ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags11i08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 298 tcagcacgcgtcggagaggagccaactgacgaacgactctagctcgtccga 348 |||||| | ||| ||||||||||| || |||||||||| ||||||||||| Sbjct: 10679185 tcagcaggagtccgagaggagccagctcgcgaacgactcgagctcgtccga 10679235
>gb|AC092022.5| Homo sapiens BAC clone RP11-750F10 from 7, complete sequence Length = 170141 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 34 acatgcataaaatgcattgcaca 56 ||||||||||||||||||||||| Sbjct: 30550 acatgcataaaatgcattgcaca 30528
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 298 tcagcacgcgtcggagaggagccaactgacgaacgactctagctcgtccga 348 |||||| | ||| ||||||||||| || |||||||||| ||||||||||| Sbjct: 96099 tcagcaggagtccgagaggagccagctcgcgaacgactcgagctcgtccga 96149
>gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein gene, complete cds Length = 9589 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 298 tcagcacgcgtcggagaggagccaactgacgaacgactctagctcgtccga 348 |||||| | ||| ||||||||||| || |||||||||| ||||||||||| Sbjct: 6691 tcagcaggagtccgagaggagccagctcgcgaacgactcgagctcgtccga 6641
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Plus Query: 298 tcagcacgcgtcggagaggagccaactgacgaacgactctagctcgtccga 348 |||||| | ||| ||||||||||| || |||||||||| ||||||||||| Sbjct: 10677286 tcagcaggagtccgagaggagccagctcgcgaacgactcgagctcgtccga 10677336
>gb|AC012506.9| Homo sapiens BAC clone RP11-498O22 from 2, complete sequence Length = 197303 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 506 ctgctggacagcagtgcctgcac 528 ||||||||||||||||||||||| Sbjct: 10466 ctgctggacagcagtgcctgcac 10444
>gb|AY857105.1| HIV-1 isolate 6785343 from Australia, partial genome Length = 6077 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 225 ttttccataaagaaaaaagaca 246 |||||||||||||||||||||| Sbjct: 1473 ttttccataaagaaaaaagaca 1494
>gb|AC144780.1| Pan troglodytes BAC clone RP43-2J12 from 7, complete sequence Length = 191540 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 gagatcgtccacttgagacag 471 ||||||||||||||||||||| Sbjct: 58139 gagatcgtccacttgagacag 58159
>dbj|AK033695.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130222O14 product:unclassifiable, full insert sequence Length = 1657 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 576 cttcccagagccccatctggtgctg 600 ||||||||||||||||||| ||||| Sbjct: 205 cttcccagagccccatctgttgctg 181
>gb|AC010843.10|AC010843 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR08A22, complete sequence Length = 170914 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gctttgctattgttttccata 233 ||||||||||||||||||||| Sbjct: 117592 gctttgctattgttttccata 117612
>gb|AC010995.11|AC010995 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR30C16, complete sequence Length = 185810 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gctttgctattgttttccata 233 ||||||||||||||||||||| Sbjct: 19930 gctttgctattgttttccata 19950
>gb|AC130004.4| Homo sapiens 3 BAC RP11-237K2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118699 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tattgttttccataaagaaaa 240 ||||||||||||||||||||| Sbjct: 89158 tattgttttccataaagaaaa 89138
>gb|AE003492.3| Drosophila melanogaster chromosome X, section 44 of 74 of the complete sequence Length = 296756 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gctttgctattgttttccata 233 ||||||||||||||||||||| Sbjct: 269333 gctttgctattgttttccata 269353
>gb|AC135863.4| Mus musculus BAC clone RP23-453H18 from 1, complete sequence Length = 197162 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 taaagaaaaaagacacctgct 252 ||||||||||||||||||||| Sbjct: 113179 taaagaaaaaagacacctgct 113159
>emb|AL831761.9| Mouse DNA sequence from clone RP23-318H16 on chromosome 4, complete sequence Length = 179556 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 576 cttcccagagccccatctggtgctg 600 ||||||||||||||||||| ||||| Sbjct: 133713 cttcccagagccccatctgttgctg 133737
>gb|DQ025393.1| HIV-1 isolate yB200 from French Guiana reverse transcriptase (pol) gene, partial cds Length = 577 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 58 tgtttgccataaagaaaaaagaca 81
>gb|DQ025277.1| HIV-1 isolate pF103294 from Puerto Rico reverse transcriptase (pol) gene, partial cds Length = 577 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 58 tgtttgccataaagaaaaaagaca 81
>gb|DQ025273.1| HIV-1 isolate pF102123 from Puerto Rico reverse transcriptase (pol) gene, partial cds Length = 577 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 58 tgtttgccataaagaaaaaagaca 81
>gb|DQ025236.1| HIV-1 isolate pE94473 from Puerto Rico reverse transcriptase (pol) gene, partial cds Length = 577 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 58 tgtttgccataaagaaaaaagaca 81
>gb|DQ025124.1| HIV-1 isolate pE86074 from Puerto Rico reverse transcriptase (pol) gene, partial cds Length = 577 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 58 tgtttgccataaagaaaaaagaca 81
>gb|DQ025096.1| HIV-1 isolate pE84849 from Puerto Rico reverse transcriptase (pol) gene, partial cds Length = 577 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 58 tgtttgccataaagaaaaaagaca 81
>gb|DQ025040.1| HIV-1 isolate pE83029 from Puerto Rico reverse transcriptase (pol) gene, partial cds Length = 577 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 58 tgtttgccataaagaaaaaagaca 81
>ref|XM_510796.1| PREDICTED: Pan troglodytes similar to beta-1,4-mannosyltransferase; beta-1,4 mannosyltransferase (LOC453895), mRNA Length = 1318 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agcttccacagcaagtacat 37 |||||||||||||||||||| Sbjct: 353 agcttccacagcaagtacat 334
