ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11i08 |
|---|---|
| Clone Library Name | barley_pub |
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 39.3 bits (90), Expect = 0.011 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Frame = +3 Query: 345 PTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPL---ETGLRDLCHSLP*RCWT 515 P + P + + A SAP P PP+P P P+ ET + +P + Sbjct: 98 PPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISS 157 Query: 516 AVPAPRSRPPKSQSDPWDCSLPRAPSGADL 605 + PAP S P SQ D + + +G++L Sbjct: 158 STPAPDSAPVGSQGDVYGQAASNLAAGSNL 187
>GAK_MOUSE (Q99KY4) Cyclin G-associated kinase (EC 2.7.11.1)| Length = 1305 Score = 33.9 bits (76), Expect = 0.44 Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Frame = +3 Query: 330 TTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPP---SPCPRDRPLETGLRDLCHSLP 500 T P P + AGH AP GP + QT P L + L+ L LP Sbjct: 1042 TATPGPASIPVPEGTLFSSAGHPAPPGP-NPSQTKSQNLDPFADLSDLSSSLQGLPAGLP 1100 Query: 501 *RCWTAVPAPRSRPPKSQSDPWDCSLPRAPSGADLPXSWPXGHXSD 638 + PAP + + PW + P AP + P + P S+ Sbjct: 1101 AGGFVGAPAPTQK----SNSPWQANRPTAPGTSWTPQAKPAPRASE 1142
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 33.5 bits (75), Expect = 0.58 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 5/108 (4%) Frame = +3 Query: 336 LARPTRSRSPPAAQRAGAG-----HSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP 500 +A P SPP A+ A H P G + + PP P P P G+R + Sbjct: 389 IAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPP---GIRP-SSPVA 444 Query: 501 *RCWTAVPAPRSRPPKSQSDPWDCSLPRAPSGADLPXSWPXGHXSDLP 644 P+ P + P +P +P LP S P H S LP Sbjct: 445 VAALAHPPSGLHPAPSTAPGPHAPLMPPSPPSQVLPASEPKRHPSTLP 492
>IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain disease protein)| (HDC) Length = 290 Score = 33.5 bits (75), Expect = 0.58 Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Frame = +3 Query: 444 CPRDRPLETGLRDLCHSLP*-----RCWTAVPAPRSRPPKSQSDPWDCSLPRAPSGADLP 608 C L+T L D H+ P C T P PR PKS P C P D P Sbjct: 7 CTVSSELKTPLGDTTHTCPRCPEPKSCDTPPPCPRCPEPKSCDTPPPCPRCPEPKSCDTP 66 Query: 609 XSWPXGHXSDLPQGP 653 P +L GP Sbjct: 67 PPCPRCPAPELLGGP 81
>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) (Verprolin homology domain-containing protein 1) Length = 559 Score = 33.1 bits (74), Expect = 0.76 Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Frame = +3 Query: 336 LARPTRSRSPPAAQRAGAG-----HSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP 500 +A P SPP A+ A H P G + + PP P P P G+R S P Sbjct: 389 IAPPLVQPSPPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPP---GIRP---SSP 442 Query: 501 *RCWTAVPAPRS---RPPKSQSDPWDCSLPRAPSGADLPXSWPXGHXSDLP 644 TA+ P S P + P +P +P +P S P H S LP Sbjct: 443 VTV-TALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRHPSTLP 492
