ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11h16 |
|---|---|
| Clone Library Name | barley_pub |
>ASNS_ASPOF (P31752) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (AS) Length = 589 Score = 130 bits (328), Expect = 6e-31 Identities = 66/100 (66%), Positives = 75/100 (75%), Gaps = 6/100 (6%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YRMIFERFFPQNSA TVPGGPS+ACSTAKA+EWDARWS NLDPSGRAALGVH Sbjct: 491 TKEAYYYRMIFERFFPQNSARFTVPGGPSIACSTAKAIEWDARWSNNLDPSGRAALGVHD 550 Query: 131 XAYEQEHLPATIXAG------XSXXPXMIKXAAPGVAIES 30 AY+ LP++I AG + P ++ A PGV I + Sbjct: 551 SAYDPP-LPSSISAGKGAAMITNKKPRIVDVATPGVVIST 589
>ASNS1_PEA (P19251) Asparagine synthetase, nodule [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 585 Score = 124 bits (312), Expect = 5e-29 Identities = 63/94 (67%), Positives = 69/94 (73%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YRMIFERFFPQNSA LTVPGGPSVACST KA+EWDA WS NLDPSGRAALGVH+ Sbjct: 492 TKEAYYYRMIFERFFPQNSARLTVPGGPSVACSTEKAIEWDASWSNNLDPSGRAALGVHV 551 Query: 131 XAYEQEHLPATIXAGXSXXPXMIKXAAPGVAIES 30 AYE + P T I + GVAI++ Sbjct: 552 SAYEHQINPVTKGVEPEKIIPKIGVSPLGVAIQT 585
>ASNS1_LOTJA (P49092) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) Length = 585 Score = 122 bits (305), Expect = 3e-28 Identities = 57/66 (86%), Positives = 60/66 (90%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YRMIFERFFPQNSA LTVPGGP+VACSTAKAVEWDA WS NLDPSGRAALGVHL Sbjct: 491 TKEAYYYRMIFERFFPQNSARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGRAALGVHL 550 Query: 131 XAYEQE 114 AY+ + Sbjct: 551 SAYDDK 556
>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 583 Score = 120 bits (300), Expect = 1e-27 Identities = 56/72 (77%), Positives = 63/72 (87%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YRMIFERFFPQNSA LTVPGG +VACSTAKAVEWDA WS N+DPSGRAA+GVHL Sbjct: 491 TKEAYYYRMIFERFFPQNSARLTVPGGATVACSTAKAVEWDASWSNNMDPSGRAAIGVHL 550 Query: 131 XAYEQEHLPATI 96 AY+ +++ TI Sbjct: 551 SAYDGKNVALTI 562
>ASNS2_PEA (P19252) Asparagine synthetase, root [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 582 Score = 120 bits (300), Expect = 1e-27 Identities = 57/67 (85%), Positives = 59/67 (88%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YRMIFERFFPQNSA LTVPGGP+VACSTAKAVEWDA WS NLDPSGRAALGVH Sbjct: 491 TKEAYYYRMIFERFFPQNSARLTVPGGPTVACSTAKAVEWDAAWSNNLDPSGRAALGVHD 550 Query: 131 XAYEQEH 111 AYE + Sbjct: 551 SAYENHN 557
>ASNS_BRAOL (P49091) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 117 bits (292), Expect = 1e-26 Identities = 54/64 (84%), Positives = 58/64 (90%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YRMIFERFFPQNSA LTVPGG +VACSTAKAVEWDA WS N+DPSGRAA+GVHL Sbjct: 492 TKEAYYYRMIFERFFPQNSARLTVPGGATVACSTAKAVEWDASWSNNMDPSGRAAIGVHL 551 Query: 131 XAYE 120 AY+ Sbjct: 552 SAYD 555
>ASNS_ORYSA (Q43011) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 590 Score = 115 bits (287), Expect = 4e-26 Identities = 61/100 (61%), Positives = 69/100 (69%), Gaps = 8/100 (8%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YR IFE+FFP+N+A LTVPGGPSVACSTAKAVEWDA WS NLDPSGRAALGVH Sbjct: 491 TKEAYYYRTIFEKFFPKNAARLTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHD 550 Query: 131 XAYEQ--EHLPATIXA------GXSXXPXMIKXAAPGVAI 36 AYE + PA+ G + M+K A A+ Sbjct: 551 AAYEDTLQKSPASANPVLDNGFGPALGESMVKTVASATAV 590
