ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11i12 |
|---|---|
| Clone Library Name | barley_pub |
>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA| N-glycosidase) Length = 560 Score = 255 bits (652), Expect = 3e-68 Identities = 127/128 (99%), Positives = 127/128 (99%) Frame = -1 Query: 463 YAVLSNGVQGRVDVKLAGLQSRXEVVLVGRIVARSKLFDFGCVLFYNEAAGVRVRPGELV 284 YAVLSNGVQGRVDVKLAGLQSR EVVLVGRIVARSKLFDFGCVLFYNEAAGVRVRPGELV Sbjct: 433 YAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDFGCVLFYNEAAGVRVRPGELV 492 Query: 283 PLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVT 104 PLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVT Sbjct: 493 PLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVT 552 Query: 103 ILWSEYPW 80 ILWSEYPW Sbjct: 553 ILWSEYPW 560
>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)| Length = 610 Score = 32.7 bits (73), Expect = 0.46 Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Frame = +3 Query: 108 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXX--IVSGMCSGTASACLAK 281 TS++++ T PV S A ++PL + +V+ S + Sbjct: 465 TSSASTSHATSLPVTDTSSASTGHATPLPVTDTSSASTGHATPLLVTDTSSASTGHTTPL 524 Query: 282 GTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLLRT 458 +SP T A+ T P S S AT LP TSS ST TPLL T Sbjct: 525 HVTSPSSASTGHATPLPVTSPSSASTSHATSLPVTDTSS--------ASTGHATPLLVT 575
>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2| Length = 306 Score = 32.3 bits (72), Expect = 0.61 Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 7/114 (6%) Frame = +3 Query: 126 LTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGTSSPGRT 305 L P RP R A L S P+T + C+G C A ++P Sbjct: 132 LEPRARPSGRTPPAQLRSPWPMTAAGPASRARASETGSTASCAGRWRTCCA-AAAAPSAA 190 Query: 306 RTPAASL*KSTQPKSNSLLRATILP-------TRTTSSRDCRPASFTSTRPWTP 446 R+ +A +ST +S RA P TRT + R T PW P Sbjct: 191 RSASARTGRST----SSCARAARAPSATEGALTRTPAPRRPLQRRRPGTGPWRP 240
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 31.6 bits (70), Expect = 1.0 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Frame = +3 Query: 99 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLA 278 K+ T+ + T T P P A+ + P+ I + GT Sbjct: 2579 KVPTTTTTGFTAT--PSSSPGTAL---TPPVWISTTTTPTTRGSTVTPSSIPGTTHTATV 2633 Query: 279 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 446 T++ G TP++S S P S + TI T +T++ P+S TRP P Sbjct: 2634 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTRPIPP 2689 Query: 447 LLRT 458 +L T Sbjct: 2690 VLTT 2693 Score = 29.3 bits (64), Expect = 5.1 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Frame = +3 Query: 99 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLA 278 K+ T+ + T T P P A+ + P+ I + GT Sbjct: 3277 KVPTTTTTGFTAT--PSSSPGTAL---TPPVWISTTTTPTTRGSTVTPSSIPGTTHTATV 3331 Query: 279 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 446 T++ G TP++S S P S + TI T +T++ P+S T P P Sbjct: 3332 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTTPIPP 3387 Query: 447 LLRT 458 +L T Sbjct: 3388 VLTT 3391
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 30.8 bits (68), Expect = 1.8 Identities = 32/112 (28%), Positives = 49/112 (43%) Frame = +3 Query: 111 SNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGTS 290 + S ++ T +P P+ L ++SPLT VS S T S T+ Sbjct: 1394 TTSTPISSTPQPTSSPT--TLPTTSPLTSSATSPTTSHITSTVSPTTSPTTS------TT 1445 Query: 291 SPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 446 SP T +P S +T P +++ + P+ TTS+ P+ TST TP Sbjct: 1446 SP--TTSPTTS---TTSPTTST---TSPTPSPTTSTTSPTPSPTTSTTSPTP 1489
