 mRNA sequence 44 0.50
10ref|NM_116184.2| Arabidopsis thaliana unknown protein AT3G63190 ... 42 2.0
11gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome... 42 2.0
12gb|AC103604.4| Mus musculus chromosome 3, clone RP23-95A20, comp... 42 2.0
13gb|AY092982.1| Arabidopsis thaliana putative protein (At3g63190)... 42 2.0
14gb|AY056778.1| Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, com... 42 2.0
15gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, comp... 42 2.0
16gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome... 42 2.0
17gb|AF372883.1|AF372883 Arabidopsis thaliana AT3g63190/F16M2_40 m... 42 2.0
18emb|BX822699.1|CNS0A72X Arabidopsis thaliana Full-length cDNA Co... 42 2.0
19emb|BX825146.1|CNS0A6FZ Arabidopsis thaliana Full-length cDNA Co... 42 2.0
20gb|BT002678.1| Arabidopsis thaliana At3g63190/F16M2_40 gene, com... 42 2.0
21gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome... 42 2.0
22gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, com... 40 7.8
23ref|XM_956989.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.8
24ref|XM_328654.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.8
25gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosom... 40 7.8
26gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer... 40 7.8
27gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, com... 40 7.8
28ref|XM_742778.1| Aspergillus fumigatus Af293 tRNA-splicing endon... 40 7.8
29ref|XM_539204.2| PREDICTED: Canis familiaris similar to plectin ... 40 7.8
30ref|XM_852242.1| PREDICTED: Canis familiaris similar to plectin ... 40 7.8
31ref|XM_852201.1| PREDICTED: Canis familiaris similar to plectin ... 40 7.8
32ref|XM_852160.1| PREDICTED: Canis familiaris similar to plectin ... 40 7.8
33ref|XM_852120.1| PREDICTED: Canis familiaris similar to plectin ... 40 7.8
34ref|XM_852074.1| PREDICTED: Canis familiaris similar to plectin ... 40 7.8
35ref|XM_843706.1| PREDICTED: Canis familiaris similar to plectin ... 40 7.8
36gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, comple... 40 7.8
37gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, comp... 40 7.8
38gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Ca... 40 7.8
39gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, com... 40 7.8
40emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chr... 40 7.8
41emb|AL607062.10| Human DNA sequence from clone RP11-439F7 on chr... 40 7.8
42gb|AF306784.1| Cherax quadricarinatus vitellogenin (vg) mRNA, co... 40 7.8
43gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.8
44gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's ... 40 7.8
45emb|BX571658.1| Wolinella succinogenes, complete genome; segment... 40 7.8
46emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chr... 40 7.8
47emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in... 40 7.8
48emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in ... 40 7.8
49gb|AC010863.10| Homo sapiens chromosome 10 clone RP11-346E7, com... 40 7.8
50gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, compl... 40 7.8
51gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, compl... 40 7.8
52dbj|AK138983.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 7.8
53gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, comp... 40 7.8
54ref|XM_626980.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.8
55gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Can... 40 7.8
56dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, ... 40 7.8
57gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complet... 40 7.8
58gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromos... 40 7.8
59emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chr... 40 7.8
60emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chro... 40 7.8
61emb|AL845165.4| Mouse DNA sequence from clone RP23-281N9 on chro... 40 7.8 
>ref|XM_478772.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score =  418 bits (211), Expect = e-114
 Identities = 349/395 (88%)
 Strand = Plus / Minus

                                                                       
Query: 177 tcctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgattttt 236
           ||||||||||||||||||||||| ||||| | |||||||||||||||||| || | ||||
Sbjct: 882 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt 823

                                                                       
Query: 237 tgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagc 296
           |||||||| || || ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 822 tgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagc 763

                                                                       
Query: 297 ttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttca 356
           ||||| || |||||||| || |||| ||||||||| || |||||||||||||||||||||
Sbjct: 762 ttatcgtaagctttgatggcatctcttcttatgttccttatagcaaccttgccttcttca 703