>DEND_HUMAN (O94850) Dendrin| Length = 657 Score = 33.1 bits (74), Expect = 0.76 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 7/88 (7%) Frame = +3 Query: 354 SRSPPAAQRAGAGHS--APAGPIDWMQTPPSPCPRDRPLETGLRDLCHS----LP*RCWT 515 S S P A+ G+ + APAG P P PR R G R+ P +CW Sbjct: 275 SDSHPQAKATGSAGTEIAPAGSATAAPCAPHPAPRSRHHLKGSREGKEGEQIWFP-KCW- 332 Query: 516 AVPAPRSRPPK-SQSDPWDCSLPRAPSG 596 +P+P+ +PP+ SQ+ P P AP G Sbjct: 333 -IPSPKKQPPRHSQTLP----RPWAPGG 355
>MYCN_RAT (Q63379) N-myc proto-oncogene protein| Length = 462 Score = 32.7 bits (73), Expect = 0.99 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -1 Query: 661 HGHGPCGRSDXCPXGQLXGRSAPDGALGSEQSHG 560 HGHGP G S CP + S+ ALG S G Sbjct: 137 HGHGPPGASSSCPAPGVGASSSGGRALGGSASAG 170
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 32.7 bits (73), Expect = 0.99 Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 12/110 (10%) Frame = +3 Query: 327 RTTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*R 506 R T +P R PPA R G P P P PR RP R S P Sbjct: 484 RVTFNQP---RVPPATPRPPTGFLPTRRPEPRPDPGPQPEPRPRPEP---RPRPESRPRP 537 Query: 507 CWTAVPAPRSRP---------PKSQSDPW-DCSLPRAP--SGADLPXSWP 620 P PR +P P+ +S PW + LP P +G ++P S P Sbjct: 538 EPRPRPEPRPQPESQPRPESRPRPESQPWPEFPLPSIPAWTGPEIPESGP 587
>JPH2_RABIT (Q9GKY7) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 694 Score = 32.7 bits (73), Expect = 0.99 Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 10/107 (9%) Frame = +3 Query: 363 PPAAQRAGAGHSAPAGP------IDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVP 524 P AGAG +PA P I+ +Q PP+P R E L HS R TA P Sbjct: 524 PATPAAAGAGRRSPARPASEHMAIEALQAPPAP---SREPEVALYRGYHSYAVR--TAPP 578 Query: 525 AP---RSRPPKSQSDPWDCSLPRAPSGADLPXSWPX-GHXSDLPQGP 653 AP P +DP S P +P+ A P P G+ P+ P Sbjct: 579 APPPFEDDPQPEAADP--DSAPASPATA--PGQAPALGNPEPAPESP 621
>DYN3_HUMAN (Q9UQ16) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)| Length = 859 Score = 32.3 bits (72), Expect = 1.3 Identities = 33/97 (34%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Frame = +3 Query: 276 PSPF*DLVSTRRRGAN*RTTLARPTRSRSP-PAAQRAGAGHSAPAGPIDWMQTPPSPCPR 452 PSP T +R LARPT R P PA G AP P PP P Sbjct: 762 PSP------TTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPSSS 815 Query: 453 DRPLETGLRDLCHSLP*RCWTAVPAPRSRPPKSQSDP 563 D G S P R +VP+ RPP S + P Sbjct: 816 D---SFGAPPQVPSRPTRAPPSVPS--RRPPPSPTRP 847
>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa| protein) Length = 537 Score = 32.3 bits (72), Expect = 1.3 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 13/100 (13%) Frame = +3 Query: 348 TRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLC------HSLP*RC 509 T +P AA++A A APA + P P P+++P T H+ P + Sbjct: 2 TGKTAPAAAKKAPAAKKAPAPA---SKKAPEPAPKEKPAPTPKEGHAPTPKEEHAPPPKE 58 Query: 510 WTA-------VPAPRSRPPKSQSDPWDCSLPRAPSGADLP 608 A PAP + P + P D P AP+ P Sbjct: 59 EHAPPPKEEHAPAPAAETPPAPEHPPDAEQPAAPAAEHAP 98
>BETA3_MESAU (O09029) Protein BETA3| Length = 367 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/35 (45%), Positives = 16/35 (45%) Frame = +3 Query: 522 PAPRSRPPKSQSDPWDCSLPRAPSGADLPXSWPXG 626 P PR RP S S P C P P GA L P G Sbjct: 50 PPPRERPASSSSSPLGCFEPADPEGAGLLLPPPGG 84
