ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11i02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z66513.2|CEF54D5 Caenorhabditis elegans Cosmid F54D5, complete sequence Length = 39112 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 549 aaataattatgttttccataaaa 571 ||||||||||||||||||||||| Sbjct: 34683 aaataattatgttttccataaaa 34661
>gb|AC143340.4| Medicago truncatula clone mth2-7f4, complete sequence Length = 114535 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 568 aaaattatataggaatatgaattttct 594 |||| |||||||||||||||||||||| Sbjct: 67637 aaaaatatataggaatatgaattttct 67611
>gb|AC137836.25| Medicago truncatula clone mth2-10f14, complete sequence Length = 140197 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 568 aaaattatataggaatatgaattttct 594 |||| |||||||||||||||||||||| Sbjct: 4343 aaaaatatataggaatatgaattttct 4317
>gb|AC139290.15| Medicago truncatula clone mth2-23f4, complete sequence Length = 127701 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 568 aaaattatataggaatatgaattttct 594 |||| |||||||||||||||||||||| Sbjct: 33156 aaaaatatataggaatatgaattttct 33130
>gb|AC104873.7| Mus musculus chromosome 1, clone RP23-434G18, complete sequence Length = 205266 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 575 tataggaatatgaattttctta 596 |||||||||||||||||||||| Sbjct: 87778 tataggaatatgaattttctta 87757
>gb|AC164957.2| Mus musculus BAC clone RP23-480L9 from chromosome 17, complete sequence Length = 183439 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 17 tataaaaatgcaccataaaggacagt 42 ||||||||| |||||||||||||||| Sbjct: 35230 tataaaaatacaccataaaggacagt 35255
>emb|CR848661.5| Zebrafish DNA sequence from clone CH211-187B9 in linkage group 15, complete sequence Length = 149649 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 331 gttagaatatgcactatagtagagtt 356 ||||||||||||||||| |||||||| Sbjct: 67507 gttagaatatgcactattgtagagtt 67532
>gb|AC163609.4| Mus musculus chromosome 1, clone RP24-128P11, complete sequence Length = 164997 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 575 tataggaatatgaattttctta 596 |||||||||||||||||||||| Sbjct: 146993 tataggaatatgaattttctta 146972
>gb|AC163689.3| Mus musculus BAC clone CH36-200G6 from chromosome 13, complete sequence Length = 188084 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 606 atagagaaatcaaacaagatt 626 ||||||||||||||||||||| Sbjct: 25727 atagagaaatcaaacaagatt 25747
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 tgaaaaattatactaatataa 403 ||||||||||||||||||||| Sbjct: 163183 tgaaaaattatactaatataa 163163
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 taaattcatttgaatttagtt 425 ||||||||||||||||||||| Sbjct: 1314755 taaattcatttgaatttagtt 1314735
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 539 ttcaaattttaaataattatgtttt 563 |||||||||| |||||||||||||| Sbjct: 108921 ttcaaatttttaataattatgtttt 108897
>ref|XM_894982.2| PREDICTED: Mus musculus similar to zinc finger protein 709, transcript variant 1 (LOC626802), mRNA Length = 3112 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 1515 gggatacaaggcatgtttctt 1535
>ref|XM_001004338.1| PREDICTED: Mus musculus similar to gonadotropin inducible ovarian transcription factor 1, transcript variant 4 (LOC668066), mRNA Length = 3111 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 1514 gggatacaaggcatgtttctt 1534
>gb|BC098094.1| Mus musculus similar to zinc finger protein 97, mRNA (cDNA clone MGC:106630 IMAGE:30362243), complete cds Length = 3733 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 2122 gggatacaaggcatgtttctt 2142
>gb|BC092145.1| Mus musculus similar to zinc finger protein 709, mRNA (cDNA clone IMAGE:30106568) Length = 3148 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 1517 gggatacaaggcatgtttctt 1537
>emb|AL354830.8| Human DNA sequence from clone RP11-193G17 on chromosome 13 Contains the gene for a novel protein similar to prothymosin, complete sequence Length = 152555 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 558 tgttttccataaaattatata 578 ||||||||||||||||||||| Sbjct: 16402 tgttttccataaaattatata 16422