                                                                       
Query: 357 gataacttagctacggtttttgtcatctcctttctgcgatcagatgtcaatggtgggaca 416
           | ||| ||||| || ||||||| ||  ||||||||||| ||||| ||||||||||| |||
Sbjct: 702 gctaatttagcaacagtttttgccaattcctttctgcggtcagaagtcaatggtggaaca 643

                                                                       
Query: 417 gtgactcgtatcacttctccatcattgcttggtgttaccccaatatttgcagcaactata 476
           |||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| 
Sbjct: 642 gtgactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactatt 583

                                                                       
Query: 477 gctttctcaatgagcttgaggcaagacttgtcatatggctggataagaagagaagtcgca 536
           | ||||||||||||||||||| | || |||||||||||||| ||||| |||||||| |||
Sbjct: 582 gttttctcaatgagcttgagggaggatttgtcatatggctgaataaggagagaagttgca 523

                                              
Query: 537 tctggagtatttacttgtgcaatagtcttcaagtt 571
           |||||||| ||||  ||||| ||  ||||||||||
Sbjct: 522 tctggagtgtttatctgtgcgatgctcttcaagtt 488
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>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full
           insert sequence
          Length = 1226

 Score =  394 bits (199), Expect = e-106
 Identities = 347/395 (87%), Gaps = 1/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 177 tcctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgattttt 236
           ||||||||||||||||||||||| ||||| | |||||||||||||||||| || | ||||
Sbjct: 881 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt 822

                                                                       
Query: 237 tgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagc 296
            ||||||| || || ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 821 -gtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagc 763

                                                                       
Query: 297 ttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttca 356
           ||||| || ||| |||| || |||| ||||||||| || |||||||||||||||||||||
Sbjct: 762 ttatcgtaagctatgatggcatctcttcttatgttccttatagcaaccttgccttcttca 703

                                                                       
Query: 357 gataacttagctacggtttttgtcatctcctttctgcgatcagatgtcaatggtgggaca 416
           | ||| ||||| || ||||||| ||  ||||||||||| ||||| ||||||||||| |||
Sbjct: 702 gctaatttagcaacagtttttgccaattcctttctgcggtcagaagtcaatggtggaaca 643

                                                                       
Query: 417 gtgactcgtatcacttctccatcattgcttggtgttaccccaatatttgcagcaactata 476
           |||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| 
Sbjct: 642 gtgactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactatt 583

                                                                       
Query: 477 gctttctcaatgagcttgaggcaagacttgtcatatggctggataagaagagaagtcgca 536
           | ||||||||||||||||||| | || |||||||||||||| ||||| |||||||| |||
Sbjct: 582 gttttctcaatgagcttgagggaggatttgtcatatggctgaataaggagagaagttgca 523

                                              
Query: 537 tctggagtatttacttgtgcaatagtcttcaagtt 571
           |||||||| ||||  ||||| ||  ||||||||||
Sbjct: 522 tctggagtgtttatctgtgcgatgctcttcaagtt 488
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>gb|AY108240.1| Zea mays PCO100302 mRNA sequence
          Length = 776

 Score =  355 bits (179), Expect = 1e-94
 Identities = 317/363 (87%)
 Strand = Plus / Minus

                                                                       
Query: 209 ctttttcatgtactcgtctgtgattttttgtagatcggctgataaatccttcacattatc 268
           |||||||||||||||||| |||| ||||||||| || ||||| ||||| |||||||| ||
Sbjct: 775 ctttttcatgtactcgtccgtgactttttgtaggtcagctgacaaatctttcacattgtc 716

                                                                       
Query: 269 ttcagaaagtttcttttccttctctagcttatcataggctttgattgcgtctcgtcttat 328
           ||||||||| ||||||||||||| ||| ||||| || ||||||||||| |||| ||||||
Sbjct: 715 ttcagaaagcttcttttccttctgtagtttatcgtaagctttgattgcatctcttcttat 656

                                                                       
Query: 329 gtttctgatagcaaccttgccttcttcagataacttagctacggtttttgtcatctcctt 388
           ||| || |||||||||||||| |||||||  || |||||||| || ||||  |  |||||
Sbjct: 655 gttccttatagcaaccttgccatcttcagccaatttagctactgtctttgctaattcctt 596