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 32.3 bits (72), Expect = 1.3 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 3/107 (2%) Frame = +3 Query: 342 RPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAV 521 +P + +P A G G SAP P+ Q P PCP P G Sbjct: 118 KPGKPGAPGAPGNPGKGASAPCEPV--TQPPCQPCPGGPPGPAG---------------- 159 Query: 522 PAPRSRPPKSQSDPWDCSLPRAPSGADLPX-SWPXGH--XSDLPQGP 653 PA PP +P + P P A P + P G+ P GP Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGP 206
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 31.6 bits (70), Expect = 2.2 Identities = 35/104 (33%), Positives = 40/104 (38%), Gaps = 4/104 (3%) Frame = +3 Query: 354 SRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*R----CWTAV 521 S SP A AGAG +APA P P R RP G + P R A Sbjct: 64 SGSPAGA--AGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAP 121 Query: 522 PAPRSRPPKSQSDPWDCSLPRAPSGADLPXSWPXGHXSDLPQGP 653 PA + RPP S +P A + A P P G P GP Sbjct: 122 PAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK--PAGP 163
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 31.6 bits (70), Expect = 2.2 Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Frame = +3 Query: 354 SRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVPAPR 533 S +PP+ G +PA P PPSP P P + P PAP Sbjct: 57 SPAPPSPAPPSPGPPSPAPPSPPSPAPPSPAP-PSPAPPSPAPPSPAPP------SPAPP 109 Query: 534 SRPPKSQSDPWDCS-LPRAPSGADLPXSWPXGHXSDLPQGP*P 659 S P S + P S P +PS P P LP P P Sbjct: 110 SPAPPSPAPPSPPSPAPPSPSPPAPPSPSPPSPAPPLPPSPAP 152 Score = 30.4 bits (67), Expect = 4.9 Identities = 24/98 (24%), Positives = 29/98 (29%) Frame = +3 Query: 360 SPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVPAPRSR 539 SPP+ AP P+ PPSP P P P + Sbjct: 227 SPPSPAPPSPSPPAPPSPVPPSPAPPSPAPPS----------------------PKPPAP 264 Query: 540 PPKSQSDPWDCSLPRAPSGADLPXSWPXGHXSDLPQGP 653 PP P P P+ +P S P S P P Sbjct: 265 PPPPSPPPPPPPRPPFPANTPMPPSPPSPPPSPAPPTP 302 Score = 29.6 bits (65), Expect = 8.3 Identities = 31/108 (28%), Positives = 36/108 (33%), Gaps = 1/108 (0%) Frame = +3 Query: 339 ARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTA 518 A P+ + PA AP P PPSP P P P + Sbjct: 82 APPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPP-----------SPAPPSPS 130 Query: 519 VPAPRSRPPKSQSDPWDCS-LPRAPSGADLPXSWPXGHXSDLPQGP*P 659 PAP S P S + P S P +PS P P S P P P Sbjct: 131 PPAPPSPSPPSPAPPLPPSPAPPSPSPPVPPSPSPPVPPSPAPPSPTP 178
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 31.6 bits (70), Expect = 2.2 Identities = 25/86 (29%), Positives = 35/86 (40%) Frame = +3 Query: 363 PPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVPAPRSRP 542 PP+ + P P + +PPSP P P + P T +P PR R Sbjct: 139 PPSPPTPRSSTPIPHPPRRSLPSPPSPSPSPSPSPS-------PSPSPRSTPIPHPRKRS 191 Query: 543 PKSQSDPWDCSLPRAPSGADLPXSWP 620 P S S SL ++PS ++ P P Sbjct: 192 PASPSP--SPSLSKSPSPSESPSLAP 215
