ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473880.1| Oryza sativa (japonica cultivar-group), predic... 196 6e-47
2gb|AF251073.1|AF251073 Oryza sativa putative aminotransferase mR... 196 6e-47
3dbj|AK102306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
4dbj|AK061967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
5gb|AF297651.1| Oryza sativa putative aminotransferase mRNA, comp... 196 6e-47
6emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 94 6e-16
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
8gb|BT018487.1| Zea mays clone EL01N0424F04.d mRNA sequence 88 4e-14
9ref|XM_463843.1| Oryza sativa (japonica cultivar-group), mRNA 78 4e-11
10gb|BT018495.1| Zea mays clone EL01N0426C11.d mRNA sequence 78 4e-11
11gb|BT017234.1| Zea mays clone EL01N0304E10.c mRNA sequence 78 4e-11
12gb|AF324485.1|AF324485 Oryza sativa aminotransferase-like protei... 78 4e-11
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
14dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
15ref|XM_473879.1| Oryza sativa (japonica cultivar-group), predic... 70 9e-09
16dbj|AK100259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
17gb|AY105736.1| Zea mays PCO069643 mRNA sequence 70 9e-09
18ref|XM_480608.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
19dbj|AK103274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
21dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
22dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
23gb|AC105252.2| Homo sapiens BAC clone RP11-285A15 from 4, comple... 42 2.0
24gb|AC154471.2| Mus musculus BAC clone RP23-195D3 from chromosome... 42 2.0
25gb|AC147339.2| Pan troglodytes BAC clone CH251-65E18 from Y, com... 40 7.9
26emb|BX323879.11| Zebrafish DNA sequence from clone DKEY-30L21 in... 40 7.9
27emb|CR847802.11| Zebrafish DNA sequence from clone DKEY-48N1 in ... 40 7.9
28emb|AL391827.18| Human DNA sequence from clone RP11-63G20 on chr... 40 7.9
29emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chr... 40 7.9
30emb|AL607107.8| Mouse DNA sequence from clone RP23-230C18 on chr... 40 7.9
31dbj|BS000651.1| Pan troglodytes chromosome Y clone: PTBY-012K02,... 40 7.9
32dbj|BS000559.1| Pan troglodytes chromosome Y clone:PTB-473B14, c... 40 7.9
33gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.9
34dbj|AK169879.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.9
35emb|BX323450.8| Zebrafish DNA sequence from clone RP71-40N14 in ... 40 7.9
36gb|AC026269.26| Homo sapiens chromosome 11, clone RP11-745E9, co... 40 7.9
37emb|BX255889.7| Zebrafish DNA sequence from clone CH211-270O7 in... 40 7.9
38emb|BX323039.6| Zebrafish DNA sequence from clone CH211-145A11 i... 40 7.9
39gb|AC062031.7| Homo sapiens BAC clone RP11-474G7 from 2, complet... 40 7.9
40emb|CR626874.10| Zebrafish DNA sequence from clone CH211-219H2 i... 40 7.9
41gb|AC157803.6| Mus musculus chromosome 1, clone RP24-302H15, com... 40 7.9
42gb|AC102401.11| Mus musculus chromosome 1, clone RP24-257D18, co... 40 7.9 
>ref|XM_473880.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score =  196 bits (99), Expect = 6e-47
 Identities = 222/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 368
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1529 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1470

                                                                        
Query: 369  tcaacttcgccaagggtcattgtcaatggtggtgacatcataatgctgtcgcccgcaacc 428
            || |||||  || |||||||| ||||||||||||||||||| ||| |||| || ||||| 
Sbjct: 1469 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1410

                                                                        
Query: 429  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 488
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1409 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 1350

                                                                        
Query: 489  gcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaattatcaaccct 548
            |||||||||||   || | | ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 1349 gcagggaatggatcatttggcgatttgttgtctgcgaattcagttccaagtatcaaccct 1290

                                   
Query: 549  acaccacggatctccccaacaat 571
            |||||||| ||||| ||||||||
Sbjct: 1289 acaccacgtatctctccaacaat 1267
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>gb|AF251073.1|AF251073 Oryza sativa putative aminotransferase mRNA, partial cds
          Length = 799

 Score =  196 bits (99), Expect = 6e-47
 Identities = 222/263 (84%)
 Strand = Plus / Minus

                                                                       
Query: 309 agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 368
           ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 675 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 616

                                                                       
Query: 369 tcaacttcgccaagggtcattgtcaatggtggtgacatcataatgctgtcgcccgcaacc 428
           || |||||  || |||||||| ||||||||||||||||||| ||| |||| || ||||| 
Sbjct: 615 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 556

                                                                       
Query: 429 ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 488
           ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 555 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 496

                                                                       
Query: 489 gcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaattatcaaccct 548
           |||||||||||   || | | ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 495 gcagggaatggatcatttggcgatttgttgtctgcgaattcagttccaagtatcaaccct 436