>gb|AF253304.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 699 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 158 tgtttgccataaagaaaaaagaca 181
>gb|AF253303.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 717 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 176 tgtttgccataaagaaaaaagaca 199
>gb|AF253302.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 720 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AF253301.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 696 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 155 tgtttgccataaagaaaaaagaca 178
>gb|AF253300.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 720 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AF253298.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 720 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AF253294.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 699 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 158 tgtttgccataaagaaaaaagaca 181
>gb|AF253293.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 720 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AF253292.1| HIV-1 isolate 3 from United Kingdom reverse transcriptase (pol) gene, partial cds Length = 720 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ190993.1| HIV-1 strain B025RT from Brazil pol protein (pol) gene, partial cds Length = 598 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|DQ190955.1| HIV-1 strain B148RT from Brazil nonfunctional pol protein (pol) gene, partial sequence Length = 777 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 200 tgtttgccataaagaaaaaagaca 223
>gb|DQ204707.1| HIV-1 isolate patient CH61 from China gag protein (gag) gene, partial cds; and nonfunctional pol protein (pol) gene, partial sequence Length = 1249 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 704 tgtttgccataaagaaaaaagaca 727
>gb|AC165945.7| Mus musculus chromosome 15, clone RP24-375H14, complete sequence Length = 124395 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 taaagaaaaaagacacctgc 251 |||||||||||||||||||| Sbjct: 55080 taaagaaaaaagacacctgc 55061
>gb|AC161520.6| Mus musculus chromosome 7, clone RP24-282D19, complete sequence Length = 165232 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 accaacacatatttacaaga 166 |||||||||||||||||||| Sbjct: 9755 accaacacatatttacaaga 9736
>gb|AY701392.1| HIV-1 isolate RY1005 from USA reverse transcriptase (pol) gene, partial cds Length = 632 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|AY598814.1| HIV-1 isolate N20 from Venezuela reverse transcriptase (pol) gene, partial cds Length = 719 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 156 tgtttgccataaagaaaaaagaca 179
>gb|AY388798.1| HIV-1 from USA isolate P00038 nonfunctional pol protein (pol) gene, partial sequence Length = 1526 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 655 tgtttgccataaagaaaaaagaca 678
>gb|AY388797.1| HIV-1 from USA isolate P00038 nonfunctional pol protein (pol) gene, partial sequence Length = 1526 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 655 tgtttgccataaagaaaaaagaca 678
>gb|AY388796.1| HIV-1 from USA isolate P00038 nonfunctional pol protein (pol) gene, partial sequence Length = 1526 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 655 tgtttgccataaagaaaaaagaca 678
>gb|AY388717.1| HIV-1 from USA isolate P00009 nonfunctional pol protein (pol) gene, partial sequence Length = 1529 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 658 tgtttgccataaagaaaaaagaca 681
>gb|AY350139.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 554 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350138.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 578 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350137.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 575 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350136.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 579 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350134.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 559 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350132.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 580 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350131.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 582 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350128.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 587 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350127.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 559 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350126.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 587 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350123.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 557 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350122.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 586 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350121.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 557 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350120.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 600 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350118.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 604 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350117.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 605 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350116.