>ASNS_TRIVS (O24661) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 113 bits (282), Expect = 1e-25 Identities = 56/69 (81%), Positives = 57/69 (82%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKE Y YRMIFERFFPQNSA LTVPGGPSVACSTA AV WDA WS NLDPSGRAA GVH Sbjct: 491 TKEGYYYRMIFERFFPQNSAKLTVPGGPSVACSTATAVAWDASWSKNLDPSGRAATGVHD 550 Query: 131 XAYEQEHLP 105 AYE H+P Sbjct: 551 LAYE-NHVP 558
>ASNS2_LOTJA (P49093) Asparagine synthetase [glutamine-hydrolyzing] 2 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Length = 585 Score = 113 bits (282), Expect = 1e-25 Identities = 52/66 (78%), Positives = 57/66 (86%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEAY YRMIFERFFPQNSA L+VPGG S+ACST KA+EWDA WS NLDPSGRAALGVH Sbjct: 491 TKEAYYYRMIFERFFPQNSARLSVPGGASIACSTEKAIEWDAAWSNNLDPSGRAALGVHD 550 Query: 131 XAYEQE 114 AY+ + Sbjct: 551 SAYDDQ 556
>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 553 Score = 78.6 bits (192), Expect = 4e-15 Identities = 40/64 (62%), Positives = 46/64 (71%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 +KEAY YR IFE FP SA VPGGPSVACS+AKA+EWD + DPSGR A+GVH Sbjct: 491 SKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGR-AVGVHQ 549 Query: 131 XAYE 120 AY+ Sbjct: 550 SAYK 553
>ASNS_MAIZE (P49094) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 77.0 bits (188), Expect = 1e-14 Identities = 35/52 (67%), Positives = 40/52 (76%) Frame = -2 Query: 308 KEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 KEAY YRMIFER FPQ+SA TVP GPS+ACST A+EW +W + DPSGR Sbjct: 492 KEAYYYRMIFERLFPQDSARETVPWGPSIACSTPAAIEWVEQWKASNDPSGR 543
>ASNS_SANAU (O24338) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 524 Score = 37.4 bits (85), Expect = 0.010 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQ 261 TKEAY YRMIFERFFPQ Sbjct: 491 TKEAYYYRMIFERFFPQ 507
>ASNS2_YEAST (P49090) Asparagine synthetase [glutamine-hydrolyzing] 2 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Length = 571 Score = 35.0 bits (79), Expect = 0.048 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEW--DARWSGNLDPSGRAA 147 TKEAY YR+ F+ +FPQ +A TV + W A W DPSGR A Sbjct: 519 TKEAYWYRLKFDAWFPQKTAADTV-------------MRWIPKADWGCAEDPSGRYA 562
>ASNS_MOUSE (Q61024) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 32.0 bits (71), Expect = 0.40 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 TKE Y YR IFER +P + LT W +W DPS R Sbjct: 511 TKEGYFYRQIFERHYPGRADWLT--------------HYWMPKWINATDPSAR 549
>ASNS_CRIGR (P19891) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 32.0 bits (71), Expect = 0.40 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 TKE Y YR IFER +P + LT W +W DPS R Sbjct: 511 TKEGYYYRQIFERHYPGRADWLT--------------HYWMPKWINATDPSAR 549
>ASNS1_YEAST (P49089) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) Length = 571 Score = 31.6 bits (70), Expect = 0.53 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEW--DARWSGNLDPSGRAA 147 TKEA+ YR+ F+ FPQ + TV + W A W DPSGR A Sbjct: 520 TKEAFWYRLKFDALFPQKTVADTV-------------MRWIPKADWGCAEDPSGRYA 563
>ASNS_CHICK (Q5ZJU3) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 31.6 bits (70), Expect = 0.53 Identities = 19/53 (35%), Positives = 23/53 (43%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 TKE+Y YR IFE+ +P S+ L W RW DPS R Sbjct: 511 TKESYYYRQIFEKHYPGRSSWL--------------PHYWMPRWVEATDPSAR 549