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 31.6 bits (70), Expect = 2.2 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +3 Query: 345 PTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVP 524 P +R+ P ++ G+ HS+PAGP PP+ + E LR+ ++P +P Sbjct: 899 PRLARALPTSKAEGSLHSSPAGPSSSKGQPPA---EEEEGERALREKAVNIP---LDPLP 952 Query: 525 APRSRPPKSQ 554 R P+SQ Sbjct: 953 GHPLRDPRSQ 962
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 31.2 bits (69), Expect = 2.9 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Frame = +3 Query: 354 SRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVPA-- 527 +R+ P R+ + +P G + P SP P L C + C TA + Sbjct: 185 TRTGPRLSRSSSETRSPGGTVQ----PKSPAP--------LAARCSASRAGCPTAAGSLL 232 Query: 528 PRSRPPKSQSDPWDCSLPRAPSGADLP 608 P RPP S + + P APS LP Sbjct: 233 PAPRPPASSASSPQAAAPAAPSATRLP 259
>RPIA_ENTFA (Q839H2) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 226 Score = 31.2 bits (69), Expect = 2.9 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%) Frame = +1 Query: 403 RLVP*IGCKPLPVHV-----QEIVHLRQASGIYATLCRNAAGQ 516 ++V +G PLPV V +++VHL + G + TL NAAG+ Sbjct: 121 KMVDDLGAFPLPVEVVPYGSRQLVHLFEEKGYHPTLRLNAAGE 163
>POLG_CXB1J (P08291) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2181 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +3 Query: 330 TTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQT 431 T ++PT S S PA A GH++ P D MQT Sbjct: 586 TVSSKPTNSESIPALTAAETGHTSQVVPSDTMQT 619
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 31.2 bits (69), Expect = 2.9 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Frame = +3 Query: 327 RTTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPP---SPCPRDRPLETGLRDLCHSL 497 R A P SPP + A + S P P+ + T P P P PL + Sbjct: 4629 RQLSAPPPEEPSPPPSPLAPSPASPPTEPLVELPTEPLAEPPVPSPLPLASSPE------ 4682 Query: 498 P*RCWTAVPAPRSRPPKSQSD 560 +A P PR+RPP+ D Sbjct: 4683 -----SARPKPRARPPEEGED 4698
>JPH2_MOUSE (Q9ET78) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 696 Score = 31.2 bits (69), Expect = 2.9 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 11/111 (9%) Frame = +3 Query: 345 PTRSRSPPAAQRAGAGHSAPAGP------IDWMQTPPSPCPRDRPLETGLRDLCHSLP*R 506 P S PA GAG +PA P I+ +Q PP+P + E + HS R Sbjct: 509 PGGEGSRPATPSDGAGRRSPARPASEHMAIEALQPPPAP---SQEPEVAMYRGYHSYAVR 565 Query: 507 CWTAVPAPRSRPPKSQSDP-----WDCSLPRAPSGADLPXSWPXGHXSDLP 644 P P + + +P S P +P A +P P S +P Sbjct: 566 TGPPEPPPLEDEQEPEPEPEPEVRRSDSAPPSPVSATVPEEEPPAPRSPVP 616
>GRFA_VACCP (Q86607) Growth factor precursor (Secreted epidermal growth| factor-like) (Vaccinia growth factor) Length = 140 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +1 Query: 451 EIVHLRQASGIYATLCRNAAGQQCLHLALV----LQNPNLIHGIAHFPEPHLVLI 603 + +H R G+Y G +C H+ LV +NPN ++ P P +VL+ Sbjct: 57 DCIHARDIDGMYCRCSHGYTGIRCQHVVLVDYQRSENPNTT--TSYIPSPGIVLV 109
>TF65_CHICK (P98152) Transcription factor p65 (Nuclear factor NF-kappa-B p65| subunit) Length = 558 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +3 Query: 354 SRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDL 485 SR PPA Q+ + AP P+ + PP+ P PL L L Sbjct: 342 SRPPPAPQQPPSMVGAPPAPLFPLGVPPASSPTPEPLAEALLQL 385