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 587 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350115.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 603 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350114.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 587 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350113.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 604 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350112.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 600 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350111.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 603 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350110.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 587 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350109.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 600 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350108.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 562 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350107.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 603 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350106.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 1239 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY350022.1| HIV-1 from USA pol protein (pol) gene, partial cds Length = 605 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY643235.1| HIV-1 isolate BR03SP147 from Brazil reverse transcriptase (pol) gene, partial cds Length = 1005 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AF427269.1| HIV-1 isolate ayi43 from USA pol protein (pol) gene, partial cds Length = 981 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 485 tgtttgccataaagaaaaaagaca 508
>gb|AF427221.1| HIV-1 isolate bra32 from USA pol protein (pol) gene, partial cds Length = 958 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 485 tgtttgccataaagaaaaaagaca 508
>gb|AY535943.1| HIV-1 isolate 31 BIOMRT from France reverse transcriptase (pol) gene, partial cds Length = 713 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 153 tgtttgccataaagaaaaaagaca 176
>gb|AY332305.1| HIV-1 isolate 5iso from Japan reverse transcriptase (pol) gene, partial cds Length = 798 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY362175.1| HIV-1 isolate 119817 from United Kingdom pol protein (pol) gene, partial cds Length = 969 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY362119.1| HIV-1 isolate 102778 from United Kingdom pol protein (pol) gene, partial cds Length = 969 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY362118.1| HIV-1 isolate 112347 from United Kingdom pol protein (pol) gene, partial cds Length = 969 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY362095.1| HIV-1 isolate 112348 from United Kingdom pol protein (pol) gene, partial cds Length = 969 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY362094.1| HIV-1 isolate 111249 from United Kingdom pol protein (pol) gene, partial cds Length = 969 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY626960.1| HIV-1 isolate CAR-70 from Central African Republic pol protein (pol) gene, partial cds Length = 1076 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY316003.1| HIV-1 from Spain isolate 28.00 pol protein (pol) gene, partial cds Length = 1971 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY315944.1| HIV-1 from Spain isolate 02.24 pol protein (pol) gene, partial cds Length = 1971 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY315942.1| HIV-1 from Spain isolate 01.72 pol protein (pol) gene, partial cds Length = 1971 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY371151.1| HIV-1 isolate 02CM.2190SA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds Length = 8384 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 1924 tgtttgccataaagaaaaaagaca 1947
>gb|AY371149.1| HIV-1 isolate 01CM.0186ND from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds Length = 8409 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 1924 tgtttgccataaagaaaaaagaca 1947
>gb|AY444274.1| HIV-1 isolate F-ABB95 from Cameroon pol protein (pol) gene, partial cds Length = 1302 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY444205.1| HIV-1 isolate B-BrRJ041 from Brazil pol protein (pol) gene, partial cds Length = 1302 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY472000.1| HIV-1 isolate 218647 from USA pol protein (pol) gene, partial cds Length = 1022 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 479 tgtttgccataaagaaaaaagaca 502
>gb|AY471998.1| HIV-1 isolate 218601 from USA pol protein (pol) gene, partial cds Length = 1022 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 479 tgtttgccataaagaaaaaagaca 502
>gb|AY471949.1| HIV-1 isolate 214354 from USA pol protein (pol) gene, partial cds Length = 856 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 305 tgtttgccataaagaaaaaagaca 328
>gb|AY471939.1| HIV-1 isolate 214017 from USA pol protein (pol) gene, partial cds Length = 1022 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 479 tgtttgccataaagaaaaaagaca 502
>gb|AY471937.1| HIV-1 isolate 214015 from USA pol protein (pol) gene, partial cds Length = 1022 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 479 tgtttgccataaagaaaaaagaca 502
>gb|AC146059.4| Pan troglodytes BAC clone RP43-14K1 from 7, complete sequence Length = 210466 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 atatttacaagaaagctagcaaac 178 ||||||||||||||||||| |||| Sbjct: 100187 atatttacaagaaagctagaaaac 100164