>ASNS_SCHPO (P78753) Probable asparagine synthetase [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 556 Score = 31.6 bits (70), Expect = 0.53 Identities = 21/62 (33%), Positives = 27/62 (43%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 TKEA+ YR +F+ FP+ A + P A W DPSGR G H+ Sbjct: 506 TKEAFWYRKLFDEIFPRQCADTVMRWVPK------------AEWGCPEDPSGRYQAG-HV 552 Query: 131 XA 126 A Sbjct: 553 AA 554
>SIX3_CHICK (O42406) Homeobox protein SIX3 (Sine oculis homeobox homolog 3)| (CSIX3) Length = 314 Score = 30.8 bits (68), Expect = 0.90 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Frame = -1 Query: 267 PPELGN-------PDSARRAKRRMQHGEGSRVGCSVVGEPGSLRESSTWSPSXGL*AGAS 109 P ++GN D A AK R+QH + G + EPG SS SPS AS Sbjct: 229 PTQVGNWFKNRRQRDRAAAAKNRLQHQAIGQSGMRSLAEPGCPTHSSAESPS----TAAS 284 Query: 108 PSXHXGRXQXXAE 70 P+ AE Sbjct: 285 PTTSVSSLTERAE 297
>POLG_RHDVF (P27410) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 30.4 bits (67), Expect = 1.2 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 209 PCCMRRLARLALSGLPSSGGRTSQISSCN 295 PCC+R RLA P G+ + +CN Sbjct: 33 PCCIRATGRLAWPVFPGQNGKEGPLETCN 61
>POLG_RHDV3 (P27411) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 30.4 bits (67), Expect = 1.2 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 209 PCCMRRLARLALSGLPSSGGRTSQISSCN 295 PCC+R RLA P G+ + +CN Sbjct: 33 PCCIRATGRLAWPVFPGQNGKEGPLETCN 61
>DNLJ_MYCLE (O33102) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 694 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +2 Query: 104 LGDAPAHRPXDGLQVLLSLRDPGSPTTEHPTLL 202 LG RP Q L+LRD G P +EH TL+ Sbjct: 238 LGHIEGFRPATQHQAYLALRDWGLPVSEHTTLV 270
>ASNS_RAT (P49088) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 TKE Y YR IFE +P + LT W +W DPS R Sbjct: 511 TKEGYYYRQIFEHHYPGRADWLT--------------HYWMPKWINATDPSAR 549
>ASNS_PONPY (Q5R6W9) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 TKE Y YR +FER +P + L + W +W DPS R Sbjct: 511 TKEGYYYRQVFERHYPGRADWL--------------SHYWMPKWINATDPSAR 549
>ASNS_MESAU (P17714) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/53 (33%), Positives = 21/53 (39%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 TKE Y YR IFE +P + LT W +W DPS R Sbjct: 511 TKEGYFYRQIFEHHYPGRADWLT--------------HYWMPKWINATDPSAR 549
>ASNS_HUMAN (P08243) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) (Cell cycle control protein TS11) Length = 560 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = -2 Query: 311 TKEAYCYRMIFERFFPQNSAILTVPGGPSVACSTAKAVEWDARWSGNLDPSGR 153 TKE Y YR +FER +P + L + W +W DPS R Sbjct: 511 TKEGYYYRQVFERHYPGRADWL--------------SHYWMPKWINATDPSAR 549
>POLG_RHDVB (Q89273) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 29.3 bits (64), Expect = 2.6 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +2 Query: 209 PCCMRRLARLALSGLPSSGGRTSQISSCN 295 PCC+R +LA P G+ + +CN Sbjct: 33 PCCIRATGKLAWPVFPGQNGKEGPLKTCN 61
>FOXH1_XENLA (P70056) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (xFAST-1) Length = 518 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = -1 Query: 159 RESSTWSPSXGL*AGASPSXHXG 91 RE TWSP G G SP H G Sbjct: 62 REGGTWSPDRGSMYGLSPGTHEG 84