>M3K13_HUMAN (O43283) Mitogen-activated protein kinase kinase kinase 13 (EC| 2.7.11.25) (Mixed lineage kinase) (MLK) (Leucine zipper-bearing kinase) Length = 966 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 11/60 (18%) Frame = +3 Query: 507 CWTAVPAPRSRPPKSQSDPWDCSL-----------PRAPSGADLPXSWPXGHXSDLPQGP 653 CW + S P K Q+ PW C P D+P + P G DL + P Sbjct: 707 CWRS-----SEPDKGQAGPWGCCQADAYDPCLQCRPEQYGSLDIPSAEPVGRSPDLSKSP 761
>CSKI2_MOUSE (Q8VHK1) Caskin-2| Length = 1201 Score = 30.8 bits (68), Expect = 3.7 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 10/100 (10%) Frame = +3 Query: 174 QTLPKLAHTRATPALLLFSIKKK--------DTCFAMGCGCSPSPF*DLVSTRRRGAN*- 326 +T P L TR TP F+++ + + G + P D S + GA Sbjct: 839 RTSPSLTPTRGTPRSQSFALRARRKGPPPPPPKRLSSVSGSTEPPSLDGTSGPKEGATGP 898 Query: 327 -RTTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSP 443 R TL+ PT P G SAP GP+ + P P Sbjct: 899 RRRTLSEPTGPSESP-------GPSAPTGPVSDTEEEPGP 931
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)| (Fragment) Length = 290 Score = 30.8 bits (68), Expect = 3.7 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Frame = +3 Query: 333 TLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPS-PCPRDRPLETGLRDLCHSLP*RC 509 ++ RP + SPPA Q S P P TPPS P P + LR+ P Sbjct: 195 SIVRPPVATSPPAPQEPVPVSSPPRVP-----TPPSTPVPLPEKRRSILRE-----PTFR 244 Query: 510 WTA----VPAPRSRPPKSQSDPWDCSLPRAPS 593 WT+ +P P PP + S P P PS Sbjct: 245 WTSLTRELPPPPPAPPPAPSPP---PAPATPS 273
>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1575 Score = 30.8 bits (68), Expect = 3.7 Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 6/109 (5%) Frame = +3 Query: 192 AHTRATPALLLFSIKKKDTCFAMGCGCSPSPF*DLVSTRRRGAN*RTTLARPTRSRSPPA 371 +H RA+ L + K + + G P P + A P +S PP Sbjct: 1210 SHARASAGRLTPESQSKTSETSKGSTFLPEPL-------------KPQAAFPPQSSLPPP 1256 Query: 372 AQRAG------AGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP 500 AQR A +GP ++TPP P PR R HSLP Sbjct: 1257 AQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRS--------SHSLP 1297
>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1| Length = 574 Score = 30.4 bits (67), Expect = 4.9 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Frame = +3 Query: 360 SPPAAQRAGAGHSAPA----GPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVPA 527 +PPA A G SAPA G TPP P P P + L S P PA Sbjct: 387 NPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP-PSAPPSLPPSAPPSLPMGAPA 445 Query: 528 PRSRPPKSQ-SDPWDCSLPRAP 590 PP + + P +P AP Sbjct: 446 APPLPPSAPIAPPLPAGMPAAP 467
>M3K13_PONPY (Q5R8X7) Mitogen-activated protein kinase kinase kinase 13 (EC| 2.7.11.25) Length = 966 Score = 30.4 bits (67), Expect = 4.9 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 11/60 (18%) Frame = +3 Query: 507 CWTAVPAPRSRPPKSQSDPWDCSL-----------PRAPSGADLPXSWPXGHXSDLPQGP 653 CW S P K Q+ PW C P D+P + P G DL + P Sbjct: 707 CWRG-----SEPDKDQAGPWGCCQADPYDPCLQCRPEQYGSLDIPSAEPVGRSPDLSKSP 761