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 cggtcgccacctgcggctca 376 |||||||||||||||||||| Sbjct: 1516433 cggtcgccacctgcggctca 1516414
>gb|AY260288.1| HIV-1 isolate 103 from France reverse transcriptase (pol) gene, partial cds Length = 539 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 59 tgtttgccataaagaaaaaagaca 82
>gb|AY260186.1| HIV-1 isolate 1 from France reverse transcriptase (pol) gene, partial cds Length = 539 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 59 tgtttgccataaagaaaaaagaca 82
>gb|AY313439.1| HIV-1 isolate con34 from Brazil pol protein (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY313422.1| HIV-1 isolate cs154 from Brazil pol protein (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>emb|AJ249239.1|HIM249239 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96CM-MP535 Length = 8604 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 1924 tgtttgccataaagaaaaaagaca 1947
>emb|AJ249235.1|HIM249235 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 97ZR-EQTB11 Length = 8600 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 1924 tgtttgccataaagaaaaaagaca 1947
>gb|AY334813.1| HIV-1 isolate 54684c.h from Puerto Rico pol protein (pol) gene, partial cds Length = 620 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 68 tgtttgccataaagaaaaaagaca 91
>gb|AY334754.1| HIV-1 isolate 52574.g from Puerto Rico pol protein (pol) gene, partial cds Length = 620 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 68 tgtttgccataaagaaaaaagaca 91
>gb|AY455636.1| HIV-1 isolate patient 85 clone RT3 from USA reverse transcriptase (pol) gene, partial cds Length = 633 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 125 tgtttgccataaagaaaaaagaca 148
>gb|AY569949.1| HIV-1 isolate N53 from Brazil reverse transcriptase (pol) gene, partial cds Length = 580 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 83 tgtttgccataaagaaaaaagaca 106
>gb|AY569946.1| HIV-1 isolate N48 from Brazil reverse transcriptase (pol) gene, partial cds Length = 597 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY569916.1| HIV-1 isolate n15 from Brazil reverse transcriptase (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY569908.1| HIV-1 isolate N07 from Brazil reverse transcriptase (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY566130.1| HIV-1 isolate PCM025 from Colombia pol protein (pol) gene, partial cds Length = 1128 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 562 tgtttgccataaagaaaaaagaca 585
>gb|AY390132.1| HIV-1 isolate 170 from Brazil reverse transcriptase (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY390098.1| HIV-1 isolate 177 from Brazil reverse transcriptase (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY375052.1| HIV-1 isolate CV418 from Italy pol protein (pol) gene, partial cds Length = 1302 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF323213.1| HIV-1 clone 137 from Australia gag protein (gag) and pol protein (pol) genes, partial cds Length = 1278 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 679 tgtttgccataaagaaaaaagaca 702
>gb|AY524176.1| HIV-1 isolate 02USNYU3104 from USA protease (pol) gene, partial cds Length = 1143 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 488 tgtttgccataaagaaaaaagaca 511
>gb|AC092180.5| Homo sapiens BAC clone RP11-1375C19 from 7, complete sequence Length = 85275 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ttacaagaaagctagcaaac 178 |||||||||||||||||||| Sbjct: 324 ttacaagaaagctagcaaac 305
>gb|AY211648.1| HIV-1 isolate AR59302 from Argentina pol protein (pol) gene, partial cds Length = 1269 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY484314.1| HIV-1 isolate 98USP1Ntcp from USA reverse transcriptase (pol) gene, partial cds Length = 574 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 100 tgtttgccataaagaaaaaagaca 123
>gb|AY484307.1| HIV-1 isolate 98USP1Ntcg from USA reverse transcriptase (pol) gene, partial cds Length = 574 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 100 tgtttgccataaagaaaaaagaca 123
>gb|AY392114.1| HIV-1 isolate 01KMK12 from South Korea pol protein (pol) gene, partial cds Length = 1047 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AY484766.1| HIV-1 isolate 25128-18 reverse transcriptase (pol) gene, partial cds Length = 604 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 114 tgtttgccataaagaaaaaagaca 137
>gb|AY453042.2| HIV-1 isolate 3012 from USA reverse transcriptase (pol) gene, partial cds Length = 632 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|AY453026.1| HIV-1 isolate 0010 from USA reverse transcriptase (pol) gene, partial cds Length = 632 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|AY458749.1| HIV-1 isolate BTT30 from USA pol protein (pol) gene, partial cds Length = 997 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 485 tgtttgccataaagaaaaaagaca 508
>gb|AY165262.1| HIV-1 isolate 01SE-21780 from Sweden gag-pol fusion polyprotein gene, partial cds Length = 1726 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 882 tgtttgccataaagaaaaaagaca 905
>gb|AY165256.1| HIV-1 isolate 01SE-21259 from Sweden gag-pol fusion polyprotein gene, partial cds Length = 1727 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 883 tgtttgccataaagaaaaaagaca 906
>gb|AY165203.1| HIV-1 isolate 99SE-16033 from Sweden gag-pol fusion polyprotein gene, partial cds Length = 1726 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 882 tgtttgccataaagaaaaaagaca 905