>ISP5_SCHPO (P40901) Sexual differentiation process putative amino-acid| permease isp5 Length = 580 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Frame = -1 Query: 309 KRGLLLQDDI*EVLPPELGNPDSARR---AKRRMQHGEGSRVGCSV-VGEPGSLRESSTW 142 +RG L Q LPPE G P +R A+ G G +G V VG +LRE Sbjct: 56 ERGNLFQRWYRSFLPPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAA 115 Query: 141 S 139 S Sbjct: 116 S 116
>VG42_BPMU (Q9T1V6) Protein gp42| Length = 690 Score = 27.7 bits (60), Expect = 7.6 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +2 Query: 116 PAHRPXDGLQVLLSLRDPGSPTTEHPTLLPSPCCMRRLARLA 241 PA RP +L+L PG P T P LP P L+RLA Sbjct: 466 PAPRP------VLALPPPGVPVTARPAPLPLPGKSGLLSRLA 501
>MURD_NITEU (Q82VS5) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 471 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Frame = -2 Query: 293 YRMIFERFFPQNSAILTVPGG------PSVACSTAKAVEWDARWSGNLDPSGRAALGVHL 132 + + +++ P + IL + G S+ K WD +GN+ P+ AL + Sbjct: 101 FAVALDQYAPPGTKILAITGSNGKTTVTSMVGEMVKNAGWDVEVAGNIGPAALDALMQRM 160 Query: 131 XAYEQEHL 108 A + HL Sbjct: 161 DANKWPHL 168
>FUT7_HUMAN (Q11130) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 7) (FUCT-VII) (Selectin-ligand synthase) Length = 342 Score = 27.7 bits (60), Expect = 7.6 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = +2 Query: 74 AXXWXLP*WXLGDAPAHRPXDGLQVLLSLRDPGSPTTEHPTLLPSPCCMR-RLARLALS 247 A W L W LG AP P Q +++ P T+ P LPS C R +AR LS Sbjct: 25 AALWLL--WLLGSAPRGTPAP--QPTITILVWHWPFTDQPPELPSDTCTRYGIARCHLS 79
>SIX3_HUMAN (O95343) Homeobox protein SIX3 (Sine oculis homeobox homolog 3)| Length = 332 Score = 27.3 bits (59), Expect = 10.0 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%) Frame = -1 Query: 267 PPELGN-------PDSARRAKRRMQHGEGSRVGCSVVGEPGSLRESSTWSPSXGL*AGAS 109 P ++GN D A AK R+QH G + EPG S SPS AS Sbjct: 247 PTQVGNWFKNRRQRDRAAAAKNRLQHQAIGPSGMRSLAEPGCPTHGSAESPS----TAAS 302 Query: 108 PS 103 P+ Sbjct: 303 PT 304
>SIX3_MOUSE (Q62233) Homeobox protein SIX3 (Sine oculis homeobox homolog 3)| Length = 333 Score = 27.3 bits (59), Expect = 10.0 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%) Frame = -1 Query: 267 PPELGN-------PDSARRAKRRMQHGEGSRVGCSVVGEPGSLRESSTWSPSXGL*AGAS 109 P ++GN D A AK R+QH G + EPG S SPS AS Sbjct: 248 PTQVGNWFKNRRQRDRAAAAKNRLQHQAIGPSGMRSLAEPGCPTHGSAESPS----TAAS 303 Query: 108 PS 103 P+ Sbjct: 304 PT 305
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = +2 Query: 167 PGSPTTEHPTLLPSPCCMRRLARLALSGLPSSGG 268 PG P P P PCC A +A G SGG Sbjct: 1180 PGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKSGG 1213
>ZN513_HUMAN (Q8N8E2) Zinc finger protein 513| Length = 479 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 264 PELGNPDSARRAKRRMQHGEGSRVGCSVVG 175 PEL P + R + ++ GEGSR+G ++ G Sbjct: 246 PELLFPWTCRGCGQELEEGEGSRLGAAMCG 275
>SECA_STACA (P47994) Preprotein translocase secA subunit| Length = 844 Score = 27.3 bits (59), Expect = 10.0 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 191 DARWSGNLDPSGRAALGVHLXAYEQEH 111 D RW+ ++D + G+HL +Y Q++ Sbjct: 726 DGRWTDHIDTMDQLRQGIHLRSYGQQN 752 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,434,533 Number of Sequences: 219361 Number of extensions: 931136 Number of successful extensions: 3083 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3083 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