                                                                       
Query: 389 tctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgcttgg 448
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 595 tctgcgatcagatgtcaatggtgggacagtcactcgtatcacttctccgtcattgcttgg 536

                                                                       
Query: 449 tgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggcaagacttgtc 508
           ||| || |||| |||||| |||||||||| |||||| || ||||||||||  ||||||||
Sbjct: 535 tgtcacaccaagatttgcggcaactatagttttctcgataagcttgaggcttgacttgtc 476

                                                                       
Query: 509 atatggctggataagaagagaagtcgcatctggagtatttacttgtgcaatagtcttcaa 568
           |||||| || |||||||||||||| |||||||||||  |||  ||||||||  |||||||
Sbjct: 475 atatggttgaataagaagagaagttgcatctggagtgcttatctgtgcaatgctcttcaa 416

              
Query: 569 gtt 571
           |||
Sbjct: 415 gtt 413
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  155 bits (78), Expect = 2e-34
 Identities = 105/114 (92%)
 Strand = Plus / Minus

                                                                            
Query: 385      cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgc 444
                |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 22952090 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 22952031

                                                                      
Query: 445      ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 498
                ||||||| ||||| | ||||||||||||||| | ||||||||||||||||||||
Sbjct: 22952030 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 22951977



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 178      cctgttccttctgcttttggatggcttcaacctttttcatgtactcgtc 226
                |||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 22954341 cctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 22954293



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 236      ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 288
                ||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct: 22954166 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 22954114



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 504      ttgtcatatggctggataagaagagaagtcgcatctggagtatttacttgtgcaatagtc 563
                |||||||||||||| ||||| |||||||| ||||||||||| ||||  ||||| ||  ||
Sbjct: 22951887 ttgtcatatggctgaataaggagagaagttgcatctggagtgtttatctgtgcgatgctc 22951828

                        
Query: 564      ttcaagtt 571
                ||||||||
Sbjct: 22951827 ttcaagtt 22951820



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 342      accttgccttcttcagataacttagctacggtttttg 378
                |||||||||||||||| ||| ||||| || |||||||
Sbjct: 22952942 accttgccttcttcagctaatttagcaacagtttttg 22952906
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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 105/114 (92%)
 Strand = Plus / Minus

                                                                         
Query: 385   cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctccatcattgc 444
             |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 27304 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 27245

                                                                   
Query: 445   ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 498
             ||||||| ||||| | ||||||||||||||| | ||||||||||||||||||||
Sbjct: 27244 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 27191



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 178   cctgttccttctgcttttggatggcttcaacctttttcatgtactcgtc 226
             |||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 29555 cctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 29507



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 236   ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 288
             ||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct: 29380 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 29328



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 504   ttgtcatatggctggataagaagagaagtcgcatctggagtatttacttgtgcaatagtc 563
             |||||||||||||| ||||| |||||||| ||||||||||| ||||  ||||| ||  ||
Sbjct: 27101 ttgtcatatggctgaataaggagagaagttgcatctggagtgtttatctgtgcgatgctc 27042

                     
Query: 564   ttcaagtt 571
             ||||||||
Sbjct: 27041 ttcaagtt 27034



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 342   accttgccttcttcagataacttagctacggtttttg 378
             |||||||||||||||| ||| ||||| || |||||||
Sbjct: 28156 accttgccttcttcagctaatttagcaacagtttttg 28120
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>emb|AJ133751.1|SOL133751 Spinacia oleracea mRNA for chloroplast ribosome recycling factor
          Length = 1109

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 143/180 (79%)
 Strand = Plus / Minus

                                                                       
Query: 176 ctcctgttccttctgcttttggatggcttcaacctttttcatgtactcgtctgtgatttt 235
           ||||||||| |||||||| | ||| |  |||||||| ||||||||||| || || |  ||
Sbjct: 827 ctcctgttctttctgcttgtagatagactcaaccttcttcatgtactcatcggtcaactt 768

                                                                       
Query: 236 ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctag 295
            || ||||| || ||||  || |||||||||||||| ||||| || ||||||||||| ||
Sbjct: 767 ctgcagatcagccgataggtctttcacattatcttccgaaagctttttttccttctcaag 708