>gb|M30931.1|SIVAGM3 Simian immunodeficiency virus (SIV) proviral, complete genome Length = 9625 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 |||||| ||||||||||||||||| Sbjct: 2453 tgttttgcataaagaaaaaagaca 2476
>gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, complete sequence Length = 190505 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 acacatatttacaagaaagc 170 |||||||||||||||||||| Sbjct: 44603 acacatatttacaagaaagc 44584
>gb|AC122004.2| Mus musculus BAC clone RP24-337O4 from 18, complete sequence Length = 133247 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ttttccataaagaaaaaaga 244 |||||||||||||||||||| Sbjct: 113665 ttttccataaagaaaaaaga 113684
>ref|XM_649149.1| Entamoeba histolytica HM-1:IMSS deoxycytidyl transferase, putative (59.t00030) partial mRNA Length = 2127 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tattgttttccataaagaaa 239 |||||||||||||||||||| Sbjct: 459 tattgttttccataaagaaa 440
>gb|AY049680.1| HIV-1 isolate G013 from USA reverse transcriptase (pol) gene, partial cds Length = 632 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|AY049630.1| HIV-1 isolate G049 from USA reverse transcriptase (pol) gene, partial cds Length = 632 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|AY049548.1| HIV-1 isolate G091 from USA reverse transcriptase (pol) gene, partial cds Length = 632 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|DQ157805.1| HIV-1 isolate EC.1085998 from Ecuador protease (pol) gene, partial cds Length = 1024 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 607 tgtttgccataaagaaaaaagaca 630
>gb|AC145867.2| Pan troglodytes BAC clone RP43-21B15 from 7, complete sequence Length = 152616 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 atatttacaagaaagctagcaaac 178 ||||||||||||||||||| |||| Sbjct: 105684 atatttacaagaaagctagaaaac 105661
>gb|AY331290.1| HIV-1 isolate 1018-10 from USA, complete genome Length = 8775 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 1940 tgtttgccataaagaaaaaagaca 1963
>gb|AY331289.1| HIV-1 isolate 1018-06 from USA, complete genome Length = 8775 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 1940 tgtttgccataaagaaaaaagaca 1963
>gb|AF541335.1| HIV-1 isolate LUX053RT from Luxembourg reverse transcriptase (pol) gene, partial cds Length = 632 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|DQ452652.1| HIV-1 isolate CM_01_669 from Cameroon pol protein (pol) gene, partial cds Length = 1158 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 562 tgtttgccataaagaaaaaagaca 585
>gb|AC115873.8| Mus musculus, clone RP24-349F22, complete sequence Length = 159466 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ttttccataaagaaaaaaga 244 |||||||||||||||||||| Sbjct: 142430 ttttccataaagaaaaaaga 142411
>gb|AY166480.1| HIV-1 isolate 01KMG12 from South Korea pol protein (Pol) gene, partial cds Length = 750 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY267315.1| HIV-1 clone 126prrt from Saint Vincent and the Grenadines pol protein (pol) gene, partial cds Length = 1061 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 530 tgtttgccataaagaaaaaagaca 553
>gb|AY213546.1| HIV-1 isolate BRC1558POL from Brazil pol protein (pol) gene, partial cds Length = 1044 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 491 tgtttgccataaagaaaaaagaca 514
>gb|AY213343.1| HIV-1 isolate BRNE271RT from Brazil reverse transcriptase (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY213293.1| HIV-1 isolate BRRJ929RT from Brazil reverse transcriptase (pol) gene, partial cds Length = 620 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 97 tgtttgccataaagaaaaaagaca 120
>gb|AY213282.1| HIV-1 isolate BRRJ923RT from Brazil reverse transcriptase (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>gb|AY213258.1| HIV-1 isolate BRRJ909RT from Brazil reverse transcriptase (pol) gene, partial cds Length = 571 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 74 tgtttgccataaagaaaaaagaca 97
>emb|CR536604.6| Zebrafish DNA sequence from clone DKEY-57A22 in linkage group 9, complete sequence Length = 217381 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aaaatgcattgcacagcaaa 61 |||||||||||||||||||| Sbjct: 764 aaaatgcattgcacagcaaa 783
>gb|AY260365.1| HIV-1 isolate 180 from France reverse transcriptase (pol) gene, partial cds Length = 596 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 65 tgtttgccataaagaaaaaagaca 88
>gb|AY260309.1| HIV-1 isolate 124 from France reverse transcriptase (pol) gene, partial cds Length = 596 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 65 tgtttgccataaagaaaaaagaca 88
>gb|DQ130970.1| HIV-1 isolate 14-0049 from Thailand reverse transcriptase (pol) gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 68 tgtttgccataaagaaaaaagaca 91
>gb|AY075843.1| HIV-1 isolate 99USB199o27pct from USA pol polyprotein (pol) gene, partial cds Length = 972 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 460 tgtttgccataaagaaaaaagaca 483
>gb|AY075824.1| HIV-1 isolate 99USB199o27pc3 from USA pol polyprotein (pol) gene, partial cds Length = 997 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 485 tgtttgccataaagaaaaaagaca 508
>gb|AY075794.1| HIV-1 isolate 00USB100913pc6 from USA pol polyprotein (pol) gene, partial cds Length = 1056 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 544 tgtttgccataaagaaaaaagaca 567