>emb|AL157837.10| Human DNA sequence from clone RP11-467I21 on chromosome 1q31.1-31.3 Contains a ribosomal protein L23a (RPL23A) pseudogene, complete sequence Length = 139485 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 tgaattcaaattttaaataat 555 ||||||||||||||||||||| Sbjct: 90108 tgaattcaaattttaaataat 90128
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 539 ttcaaattttaaataattatgtttt 563 |||||||||| |||||||||||||| Sbjct: 112123 ttcaaatttttaataattatgtttt 112099
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 539 ttcaaattttaaataattatgtttt 563 |||||||||| |||||||||||||| Sbjct: 116744 ttcaaatttttaataattatgtttt 116720
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 aattcaaattttaaataatta 557 ||||||||||||||||||||| Sbjct: 354308 aattcaaattttaaataatta 354328
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 atataagtaaattcatttgaa 418 ||||||||||||||||||||| Sbjct: 1087922 atataagtaaattcatttgaa 1087942
>emb|AJ517314.2|CIN517314 Ciona intestinalis complete mitochondrial genome Length = 14790 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 540 tcaaattttaaataattatgttttc 564 ||||||||||||||||| ||||||| Sbjct: 13556 tcaaattttaaataattttgttttc 13580
>gb|AC154550.2| Mus musculus BAC clone RP23-444H18 from chromosome 13, complete sequence Length = 190647 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 606 atagagaaatcaaacaagatt 626 ||||||||||||||||||||| Sbjct: 86628 atagagaaatcaaacaagatt 86608
>emb|BX548256.7| Zebrafish DNA sequence from clone DKEYP-75B4 in linkage group 1, complete sequence Length = 181272 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 tttctttagttgaaaaattat 393 ||||||||||||||||||||| Sbjct: 76694 tttctttagttgaaaaattat 76674
>ref|NM_001024825.1| Mus musculus similar to zinc finger protein 97 (LOC433520), mRNA Length = 3733 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 2122 gggatacaaggcatgtttctt 2142
>gb|AC084877.18| Homo sapiens 12 BAC RP11-158O11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179212 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 383 tgaaaaattatactaatataagtaa 407 |||||||||||||||||| |||||| Sbjct: 41742 tgaaaaattatactaatacaagtaa 41718
>gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence Length = 170283 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 ataagtaaattcatttgaatt 420 ||||||||||||||||||||| Sbjct: 126889 ataagtaaattcatttgaatt 126909
>gb|BC025828.1| Mus musculus similar to zinc finger protein 97, mRNA (cDNA clone IMAGE:5102112), partial cds Length = 1994 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 1871 gggatacaaggcatgtttctt 1891
>emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced protein Length = 2897 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 404 gtaaattcatttgaatttagtttag 428 ||||||||| ||||||||||||||| Sbjct: 2843 gtaaattcaattgaatttagtttag 2819
>emb|AL928707.5| Zebrafish DNA sequence from clone CH211-207M2 in linkage group 21, complete sequence Length = 206304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 aattcatttgaatttagttta 427 ||||||||||||||||||||| Sbjct: 117135 aattcatttgaatttagttta 117115
>emb|AL935320.10| Mouse DNA sequence from clone RP23-275N21 on chromosome 2, complete sequence Length = 161265 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 8288 gggatacaaggcatgtttctt 8308
>emb|BX294394.4| Mouse DNA sequence from clone RP24-63F2 on chromosome 2, complete sequence Length = 138334 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 34969 gggatacaaggcatgtttctt 34989
>emb|AL845494.3| Mouse DNA sequence from clone RP23-330D3 on chromosome 2, complete sequence Length = 216517 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 59143 gggatacaaggcatgtttctt 59123
>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete sequence Length = 217609 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 91835 gggatacaaggcatgtttctt 91855
>emb|AL844160.4| Mouse DNA sequence from clone RP23-340N6 on chromosome 4, complete sequence Length = 207022 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 382 ttgaaaaattatactaatataagta 406 |||||||||||||| |||||||||| Sbjct: 7483 ttgaaaaattatacaaatataagta 7507
>emb|AL731783.10| Mouse DNA sequence from clone RP23-124E18 on chromosome 2, complete sequence Length = 207209 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gggatacaaggcatgtttctt 378 ||||||||||||||||||||| Sbjct: 30296 gggatacaaggcatgtttctt 30276
>gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, complete sequence Length = 216754 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 aatatgaattttcttatgta 600 |||||||||||||||||||| Sbjct: 103555 aatatgaattttcttatgta 103536
>ref|XM_630212.1| Dictyostelium discoideum hypothetical protein (DDB0219680), partial mRNA Length = 7629 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 agtaaattcatttgaattta 422 |||||||||||||||||||| Sbjct: 6201 agtaaattcatttgaattta 6182
>ref|XM_630211.1| Dictyostelium discoideum hypothetical protein (DDB0191589), partial mRNA Length = 7659 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 agtaaattcatttgaattta 422 |||||||||||||||||||| Sbjct: 6213 agtaaattcatttgaattta 6194
>gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, complete sequence Length = 151556 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 aatatgaattttcttatgta 600 |||||||||||||||||||| Sbjct: 81263 aatatgaattttcttatgta 81244
>gb|AC110224.7| Mus musculus chromosome 18, clone RP24-286H12, complete sequence Length = 167379 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 aaataattatgttttccata 568 |||||||||||||||||||| Sbjct: 21137 aaataattatgttttccata 21156
>gb|AC134546.4| Mus musculus BAC clone RP24-471H17 from chromosome 18, complete sequence Length = 208921 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 catagagaaatcaaacaaga 624 |||||||||||||||||||| Sbjct: 32058 catagagaaatcaaacaaga 32039
>gb|AC119166.16| Mus musculus chromosome 1, clone RP24-393L8, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 tgaattcaaattttaaataa 554 |||||||||||||||||||| Sbjct: 62851 tgaattcaaattttaaataa 62870
>gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, complete sequence Length = 195771 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 taaaattcacattgtatatg 524 |||||||||||||||||||| Sbjct: 162584 taaaattcacattgtatatg 162565
>gb|AC159321.3| Mus musculus BAC clone RP23-18G14 from chromosome 6, complete sequence Length = 202584 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 544 attttaaataattatgttttccat 567 |||| ||||||||||||||||||| Sbjct: 72025 atttgaaataattatgttttccat 72048
>gb|AC132279.4| Mus musculus BAC clone RP24-346M3 from chromosome 6, complete sequence Length = 173744 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 544 attttaaataattatgttttccat 567 |||| ||||||||||||||||||| Sbjct: 35854 atttgaaataattatgttttccat 35831
>gb|AC103934.10| Mus musculus chromosome 6, clone RP23-287O14, complete sequence Length = 208817 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 544 attttaaataattatgttttccat 567 |||| ||||||||||||||||||| Sbjct: 45940 atttgaaataattatgttttccat 45963
>gb|AC147056.3| Pan troglodytes BAC clone RP43-153F5 from 7, complete sequence Length = 167738 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 tccctaaataaaattcacat 516 |||||||||||||||||||| Sbjct: 11043 tccctaaataaaattcacat 11024
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence Length = 209579 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 aaataattatgttttccata 568 |||||||||||||||||||| Sbjct: 15326 aaataattatgttttccata 15307
>gb|AC132116.3| Mus musculus BAC clone RP24-158K7 from chromosome 2, complete sequence Length = 165307 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 aggcatgtttctttagttga 385 |||||||||||||||||||| Sbjct: 117339 aggcatgtttctttagttga 117358
>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence Length = 195587 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 573 tatataggaatatgaatttt 592 |||||||||||||||||||| Sbjct: 83490 tatataggaatatgaatttt 83509
>gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome 3, complete sequence Length = 243378 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 catgtttctttagttgaaaa 388 |||||||||||||||||||| Sbjct: 36021 catgtttctttagttgaaaa 36002
>gb|AC124741.5| Mus musculus BAC clone RP23-357D17 from chromosome 3, complete sequence Length = 220887 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 catgtttctttagttgaaaa 388 |||||||||||||||||||| Sbjct: 21617 catgtttctttagttgaaaa 21636