                                                                       
Query: 296 cttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttc 355
            || ||||| | ||| |  || |||| ||||||||| || |  |||||||| ||||||||
Sbjct: 707 tttttcataagatttcagagcatctcttcttatgttcctcactgcaacctttccttcttc 648
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>emb|X72384.1|DCD2NLP D.carota D2 mRNA for glycine rich protein
          Length = 946

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 248 tgataaatccttcacattatcttcagaaagtttcttttccttctctagcttatcataggc 307
           |||||| ||||||||||||||||| || || || |||||||| || || |||||||||| 
Sbjct: 600 tgataagtccttcacattatcttctgagagctttttttccttttcaagtttatcatagga 541

                                
Query: 308 tttgattgcgtctcgtcttat 328
           ||| || || |||| ||||||
Sbjct: 540 tttaatggcatctcttcttat 520
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>emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, complete sequence
          Length = 97685

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 191   cttttggatggcttcaaccttt 212
             ||||||||||||||||||||||
Sbjct: 13586 cttttggatggcttcaaccttt 13607
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>gb|AY112589.1| Zea mays CL61174_1 mRNA sequence
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 172 tcagctcctgttccttctgcttttggatgg 201
           |||| ||||||||||||||||| |||||||
Sbjct: 374 tcagttcctgttccttctgcttctggatgg 403
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>ref|NM_116184.2| Arabidopsis thaliana unknown protein AT3G63190 mRNA, complete cds
          Length = 1235

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 252 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 304
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
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>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence
          Length = 197161

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    ctcagctcctgttccttctgc 191
              |||||||||||||||||||||
Sbjct: 191378 ctcagctcctgttccttctgc 191358
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>gb|AC103604.4| Mus musculus chromosome 3, clone RP23-95A20, complete sequence
          Length = 170670

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 470    aactatagctttctcaatgag 490
              |||||||||||||||||||||
Sbjct: 162970 aactatagctttctcaatgag 162950
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>gb|AY092982.1| Arabidopsis thaliana putative protein (At3g63190) mRNA, complete
           cds
          Length = 1173

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 252 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 304
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 804 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 752
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>gb|AY056778.1| Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds
          Length = 1212

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 252 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 304
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
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>gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, complete sequence
          Length = 162298

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 470    aactatagctttctcaatgag 490
              |||||||||||||||||||||
Sbjct: 134142 aactatagctttctcaatgag 134162
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>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence
          Length = 134517

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   tcagaaatcttgtggccagtt 138
             |||||||||||||||||||||
Sbjct: 58113 tcagaaatcttgtggccagtt 58133
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>gb|AF372883.1|AF372883 Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds
          Length = 1050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 252 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 304
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 786 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 734
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>emb|BX822699.1|CNS0A72X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB59ZB01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1225

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 252 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 304
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 916 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 864
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>emb|BX825146.1|CNS0A6FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL15ZF09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1062

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 252 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 304
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 802 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 750
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>gb|BT002678.1| Arabidopsis thaliana At3g63190/F16M2_40 gene, complete cds
          Length = 828

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 252 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 304
           ||||||||||| || ||||| || || ||||| |||||||| || ||||||||
Sbjct: 737 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 685
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>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence
          Length = 157937

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 171    ctcagctcctgttccttctgc 191
              |||||||||||||||||||||
Sbjct: 115698 ctcagctcctgttccttctgc 115718
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>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence
          Length = 197112

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   gttccttctgcttttggatggctt 204
             ||||| ||||||||||||||||||
Sbjct: 59770 gttccctctgcttttggatggctt 59793
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>ref|XM_956989.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial
            mRNA
          Length = 8481

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  ttcttttccttctctagctt 298
            ||||||||||||||||||||
Sbjct: 3755 ttcttttccttctctagctt 3736
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>ref|XM_328654.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial
            mRNA
          Length = 8481

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  ttcttttccttctctagctt 298
            ||||||||||||||||||||
Sbjct: 3755 ttcttttccttctctagctt 3736
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>gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosome 14, complete
             sequence
          Length = 205141