>gb|DQ443621.1| HIV-1 isolate 145 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 766 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443613.1| HIV-1 isolate 126 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 730 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443612.1| HIV-1 isolate 125 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 741 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443610.1| HIV-1 isolate 123 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 766 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443606.1| HIV-1 isolate 114 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 767 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443601.1| HIV-1 isolate 104 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 697 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 147 tgtttgccataaagaaaaaagaca 170
>gb|DQ443599.1| HIV-1 isolate 102 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 732 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 146 tgtttgccataaagaaaaaagaca 169
>gb|DQ443593.1| HIV-1 isolate 093 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 695 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443584.1| HIV-1 isolate 077 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 732 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443582.1| HIV-1 isolate 075 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 767 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443580.1| HIV-1 isolate 070 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 717 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 170 tgtttgccataaagaaaaaagaca 193
>gb|DQ443569.1| HIV-1 isolate 046 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 734 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 148 tgtttgccataaagaaaaaagaca 171
>gb|DQ443561.1| HIV-1 isolate 024 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 730 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 144 tgtttgccataaagaaaaaagaca 167
>gb|DQ443559.1| HIV-1 isolate 018 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 727 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ443557.1| HIV-1 isolate 012 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 625 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 144 tgtttgccataaagaaaaaagaca 167
>gb|DQ443555.1| HIV-1 isolate 010 from Central African Republic reverse transcriptase (pol) gene, partial cds Length = 701 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 155 tgtttgccataaagaaaaaagaca 178
>gb|AY999636.1| HIV-1 isolate 5061 from Brazil pol protein (pol) gene, partial cds Length = 860 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 415 tgtttgccataaagaaaaaagaca 438
>gb|AY999588.1| HIV-1 isolate 4372 from Brazil pol protein (pol) gene, partial cds Length = 860 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 415 tgtttgccataaagaaaaaagaca 438
>gb|AY999477.1| HIV-1 isolate 2969 from Brazil pol protein (pol) gene, partial cds Length = 860 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 415 tgtttgccataaagaaaaaagaca 438
>gb|AY999360.1| HIV-1 isolate 1071 from Brazil pol protein (pol) gene, partial cds Length = 860 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 415 tgtttgccataaagaaaaaagaca 438
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ttttccataaagaaaaaaga 244 |||||||||||||||||||| Sbjct: 1318315 ttttccataaagaaaaaaga 1318334
>gb|AY877146.1| HIV-1 isolate BR03SP33 from Brazil reverse transcriptase (pol) gene, partial cds Length = 1005 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|DQ059737.1| HIV-1 isolate TV749 from Canada reverse transcriptase (pol) gene, partial cds Length = 523 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 131 tgtttgccataaagaaaaaagaca 154
>gb|DQ059736.1| HIV-1 isolate TV721 from Canada reverse transcriptase (pol) gene, partial cds Length = 523 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 131 tgtttgccataaagaaaaaagaca 154
>gb|DQ059704.1| HIV-1 isolate TV823 from Canada reverse transcriptase (pol) gene, partial cds Length = 522 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 130 tgtttgccataaagaaaaaagaca 153
>emb|AJ577961.1|HIM577961 Human immunodeficiency virus 1 partial pol gene for pol polyprotein, genomic RNA, isolate 02FR-NAV-727 Length = 1016 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>emb|AJ577923.1|HIM577923 Human immunodeficiency virus 1 partial pol gene for pol polyprotein, genomic RNA, isolate 00FR-LAB-714 Length = 1022 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>emb|AJ577747.1|HIM577747 Human immunodeficiency virus type 1 partial pol gene for pol polyprotein, genomic RNA, isolate 00FR-BRU-715 Length = 1017 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>emb|AJ583709.1| Human immunodeficiency virus 1 partial gag-pol gene for protease-rt, genomic RNA, isolate 99SN-101HALD(26/2/99) Length = 1830 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 704 tgtttgccataaagaaaaaagaca 727
>emb|AJ419486.1|HIM419486 Human immunodeficiency virus type 1 partial polyprotein gene for protease and reverse transcriptase precursor, genomic RNA, patient 274 Length = 1259 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>emb|AJ404325.1|HIM404325 Human immunodeficiency virus type 1 proviral gag gene, pol gene, vif gene, vpr gene, vpu gene, env gene and nef gene Length = 8936 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 1936 tgtttgccataaagaaaaaagaca 1959