>TRPV5_RAT (Q9JIP0) Transient receptor potential cation channel subfamily V| member 5 (TrpV5) (osm-9-like TRP channel 3) (OTRPC3) (Epithelial calcium channel 1) (ECaC1) (Calcium transporter 2) (CaT2) Length = 723 Score = 30.4 bits (67), Expect = 4.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 487 ATLCRNAAGQQCLHLALVLQNPNLIHGI 570 +TLC GQ LH+A++ QN NL+ + Sbjct: 103 STLCEPFVGQTALHIAIMNQNVNLVRAL 130
>TRPV5_HUMAN (Q9NQA5) Transient receptor potential cation channel subfamily V| member 5 (TrpV5) (osm-9-like TRP channel 3) (OTRPC3) (Epithelial calcium channel 1) (ECaC) (ECaC1) (Calcium transport protein 2) (CaT2) Length = 729 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 490 TLCRNAAGQQCLHLALVLQNPNLIHGI 570 T C AGQ LH+A+V QN NL+ + Sbjct: 110 TTCEAFAGQTALHIAVVNQNVNLVRAL 136
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 30.4 bits (67), Expect = 4.9 Identities = 35/127 (27%), Positives = 43/127 (33%) Frame = +3 Query: 273 SPSPF*DLVSTRRRGAN*RTTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPR 452 +PSP S A R RP+ + PAAQ+ A + P + P P P Sbjct: 75 APSPAQAGPSQAAPAAGDRAAAPRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTPGPKPA 134 Query: 453 DRPLETGLRDLCHSLP*RCWTAVPAPRSRPPKSQSDPWDCSLPRAPSGADLPXSWPXGHX 632 RP + P A PA S P + S P P GA P G Sbjct: 135 PRPAPAAPE---FTAP----PAAPAAPSTPAPAPSGP-------KPGGARPGAPKPGGAR 180 Query: 633 SDLPQGP 653 P GP Sbjct: 181 ---PSGP 184
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 30.0 bits (66), Expect = 6.4 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Frame = +3 Query: 348 TRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVPA 527 + + PP+ Q AP P DW+ P+ PRD + GL + P +P Sbjct: 2623 SEASGPPSPQSPLLEKVAPGRPRDWLS--PTSSPRDVTVTPGL-----AAP----ITLPG 2671 Query: 528 PR--SRPPKSQSDPWDCSLPRAPSGADLPXSWPXGHXSDLPQ 647 PR +RP S R+P + P WP LPQ Sbjct: 2672 PRLMARPYFGAETRASESPDRSPGSS--PRPWPKDSLELLPQ 2711
>TAF1L_HUMAN (Q8IZX4) Transcription initiation factor TFIID 210 kDa subunit| (TBP-associated factor 210 kDa) (TAF(II)210) (TBP-associated factor 1-like) Length = 1826 Score = 30.0 bits (66), Expect = 6.4 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = -2 Query: 549 ILEDESEVQALLSSSVTAESGIDPGGLSQVDDLLDMDWEGFASNLWDQPAQNGLLQPAEP 370 + +DES + L S+ T E + G ++ D+D EG+ D ++G +P P Sbjct: 1683 VFQDESNLSVLDISTATPEKQMCQGQGRLGEEDSDVDVEGY-----DDEEEDGKPKPPAP 1737 Query: 369 QVATGSESDELESFV 325 + G +DE E V Sbjct: 1738 EGGDGDLADEEEGTV 1752
>CSF3_MOUSE (P09920) Granulocyte colony-stimulating factor precursor (G-CSF)| Length = 208 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/68 (29%), Positives = 28/68 (41%) Frame = -2 Query: 573 SNPMDQIGILEDESEVQALLSSSVTAESGIDPGGLSQVDDLLDMDWEGFASNLWDQPAQN 394 S + Q L L + A SGI P L+ DLL +D FA+ +W Q Sbjct: 102 SQALQQTQCLSQLHSGLCLYQGLLQALSGISPA-LAPTLDLLQLDVANFATTIWQQMENL 160 Query: 393 GLLQPAEP 370 G+ +P Sbjct: 161 GVAPTVQP 168