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ttcttttccttctctagctt 298
             ||||||||||||||||||||
Sbjct: 23505 ttcttttccttctctagctt 23524
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>gb|AC166290.7| Mus musculus  BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 242055

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   tcatctcctttctgcgatca 398
             ||||||||||||||||||||
Sbjct: 96145 tcatctcctttctgcgatca 96126
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>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence
          Length = 176643

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 181    gttccttctgcttttggatggctt 204
              ||||| ||||||||||||||||||
Sbjct: 104744 gttccctctgcttttggatggctt 104767
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>ref|XM_742778.1| Aspergillus fumigatus Af293 tRNA-splicing endonuclease (Afu6g02060)
            partial mRNA
          Length = 6231

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  tcataggctttgattgcgtc 319
            ||||||||||||||||||||
Sbjct: 3143 tcataggctttgattgcgtc 3124
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>ref|XM_539204.2| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 1 (LOC482083), mRNA
          Length = 15160

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cagctcctgttccttctgct 192
            ||||||||||||||||||||
Sbjct: 6612 cagctcctgttccttctgct 6593
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>ref|XM_852242.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 8 (LOC482083), mRNA
          Length = 14734

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cagctcctgttccttctgct 192
            ||||||||||||||||||||
Sbjct: 6186 cagctcctgttccttctgct 6167
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>ref|XM_852201.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 7 (LOC482083), mRNA
          Length = 14734

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cagctcctgttccttctgct 192
            ||||||||||||||||||||
Sbjct: 6186 cagctcctgttccttctgct 6167
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>ref|XM_852160.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 6 (LOC482083), mRNA
          Length = 15175

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cagctcctgttccttctgct 192
            ||||||||||||||||||||
Sbjct: 6627 cagctcctgttccttctgct 6608
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>ref|XM_852120.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 5 (LOC482083), mRNA
          Length = 14749

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cagctcctgttccttctgct 192
            ||||||||||||||||||||
Sbjct: 6201 cagctcctgttccttctgct 6182
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>ref|XM_852074.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 4 (LOC482083), mRNA
          Length = 14863

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cagctcctgttccttctgct 192
            ||||||||||||||||||||
Sbjct: 6315 cagctcctgttccttctgct 6296
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>ref|XM_843706.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 2 (LOC482083), mRNA
          Length = 14812

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cagctcctgttccttctgct 192
            ||||||||||||||||||||
Sbjct: 6264 cagctcctgttccttctgct 6245
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>gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, complete sequence
          Length = 167364

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ataggctttgattgcgtctc 321
             ||||||||||||||||||||
Sbjct: 78585 ataggctttgattgcgtctc 78566
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>gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, complete sequence
          Length = 232416

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   agaaagtttcttttccttct 291
             ||||||||||||||||||||
Sbjct: 57587 agaaagtttcttttccttct 57606
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>gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158603

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   tagctttctcaatgagcttg 494
             ||||||||||||||||||||
Sbjct: 80130 tagctttctcaatgagcttg 80149
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>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence
          Length = 208416

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    agaaagtttcttttccttct 291
              ||||||||||||||||||||
Sbjct: 203871 agaaagtttcttttccttct 203890
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>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the
             5' end of the GRID1 gene for glutamate receptor
             (ionotropic) delta 1, the 3' end of the gene for  friend
             of EBNA2 (FOE) (KIAA0261) and five CpG islands, complete
             sequence
          Length = 167780

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   cttgctcagctcctgttcct 186
             ||||||||||||||||||||
Sbjct: 64036 cttgctcagctcctgttcct 64055
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>emb|AL607062.10| Human DNA sequence from clone RP11-439F7 on chromosome 10 Contains a
             novel gene (LOC221035), complete sequence
          Length = 88210

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tttttgtcatctcctttctg 392
             ||||||||||||||||||||
Sbjct: 68033 tttttgtcatctcctttctg 68014
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>gb|AF306784.1| Cherax quadricarinatus vitellogenin (vg) mRNA, complete cds
          Length = 7944