>gb|AC005521.1| Homo sapiens PAC clone RP5-1106E3 from 7, complete sequence Length = 136495 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 tccctaaataaaattcacat 516 |||||||||||||||||||| Sbjct: 87526 tccctaaataaaattcacat 87545
>ref|XM_669654.1| Plasmodium berghei strain ANKA hypothetical protein (PB000542.00.0) partial mRNA Length = 1734 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tttctttagttgaaaaatta 392 |||||||||||||||||||| Sbjct: 724 tttctttagttgaaaaatta 705
>emb|AJ920323.1| Histomonas meleagridis partial 18S rRNA gene, strain TC6 Length = 1580 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 ataaaattatataggaatat 585 |||||||||||||||||||| Sbjct: 397 ataaaattatataggaatat 416
>gb|AF289005.1| Sartrithrips vesper cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 545 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 taaattcatttgaatttagtttag 428 ||||||||||| |||||||||||| Sbjct: 503 taaattcatttaaatttagtttag 480
>gb|AC182019.3| Felis catus clone RP86-75P21, complete sequence Length = 58123 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 attttaaataattatgtttt 563 |||||||||||||||||||| Sbjct: 13573 attttaaataattatgtttt 13554
>emb|AL671966.1| Human DNA sequence from clone RP11-544L8 on chromosome 6 Contains part of a putative novel gene, complete sequence Length = 61913 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 57290 aaattttaaataattatgtt 57309
>gb|AC116447.10| Homo sapiens chromosome 18, clone RP11-54G14, complete sequence Length = 105108 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 aggtgactcttgaatttttcagct 241 |||||| ||||||||||||||||| Sbjct: 15458 aggtgaatcttgaatttttcagct 15481
>emb|AL121965.19|HSJ161I14 Human DNA sequence from clone RP1-161I14 on chromosome 6q16.1-16.3 Contains part of the RNAH gene for an RNA helicase, complete sequence Length = 113022 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tttctttagttgaaaaatta 392 |||||||||||||||||||| Sbjct: 19801 tttctttagttgaaaaatta 19820
>gb|AC007998.10| Homo sapiens chromosome 18, clone RP11-322E11, complete sequence Length = 207799 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 aggtgactcttgaatttttcagct 241 |||||| ||||||||||||||||| Sbjct: 3766 aggtgaatcttgaatttttcagct 3743
>emb|CR293506.10| Zebrafish DNA sequence from clone CH211-144M15 in linkage group 1, complete sequence Length = 70042 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 21686 aaattttaaataattatgtt 21705
>gb|AC116904.7| Homo sapiens chromosome 18, clone RP11-1112M8, complete sequence Length = 164394 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 ttcaaattttaaataattat 558 |||||||||||||||||||| Sbjct: 25126 ttcaaattttaaataattat 25107
>emb|AL590134.7| Zebrafish DNA sequence from clone RP71-10G3 in linkage group 9 Contains DIRS-1 Danio rerio 1 (DIRSDR1), a putative novel non-LTR transposon similar to Dictyolstelium DIRS-1 and a CpG island, complete sequence Length = 104276 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gttcaaaagaattgtgctgt 475 |||||||||||||||||||| Sbjct: 65585 gttcaaaagaattgtgctgt 65566
>gb|AC158755.6| Mus musculus chromosome 1, clone RP23-461O16, complete sequence Length = 224116 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 agaggtgactcttgaatttttcag 239 |||| ||||||||||||||||||| Sbjct: 153842 agagatgactcttgaatttttcag 153819
>gb|AC010653.10| Homo sapiens chromosome 16 clone RP11-417N10, complete sequence Length = 184515 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 79109 aaattttaaataattatgtt 79128
>gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9, complete sequence Length = 45868 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tataattaatgttagaatat 340 |||||||||||||||||||| Sbjct: 1377 tataattaatgttagaatat 1358
>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence Length = 122319 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 102189 aaattttaaataattatgtt 102208
>gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, complete sequence Length = 185904 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 39870 aaattttaaataattatgtt 39889
>gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome 14, complete sequence Length = 197373 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 taaaattcacattgtatatg 524 |||||||||||||||||||| Sbjct: 161907 taaaattcacattgtatatg 161926