>YHCR_BACSU (P54602) Endonuclease yhcR precursor (EC 3.1.31.-)| Length = 1217 Score = 30.0 bits (66), Expect = 3.0 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 18/94 (19%) Frame = -1 Query: 331 FYNEAAGVRVRPGELVPLARHALAVPLHMPLT------------------IELDIRHGGS 206 F +EA V EL A+AV HM E+D+ Sbjct: 765 FTDEATAVNKAAEELKKKGVKAIAVLAHMSAEQNGNAITGESADLANKTDSEIDVIFAAH 824 Query: 205 GDEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVT 104 ++V GE+ K + G+ +GV D E + T Sbjct: 825 NHQVVNGEVNGKLIVQAFEYGKAIGVVDVEIDKT 858
>PAP2_YEAST (P53632) Poly(A) RNA polymerase protein 2 (EC 2.7.7.-) (DNA| polymerase sigma) (DNA polymerase kappa) (Topoisomerase 1-related protein TRF4) Length = 584 Score = 30.0 bits (66), Expect = 3.0 Identities = 12/45 (26%), Positives = 27/45 (60%) Frame = +2 Query: 221 NVKLNRERHVQRHGKRMPRQGDQLPRSHAHSSGLVVEEHTAEIEQ 355 ++ LN E V+ R ++ ++LP+ H + G++V EH ++ ++ Sbjct: 37 SISLNDENEVEILPSRNEQETNKLPKDHVTADGILVLEHKSDDDE 81
>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) Length = 790 Score = 30.0 bits (66), Expect = 3.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 274 SPRGPAPQVARALQRPRCRRAHSRNRTACCEQRSC 378 S R P+ ++ RP+C RA +N AC + C Sbjct: 699 SQRRDVPRTTQSTSRPKCARASCKNILACRSEELC 733
>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger protein A20) Length = 790 Score = 30.0 bits (66), Expect = 3.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 274 SPRGPAPQVARALQRPRCRRAHSRNRTACCEQRSC 378 S R P+ ++ RP+C RA +N AC + C Sbjct: 699 SQRRDVPRTTQSTSRPKCARASCKNILACRSEELC 733
>2A5D_YEAST (P38903) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit delta isoform (PP2A, B subunit, B' delta isoform) (Protein RTS1) (Protein SCS1) Length = 757 Score = 29.6 bits (65), Expect = 3.9 Identities = 24/91 (26%), Positives = 38/91 (41%) Frame = +3 Query: 165 AVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGTSSPGRTRTPAASL*KSTQP 344 A +SSS T G SG+ + +SS +T+T S+ Sbjct: 45 ASASSSSHGTTHSSASSTGSKSTTEKGKQSGSVPSQGKHHSSSTSKTKTATTPSSSSSSS 104 Query: 345 KSNSLLRATILPTRTTSSRDCRPASFTSTRP 437 +S+S+ R+ T+ TSSR + S S +P Sbjct: 105 RSSSVSRSGSSSTKKTSSRKGQEQSKQSQQP 135
>TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylammeline| chlorohydrolase) Length = 476 Score = 29.6 bits (65), Expect = 3.9 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 258 TASACLAKGTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRP 437 T+++ K ++ PG +PA+S T KS+S + P TSS C S ++ P Sbjct: 40 TSTSAAPKSSTPPGWQCSPASSTPTPTSHKSSS---GVVHPMTATSSNGCTTCSIPASLP 96
>MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS| Length = 892 Score = 29.6 bits (65), Expect = 3.9 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +2 Query: 320 LVVEEHTAEIEQLAASNDPADXNHFXSGLQASKLHIDPALDA 445 +VV+E EIE+ N+ F Q+SK PALDA Sbjct: 815 IVVKEEPIEIEETKVDNEEESQLSFFGAEQSSKKQDKPALDA 856
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 29.3 bits (64), Expect = 5.1 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 15/113 (13%) Frame = +3 Query: 105 VTSNSASLTP-------TRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTA 263 +TS++ S TP + PV PS + SSS S + T+ Sbjct: 818 ITSSAPSSTPFSSSTESSSVPVPTPSSSTTESSSAPVSSSTTESSVAPVPTPSSSSNITS 877 Query: 264 SACLAKGTSSP------GRTRTPAASL*KSTQPKSN--SLLRATILPTRTTSS 398 SA + SS G T TP++S +Q +++ S TI+PT+TT+S Sbjct: 878 SAPSSIPFSSTTESFSTGTTVTPSSSKYPGSQTETSVSSTTETTIVPTKTTTS 930