>emb|AJ313420.1|HIM313420 Human immunodeficiency virus type 1 partial pol gene, genomic RNA, isolate 00GAB-20N Length = 1797 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 689 tgtttgccataaagaaaaaagaca 712
>emb|AJ313411.1|HIM313411 Human immunodeficiency virus type 1 partial pol gene, genomic RNA, isolate 00GAB-09I Length = 1854 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 711 tgtttgccataaagaaaaaagaca 734
>emb|AJ313390.1|HIM313390 Human immunodeficiency virus type 1 partial pol gene, genomic RNA, isolate 00GAB-LBV02-02 Length = 1824 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 690 tgtttgccataaagaaaaaagaca 713
>emb|AJ291719.1|HIM291719 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129 Length = 9737 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 2722 tgtttgccataaagaaaaaagaca 2745
>emb|AJ287047.1|HIM287047 Human immunodeficiency virus type 1 proviral partial pol gene for POL precursor, isolate 99FR-727DIP Length = 1572 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 486 tgtttgccataaagaaaaaagaca 509
>emb|AJ010413.1|HIM010413 Human immunodeficiency virus type 1 (AJ9305016/AJ-05.93 isolate) reverse transcriptase gene, partial Length = 777 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801051.1| HIV-1 isolate CA20239 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY800849.1| HIV-1 isolate CA7502 from USA reverse transcriptase (pol) gene, partial cds Length = 909 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY800848.1| HIV-1 isolate CA4201 from USA reverse transcriptase (pol) gene, partial cds Length = 909 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802475.1| HIV-1 isolate CA38795 from USA reverse transcriptase (pol) gene, partial cds Length = 897 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802403.1| HIV-1 isolate CA35105 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802602.1| HIV-1 isolate CA10382 from USA reverse transcriptase (pol) gene, partial cds Length = 780 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802588.1| HIV-1 isolate CA10381 from USA reverse transcriptase (pol) gene, partial cds Length = 855 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802229.1| HIV-1 isolate CA24840 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802218.1| HIV-1 isolate CA41359 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802217.1| HIV-1 isolate CA34403 from USA reverse transcriptase (pol) gene, partial cds Length = 903 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802216.1| HIV-1 isolate CA24658 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802215.1| HIV-1 isolate CA34259 from USA reverse transcriptase (pol) gene, partial cds Length = 906 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802150.1| HIV-1 isolate CA24284 from USA reverse transcriptase (pol) gene, partial cds Length = 903 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY802099.1| HIV-1 isolate CA23926 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801662.1| HIV-1 isolate CA35130 from USA reverse transcriptase (pol) gene, partial cds Length = 885 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801492.1| HIV-1 isolate CA34868 from USA reverse transcriptase (pol) gene, partial cds Length = 897 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801938.1| HIV-1 isolate CA20205 from USA reverse transcriptase (pol) gene, partial cds Length = 906 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801880.1| HIV-1 isolate CA48200 from USA reverse transcriptase (pol) gene, partial cds Length = 906 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801879.1| HIV-1 isolate CA20070 from USA reverse transcriptase (pol) gene, partial cds Length = 858 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801863.1| HIV-1 isolate CA37709 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801402.1| HIV-1 isolate CA42648 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801395.1| HIV-1 isolate CA48254 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801393.1| HIV-1 isolate CA21148 from USA reverse transcriptase (pol) gene, partial cds Length = 900 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY801284.1| HIV-1 isolate CA34392 from USA reverse transcriptase (pol) gene, partial cds Length = 903 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY800802.1| HIV-1 isolate CA24672 from USA reverse transcriptase (pol) gene, partial cds Length = 903 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AY800801.1| HIV-1 isolate CA3918 from USA reverse transcriptase (pol) gene, partial cds Length = 855 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 179 tgtttgccataaagaaaaaagaca 202
>gb|AF459211.1| HIV-1 isolate patient AD-124 from USA pol protein (pol) gene, partial cds Length = 965 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF459164.1| HIV-1 isolate patient AD-69 from USA pol protein (pol) gene, partial cds Length = 965 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF459148.1| HIV-1 isolate patient AD-52 from USA pol protein (pol) gene, partial cds Length = 963 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF509284.1| HIV-1 isolate 022_10010 from France reverse transcriptase (pol) gene, partial cds Length = 612 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 59 tgtttgccataaagaaaaaagaca 82
>gb|AY083249.1| HIV-1 isolate LP2 reverse transcriptase (pol) gene, partial cds Length = 597 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 83 tgtttgccataaagaaaaaagaca 106