>gb|AF293056.1|AF293056 Histomonas meleagridis small subunit ribosomal RNA gene, partial sequence Length = 1602 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 ataaaattatataggaatat 585 |||||||||||||||||||| Sbjct: 422 ataaaattatataggaatat 441
>gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197909 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 551 ataattatgttttccataaaatta 574 |||||||||||||||| ||||||| Sbjct: 179783 ataattatgttttccacaaaatta 179760
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 2536990 aaattttaaataattatgtt 2537009
>gb|AC022035.5|AC022035 Homo sapiens chromosome 18, clone RP11-106E15, complete sequence Length = 175424 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 taaataaaattcacattgta 520 |||||||||||||||||||| Sbjct: 37588 taaataaaattcacattgta 37569
>gb|AC096721.2| Homo sapiens BAC clone RP11-19C24 from 4, complete sequence Length = 161824 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 567 taaaattatataggaatatgaatt 590 |||||||||||| ||||||||||| Sbjct: 155421 taaaattatataagaatatgaatt 155398
>gb|AC101862.13| Mus musculus chromosome 1, clone RP23-318D9, complete sequence Length = 155322 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 agaggtgactcttgaatttttcag 239 |||| ||||||||||||||||||| Sbjct: 18201 agagatgactcttgaatttttcag 18178
>gb|AC087091.2| Homo sapiens chromosome 3 clone RP11-605M1 map 3p, complete sequence Length = 153013 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 tgtatatgggcatgcatgtg 536 |||||||||||||||||||| Sbjct: 117314 tgtatatgggcatgcatgtg 117333
>gb|AC007681.3| Homo sapiens BAC clone RP11-355F16 from 2, complete sequence Length = 147903 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 tgtgaattcaaattttaaat 552 |||||||||||||||||||| Sbjct: 49836 tgtgaattcaaattttaaat 49855
>gb|AC073539.3|AC073539 Homo sapiens chromosome 19 clone RP11-157B13, complete sequence Length = 184213 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gaaaaattatactaatataa 403 |||||||||||||||||||| Sbjct: 171250 gaaaaattatactaatataa 171269
>gb|AC011482.4|AC011482 Homo sapiens chromosome 19 clone CTB-135N1, complete sequence Length = 129108 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gaaaaattatactaatataa 403 |||||||||||||||||||| Sbjct: 30899 gaaaaattatactaatataa 30918
>gb|AC093451.25| Mus musculus strain C57BL/6J chromosome 8 clone rp23-340n2, complete sequence Length = 198760 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 ttttcttatgtacttacata 608 |||||||||||||||||||| Sbjct: 31186 ttttcttatgtacttacata 31167
>gb|AC011609.9|AC011609 Homo sapiens 3 BAC RP11-114K9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184680 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 tgtatatgggcatgcatgtg 536 |||||||||||||||||||| Sbjct: 105417 tgtatatgggcatgcatgtg 105436
>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V, complete sequence Length = 114056 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 ttcaaattttaaataattat 558 |||||||||||||||||||| Sbjct: 64289 ttcaaattttaaataattat 64270
>emb|BX323595.8| Zebrafish DNA sequence from clone CH211-155O21 in linkage group 20, complete sequence Length = 194459 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 97691 aaattttaaataattatgtt 97672
>gb|AC055754.21| Homo sapiens 3 BAC RP11-4I2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157354 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 585 tgaattttcttatgtacttacata 608 |||||||||||||||| ||||||| Sbjct: 33024 tgaattttcttatgtatttacata 33047
>emb|BX279523.5| Zebrafish DNA sequence from clone CH211-63O20 in linkage group 20, complete sequence Length = 165073 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 aattcaaattttaaataatt 556 |||||||||||||||||||| Sbjct: 123225 aattcaaattttaaataatt 123244
>emb|BX572080.18| Zebrafish DNA sequence from clone DKEY-22N17 in linkage group 13, complete sequence Length = 224120 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 120796 aaattttaaataattatgtt 120815
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 cctaaataaaattcacattg 518 |||||||||||||||||||| Sbjct: 593970 cctaaataaaattcacattg 593951
>dbj|AP001995.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-264E20, complete sequence Length = 96071 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 aagtaaattcatttgaattt 421 |||||||||||||||||||| Sbjct: 66045 aagtaaattcatttgaattt 66064