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  ccttcacattatcttcagaa 275
            ||||||||||||||||||||
Sbjct: 3880 ccttcacattatcttcagaa 3861
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     gttccttctgcttttggatg 200
               ||||||||||||||||||||
Sbjct: 2037164 gttccttctgcttttggatg 2037145
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>gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210896

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     agtcttagcaagagtccaac 66
              ||||||||||||||||||||
Sbjct: 193966 agtcttagcaagagtccaac 193985
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>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7
          Length = 346792

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   gtatcacttctccatcattg 443
             ||||||||||||||||||||
Sbjct: 85185 gtatcacttctccatcattg 85166
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>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the
              3' end of the Tex14 gene for testis expressed gene 14,
              complete sequence
          Length = 200501

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 173    cagctcctgttccttctgcttttg 196
              ||||||||||| ||||||||||||
Sbjct: 186131 cagctcctgtttcttctgcttttg 186154
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>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17,
              complete sequence
          Length = 154824

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    tgtcatctcctttctgcgat 396
              ||||||||||||||||||||
Sbjct: 148312 tgtcatctcctttctgcgat 148331
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>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
              complete sequence
          Length = 185139

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    tgtcatctcctttctgcgat 396
              ||||||||||||||||||||
Sbjct: 138824 tgtcatctcctttctgcgat 138843
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>gb|AC010863.10| Homo sapiens chromosome 10 clone RP11-346E7, complete sequence
          Length = 186902

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tttttgtcatctcctttctg 392
             ||||||||||||||||||||
Sbjct: 64839 tttttgtcatctcctttctg 64820
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>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence
          Length = 193714

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    tcatctcctttctgcgatca 398
              ||||||||||||||||||||
Sbjct: 175471 tcatctcctttctgcgatca 175452
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>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    tgttccttctgcttttggat 199
              ||||||||||||||||||||
Sbjct: 145310 tgttccttctgcttttggat 145291
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>dbj|AK138983.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530045A01 product:hypothetical
            protein, full insert sequence
          Length = 2593

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 181  gttccttctgcttttggatggctt 204
            ||||| ||||||||||||||||||
Sbjct: 1241 gttccctctgcttttggatggctt 1264
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>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence
          Length = 191309

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   tgttccttctgcttttggat 199
             ||||||||||||||||||||
Sbjct: 14094 tgttccttctgcttttggat 14075
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>ref|XM_626980.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_700),
            partial mRNA
          Length = 5739

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  tcctgttccttctgcttttg 196
            ||||||||||||||||||||
Sbjct: 4173 tcctgttccttctgcttttg 4154
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>gb|AC153884.1| Mus musculus  6 BAC RP23-476E22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195597

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    gtctcgtcttatgtttctga 336
              ||||||||||||||||||||
Sbjct: 133775 gtctcgtcttatgtttctga 133756
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>dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, map 22, complete
             sequences
          Length = 141751

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   gaaagtttcttttccttctc 292
             ||||||||||||||||||||
Sbjct: 77045 gaaagtttcttttccttctc 77064
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>gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complete sequence
          Length = 135567

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   attgcttggtgttaccccaa 459
             ||||||||||||||||||||
Sbjct: 22759 attgcttggtgttaccccaa 22740
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>gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromosome unknown, complete
              sequence
          Length = 209917

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    accttgccttcttcagataa 361
              ||||||||||||||||||||
Sbjct: 165413 accttgccttcttcagataa 165432
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>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete
              sequence
          Length = 158364

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    cttttccttctctagcttat 300
              ||||||||||||||||||||
Sbjct: 111121 cttttccttctctagcttat 111140
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>emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chromosome 2, complete
             sequence
          Length = 90551

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ataggctttgattgcgtctc 321
             ||||||||||||||||||||
Sbjct: 24017 ataggctttgattgcgtctc 23998
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>emb|AL845165.4| Mouse DNA sequence from clone RP23-281N9 on chromosome 2, complete
             sequence
          Length = 112789

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   gtatcacttctccatcattg 443
             ||||||||||||||||||||
Sbjct: 40066 gtatcacttctccatcattg 40047


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,518,523
Number of Sequences: 3902068
Number of extensions: 5518523
Number of successful extensions: 121238
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121066
Number of HSP's gapped (non-prelim): 170
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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