>gb|AF517068.1| HIV-1 isolate 296-6 from Spain retrotranscriptase (pol) gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|AF517067.1| HIV-1 isolate 296-1 from Spain retrotranscriptase (pol) gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 70 tgtttgccataaagaaaaaagaca 93
>gb|AF517486.1| HIV-1 from Italy patient 27, off-therapy group, pre-treatment sample pol polyprotein (pol) gene, partial cds Length = 987 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, complete sequence Length = 153310 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ttgttttccataaagaaaaa 241 |||||||||||||||||||| Sbjct: 29991 ttgttttccataaagaaaaa 29972
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 505 gctgctggacagcagtgcctgcacctcg 532 ||||| || ||||||||||||||||||| Sbjct: 88899 gctgccgggcagcagtgcctgcacctcg 88926
>gb|AF347602.1| HIV-1 isolate 997524 from Germany pol protein (pol) gene, partial cds Length = 944 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 446 tgtttgccataaagaaaaaagaca 469
>gb|AF347594.1| HIV-1 isolate 997149 from Germany pol protein (pol) gene, partial cds Length = 979 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF347526.1| HIV-1 isolate 995228 from Germany pol protein (pol) gene, partial cds Length = 953 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 446 tgtttgccataaagaaaaaagaca 469
>gb|AF347421.1| HIV-1 isolate 987307 from Germany pol protein (pol) gene, partial cds Length = 1017 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 455 tgtttgccataaagaaaaaagaca 478
>gb|AF347326.1| HIV-1 isolate 981308 from Germany pol protein (pol) gene, partial cds Length = 1174 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|DQ409550.1| HIV-1 isolate 2130495 from Australia reverse transcriptase (pol) gene, partial cds Length = 628 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 121 tgtttgccataaagaaaaaagaca 144
>gb|DQ409507.1| HIV-1 isolate 9070882 from Australia reverse transcriptase (pol) gene, partial cds Length = 639 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 122 tgtttgccataaagaaaaaagaca 145
>gb|DQ409477.1| HIV-1 isolate 8470935 from Australia reverse transcriptase (pol) gene, partial cds Length = 629 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 122 tgtttgccataaagaaaaaagaca 145
>gb|DQ409356.1| HIV-1 isolate 7974623 from Australia reverse transcriptase (pol) gene, partial cds Length = 629 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 122 tgtttgccataaagaaaaaagaca 145
>dbj|AK075373.1| Homo sapiens cDNA PSEC0061 fis, clone NT2RP2000720, highly similar to Asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase) Length = 1931 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agcttccacagcaagtacat 37 |||||||||||||||||||| Sbjct: 384 agcttccacagcaagtacat 365
>gb|AF199306.1| HIV-1 patient KNA from France reverse transcriptase (pol) gene, partial cds Length = 540 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 59 tgtttgccataaagaaaaaagaca 82
>gb|AF199305.1| HIV-1 patient KNA from France reverse transcriptase (pol) gene, partial cds Length = 540 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 59 tgtttgccataaagaaaaaagaca 82
>gb|AF357793.1| HIV1 isolate 690404g060898 from USA pol protein (pol) gene, partial cds Length = 1261 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF357763.1| HIV1 isolate 501469I042198 from USA pol protein (pol) gene, partial cds Length = 1269 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF357696.1| HIV1 isolate 503519j071598 from USA pol protein (pol) gene, partial cds Length = 1261 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF357666.1| HIV1 isolate 501469I123097 from USA pol protein (pol) gene, partial cds Length = 1269 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AF357627.1| HIV1 isolate 400192l060998 from USA pol protein (pol) gene, partial cds Length = 1269 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AC020782.12| Homo sapiens chromosome 8, clone RP11-562L3, complete sequence Length = 104745 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ttgttttccataaagaaaaa 241 |||||||||||||||||||| Sbjct: 25238 ttgttttccataaagaaaaa 25257
>gb|AF395385.1| HIV-1 isolate 48 from USA pol polyprotein (pol) gene, partial cds Length = 1049 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499
>gb|AC015711.11| Homo sapiens, clone RP11-47G3, complete sequence Length = 172676 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 ttgctcacttcccagagccc 588 |||||||||||||||||||| Sbjct: 90017 ttgctcacttcccagagccc 90036
>gb|AF455654.1| HIV-1 isolate 24316 subtype K from Spain reverse transcriptase (pol) gene, partial cds Length = 521 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 127 tgtttgccataaagaaaaaagaca 150
>gb|DQ345204.1| HIV-1 isolate 3387-1311B from Italy pol protein (pol) gene, partial cds Length = 1302 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tgttttccataaagaaaaaagaca 246 ||||| |||||||||||||||||| Sbjct: 476 tgtttgccataaagaaaaaagaca 499 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,633,032 Number of Sequences: 3902068 Number of extensions: 5633032 Number of successful extensions: 139614 Number of sequences better than 10.0: 660 Number of HSP's better than 10.0 without gapping: 660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138706 Number of HSP's gapped (non-prelim): 908 length of query: 661 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 638 effective length of database: 17,143,297,704 effective search space: 10937423935152 effective search space used: 10937423935152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