>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 732 Score = 29.3 bits (64), Expect = 5.1 Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 6/118 (5%) Frame = +3 Query: 84 GYSDHKIVTSN-SASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCS-- 254 G + K TS S + P+ RP P+ L SS PL + S Sbjct: 359 GNDEKKAKTSTPSCAKAPSHRPCLSPTRPTLGSSDPLIKPSSPAVSPEPATSPKHVSSVT 418 Query: 255 ---GTASACLAKGTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPAS 419 G+ K + G+T A+ + P AT +P +TT S P S Sbjct: 419 PRNGSPGTKQMKLKGADGKTGAKIATPRGAASPAQKGTSNATRIPAKTTPSPKTPPGS 476
>YIA2_RHISP (P17984) Insertion element ISR1 hypothetical 17 kDa protein A2| Length = 161 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 13/52 (25%) Frame = +1 Query: 277 PRGPAPQVARALQRPR-------------CRRAHSRNRTACCEQRSCRXEPL 393 P P VA LQR CR AH R ACC C PL Sbjct: 92 PLAPCGGVATRLQRAASALEARVADAAGLCRSAHRTQRPACCVVDGCADRPL 143
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/108 (19%), Positives = 41/108 (37%) Frame = +3 Query: 108 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGT 287 T+++ S TPT S++P T S + + ++ + Sbjct: 190 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTP 249 Query: 288 SSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTST 431 ++ + TP S +T S + +T T TTS+ P + T++ Sbjct: 250 TTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTS 297
>SLU7_CRYNE (Q5KII3) Pre-mRNA-splicing factor SLU7| Length = 574 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 128 DTNKTSCMEAVDGSFELKLASNNFISGSTMTNVKLNRERHVQRHGKR 268 DTNKTS + G L+ N +SG T V+ +R + + +R Sbjct: 345 DTNKTSILAKYGGEEHLQRMPNELLSGQTENYVEYSRSGQIIKGRER 391
>SYFB_SALRD (Q2RYT3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 830 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 24 EFHIVFVVDSSPLAHMGVYQGYSDHKIVTSNSASLTPTRRPVWRPSMAVLNSSSPL 191 EFH +VDS+ Y+ S +V + A L P +PV A+ + +PL Sbjct: 714 EFHWAALVDSATAEQHRDYEPVSRFPVVDRDLAVLVPADQPVGPLQRAIREAGAPL 769
>ATPA_SCHPO (P24487) ATP synthase alpha chain, mitochondrial precursor (EC| 3.6.3.14) Length = 536 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -1 Query: 343 GCVLFYNEAAGVRVRPGELVPLARHALAVPL 251 GCVLF N+ VR GE+V RH + VP+ Sbjct: 100 GCVLFGNDRL---VREGEVVKRTRHIVDVPV 127
>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)| Length = 567 Score = 28.5 bits (62), Expect = 8.7 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Frame = +3 Query: 108 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGT 287 TS+S + T T + ++SSS + +S S T S+ + T Sbjct: 320 TSSSTTTTTTT------TSTTISSSSSSSKTSKTSTTSTTSSSISSTTSSTTSSTSSSST 373 Query: 288 SSPGRTRTPAASL*K-----STQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 446 SS + T +++ ST P S++ L ++ + T ++S S +T TP Sbjct: 374 SSSTSSTTSSSTTSSQISTTSTAPTSSTSLSSSTISTSASTSDTTSVTSSETTPVVTP 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,234,984 Number of Sequences: 219361 Number of extensions: 1281702 Number of successful extensions: 4475 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4316 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4470 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