>ZO2_HUMAN (Q9UDY2) Tight junction protein ZO-2 (Zonula occludens 2 protein)| (Zona occludens 2 protein) (Tight junction protein 2) Length = 1190 Score = 30.0 bits (66), Expect = 6.4 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Frame = -1 Query: 592 DGALGSEQSHGSDWDFG-----GRERGAGTAVQQRYGREWHRSRRP 470 D + G G D DFG R+R G ++ Q Y R +HR+ P Sbjct: 214 DRSRGRSLERGLDHDFGPSRDRDRDRSRGRSIDQDYERAYHRAYDP 259
>DPY7_CAEEL (P34688) Cuticle collagen dpy-7 precursor (Protein dumpy-7)| Length = 318 Score = 30.0 bits (66), Expect = 6.4 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 345 PTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRP 461 P + PP + + +S P GPI M P P PR P Sbjct: 222 PRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEP 260
>DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (EC 3.6.1.-)| (DEAH box protein 37) Length = 1157 Score = 30.0 bits (66), Expect = 6.4 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = +3 Query: 366 PAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVPAPRSRPP 545 PAA+ A AG P+ PP+P P +P+ G+ T P P + PP Sbjct: 183 PAAEPAEAGVGTTVAPL-----PPAPAPSSQPVPAGM------------TVPPPPAAAPP 225
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = +3 Query: 345 PTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRPLETGLRDLCHSLP*RCWTAVP 524 P +R+ P ++ G+ HS+P GP + P P + E LR+ ++P +P Sbjct: 890 PRLARALPTSKPEGSLHSSPVGPSSSKGSGPPPTEEEEG-ERALREKAVNIP---LDPLP 945 Query: 525 APRSRPPKSQ 554 R P+SQ Sbjct: 946 GHPLRDPRSQ 955
>TRPV5_MOUSE (P69744) Transient receptor potential cation channel subfamily V| member 5 (TrpV5) (osm-9-like TRP channel 3) (OTRPC3) (Epithelial calcium channel 1) (ECaC1) (Calcium transport protein 2) (CaT2) Length = 723 Score = 30.0 bits (66), Expect = 6.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 487 ATLCRNAAGQQCLHLALVLQNPNLIHGI 570 +TLC GQ LH+A++ QN NL+ + Sbjct: 103 STLCEPFVGQTALHIAVMNQNVNLVRAL 130
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.0 bits (66), Expect = 6.4 Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 9/106 (8%) Frame = +3 Query: 273 SPSPF*DLVSTRRRGAN*RTTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPR 452 SPSP T RG R+ PTR R P+ P P + PSP PR Sbjct: 530 SPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPP--RRRTPSPPPR 587 Query: 453 DR---------PLETGLRDLCHSLP*RCWTAVPAPRSRPPKSQSDP 563 R P++ R S P + TA P P PPK ++ P Sbjct: 588 RRSPSPRRYSPPIQ---RRYSPSPPPKRRTASPPP---PPKRRASP 627
>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)| Length = 413 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = +3 Query: 345 PTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRP 461 P +R P Q G G P + T PCPRD P Sbjct: 5 PEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDP 43
>FPG_SYNEN (P95744) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (FAPY-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 283 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Frame = +3 Query: 393 HSAPAGPIDWMQTPPSPCPRDR-----PLETGLRDLCHSLP*RCWTAVP 524 H +G + W+ TP PCP R P LR + RCW P Sbjct: 74 HLRMSGQLLWLTTPQPPCPHTRVRWFFPTRAELRFVDQRTFGRCWWLPP 122