>emb|BX927409.14| Zebrafish DNA sequence from clone DKEY-89L19 in linkage group 17, complete sequence Length = 154287 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 152119 aaattttaaataattatgtt 152138
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aaattttaaataattatgtt 561 |||||||||||||||||||| Sbjct: 2536941 aaattttaaataattatgtt 2536960
>emb|AL450023.21| Human DNA sequence from clone RP11-552J9 on chromosome X Contains a GAGE family member pseudogene, a novel SSX family protein, two SSX family pseudogenes, the SSX7 gene for X breakpoint 7 synovial sarcoma, the SSX2 gene for X breakpoint 2 synovial sarcoma, the SSX8 gene for X breakpoint 8 synovial sarcoma, three pseudogenes similar to part of ornithine aminotransferase (gyrate atrophy) (OAT), three ornithine aminotransferase (gyrate atrophy) (OAT) pseudogenes, a S100 calcium binding protein A11 (calgizzarin) (S100A11) pseudogene and the 5' end of the gene for a novel protein similar to the SSX family, complete sequence Length = 185532 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tgttttccataaaattatat 577 |||||||||||||||||||| Sbjct: 14570 tgttttccataaaattatat 14589
>gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, complete sequence Length = 187465 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 551 ataattatgttttccataaaatta 574 |||||||||||||||| ||||||| Sbjct: 89341 ataattatgttttccacaaaatta 89364
>gb|AC154304.1| Mus musculus BAC clone RP24-491H15 from 16, complete sequence Length = 169500 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 aattttaaataattatgttt 562 |||||||||||||||||||| Sbjct: 117312 aattttaaataattatgttt 117293
>gb|AC140276.3| Mus musculus BAC clone RP23-336J13 from 8, complete sequence Length = 211518 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 ttttcttatgtacttacata 608 |||||||||||||||||||| Sbjct: 117004 ttttcttatgtacttacata 116985
>gb|AF016052.1|AF016052 Homo sapiens zinc finger protein ZNF191 (ZNF191) gene, complete cds Length = 9700 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 aggtgactcttgaatttttcagct 241 |||||| ||||||||||||||||| Sbjct: 3941 aggtgaatcttgaatttttcagct 3964
>gb|AY285449.1| Sus scrofa clone UMNp692.gcg microsatellite sequence Length = 631 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 attttaaataattatgtttt 563 |||||||||||||||||||| Sbjct: 616 attttaaataattatgtttt 597
>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete sequence Length = 148202 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 556 tatgttttccataaaattat 575 |||||||||||||||||||| Sbjct: 13106 tatgttttccataaaattat 13125
>gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequence Length = 139897 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 ttttcttatgtacttacata 608 |||||||||||||||||||| Sbjct: 21020 ttttcttatgtacttacata 21001
>emb|AL672038.7| Mouse DNA sequence from clone RP23-317H19 on chromosome X, complete sequence Length = 181127 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 tgtatatgggcatgcatgtg 536 |||||||||||||||||||| Sbjct: 137001 tgtatatgggcatgcatgtg 137020
>emb|AL772214.3| Mouse DNA sequence from clone RP23-370C18 on chromosome 2, complete sequence Length = 181349 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 aggcatgtttctttagttga 385 |||||||||||||||||||| Sbjct: 92759 aggcatgtttctttagttga 92740
>emb|AL671918.5| Mouse DNA sequence from clone RP23-172E13 on chromosome X, complete sequence Length = 121205 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 tgttcaaaagaattgtgctg 474 |||||||||||||||||||| Sbjct: 18060 tgttcaaaagaattgtgctg 18079 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,176,479 Number of Sequences: 3902068 Number of extensions: 8176479 Number of successful extensions: 182398 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 181759 Number of HSP's gapped (non-prelim): 639 length of query: 626 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 603 effective length of database: 17,143,297,704 effective search space: 10337408515512 effective search space used: 10337408515512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