>FPG_SYNEL (P59065) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (FAPY-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 283 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Frame = +3 Query: 393 HSAPAGPIDWMQTPPSPCPRDR-----PLETGLRDLCHSLP*RCWTAVP 524 H +G + W+ TP PCP R P LR + RCW P Sbjct: 74 HLRMSGQLLWLTTPQPPCPHTRVRWFFPTRAELRFVDQRTFGRCWWLPP 122
>GRFA_VACCV (P01136) Growth factor precursor (Secreted epidermal growth| factor-like) (Vaccinia growth factor) Length = 140 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +1 Query: 451 EIVHLRQASGIYATLCRNAAGQQCLHLALV----LQNPNLIHGIAHFPEPHLVLI 603 + +H R G+Y G +C H+ LV +NPN ++ P P ++L+ Sbjct: 57 DCIHARDIDGMYCRCSHGYTGIRCQHVVLVDYQRSENPNTT--TSYIPSPGIMLV 109
>GAK_RAT (P97874) Cyclin G-associated kinase (EC 2.7.11.1)| Length = 1305 Score = 29.6 bits (65), Expect = 8.3 Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 2/105 (1%) Frame = +3 Query: 330 TTLARPTRSRSPPAAQRAGAGHSAPAG--PIDWMQTPPSPCPRDRPLETGLRDLCHSLP* 503 T L P P + AGH AP G P P P L + L+ L LP Sbjct: 1042 TALPGPASMPVPEGTLFSSAGHPAPPGPNPSQTKSQNPDPFADLSDLSSSLQGLPAGLPA 1101 Query: 504 RCWTAVPAPRSRPPKSQSDPWDCSLPRAPSGADLPXSWPXGHXSD 638 + A + S W + P AP + P + P S+ Sbjct: 1102 GSFVGTSATTHKSNSS----WQTTRPTAPGTSWPPQAKPAPRASE 1142
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 29.6 bits (65), Expect = 8.3 Identities = 31/106 (29%), Positives = 44/106 (41%) Frame = +3 Query: 273 SPSPF*DLVSTRRRGAN*RTTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPR 452 +PSP + R A R +P + P AA+R A +AP GP + P P PR Sbjct: 70 APSP-----AQAARPAAPRPPAPKPAAAERPAAAERPAAAPAAP-GP----RPGPKPAPR 119 Query: 453 DRPLETGLRDLCHSLP*RCWTAVPAPRSRPPKSQSDPWDCSLPRAP 590 P + P +TA P+ + P + S P + P AP Sbjct: 120 PAPAAP-----APAAP--EFTAPPSAPAAPAAAASGPRPGARPGAP 158
>GRFA_VACCC (P20494) Growth factor precursor (Secreted epidermal growth| factor-like) (Vaccinia growth factor) Length = 142 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +1 Query: 451 EIVHLRQASGIYATLCRNAAGQQCLHLALV----LQNPNLIHGIAHFPEPHLVLI 603 + +H R G+Y G +C H+ LV +NPN ++ P P ++L+ Sbjct: 57 DCIHARDIDGMYCRCSHGYTGIRCQHVVLVDYQRSENPNTT--TSYIPSPGIMLV 109
>HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)| Length = 176 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +3 Query: 522 PAPRSRPPKSQSDPWDCSLPRAPSGADLPXSW-PXGHXSDLPQGP 653 P PR RPPK + P P++P P S P G +P+ P Sbjct: 106 PRPRGRPPKDPNAP-----PKSPKAKATPGSGRPRGRPKKVPRSP 145
>VTS1_GIBZE (Q4IBN1) Protein VTS1| Length = 617 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +3 Query: 330 TTLARPTRSRSPPAAQRAGAGHSAPAGPIDWMQTPPSPCPRDRP 461 T A T + PP+++ G+GHS A T PSP R RP Sbjct: 13 TPEANNTSTLRPPSSRAIGSGHSLRASADMASLTGPSPSNRIRP 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,141,014 Number of Sequences: 219361 Number of extensions: 2304447 Number of successful extensions: 8127 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 7454 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8061 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