                                  
Query: 549 acaccacggatctccccaacaat 571
           |||||||| ||||| ||||||||
Sbjct: 435 acaccacgtatctctccaacaat 413
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>dbj|AK102306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090A04, full
            insert sequence
          Length = 2070

 Score =  196 bits (99), Expect = 6e-47
 Identities = 222/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 368
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1712 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1653

                                                                        
Query: 369  tcaacttcgccaagggtcattgtcaatggtggtgacatcataatgctgtcgcccgcaacc 428
            || |||||  || |||||||| ||||||||||||||||||| ||| |||| || ||||| 
Sbjct: 1652 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1593

                                                                        
Query: 429  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 488
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1592 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 1533

                                                                        
Query: 489  gcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaattatcaaccct 548
            |||||||||||   || | | ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 1532 gcagggaatggatcatttggcgatttgttgtctgcgaattcagttccaagtatcaaccct 1473

                                   
Query: 549  acaccacggatctccccaacaat 571
            |||||||| ||||| ||||||||
Sbjct: 1472 acaccacgtatctctccaacaat 1450
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>dbj|AK061967.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G12, full
            insert sequence
          Length = 1513

 Score =  196 bits (99), Expect = 6e-47
 Identities = 222/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 368
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1129 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1070

                                                                        
Query: 369  tcaacttcgccaagggtcattgtcaatggtggtgacatcataatgctgtcgcccgcaacc 428
            || |||||  || |||||||| ||||||||||||||||||| ||| |||| || ||||| 
Sbjct: 1069 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1010

                                                                        
Query: 429  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 488
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1009 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 950

                                                                        
Query: 489  gcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaattatcaaccct 548
            |||||||||||   || | | ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 949  gcagggaatggatcatttggcgatttgttgtctgcgaattcagttccaagtatcaaccct 890

                                   
Query: 549  acaccacggatctccccaacaat 571
            |||||||| ||||| ||||||||
Sbjct: 889  acaccacgtatctctccaacaat 867
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>gb|AF297651.1| Oryza sativa putative aminotransferase mRNA, complete cds
          Length = 1993

 Score =  196 bits (99), Expect = 6e-47
 Identities = 222/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 368
            ||||| ||||| ||| |||| |||||||| |  || |||||||| |||||||| ||||| 
Sbjct: 1620 agctcagccaccctctcctcggtggccttgagtgcatctccatagatgctcaccagctcc 1561

                                                                        
Query: 369  tcaacttcgccaagggtcattgtcaatggtggtgacatcataatgctgtcgcccgcaacc 428
            || |||||  || |||||||| ||||||||||||||||||| ||| |||| || ||||| 
Sbjct: 1560 tcgacttcatcaggggtcattatcaatggtggtgacatcatgatgttgtctccagcaact 1501

                                                                        
Query: 429  ctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacaccccattca 488
            ||||||| |||||| |||||||||||||||   || ||||| || || || |||||||||
Sbjct: 1500 ctaaccagcatgccgcgcttctggcactccgctccaaagatcgcgccgacgccccattca 1441

                                                                        
Query: 489  gcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaattatcaaccct 548
            |||||||||||   || | | ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 1440 gcagggaatggatcatttggcgatttgttgtctgcgaattcagttccaagtatcaaccct 1381

                                   
Query: 549  acaccacggatctccccaacaat 571
            |||||||| ||||| ||||||||
Sbjct: 1380 acaccacgtatctctccaacaat 1358
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>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 479   accccattcagcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaat 538
             |||||||||||||||||||||   || | | ||||||||||| |||||||||||||||| 
Sbjct: 36794 accccattcagcagggaatggatcatttggcgatttgttgtctgcgaattcagttccaag 36735

                                    
Query: 539   tatcaaccctacaccacggatct 561
             |||||||||||||||||| ||||
Sbjct: 36734 tatcaaccctacaccacgtatct 36712



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 382   gggtcattgtcaatggtggtgacatcataatgctgtcgcccgcaaccctaaccaacatgc 441
             |||||||| ||||||||||||||||||| ||| |||| || ||||| ||||||| |||||
Sbjct: 37184 gggtcattatcaatggtggtgacatcatgatgttgtctccagcaactctaaccagcatgc 37125

                              
Query: 442   cacgcttctggcactcc 458
             | |||||||||||||||
Sbjct: 37124 cgcgcttctggcactcc 37108



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                         
Query: 294   tttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatat 353
             |||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || |||
Sbjct: 30101 tttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtat 30042

                          
Query: 354   atgctcacaagct 366
             |||||||| ||||
Sbjct: 30041 atgctcaccagct 30029
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                            
Query: 479      accccattcagcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaat 538
                |||||||||||||||||||||   || | | ||||||||||| |||||||||||||||| 
Sbjct: 31215193 accccattcagcagggaatggatcatttggcgatttgttgtctgcgaattcagttccaag 31215134

                                       
Query: 539      tatcaaccctacaccacggatct 561
                |||||||||||||||||| ||||
Sbjct: 31215133 tatcaaccctacaccacgtatct 31215111



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                            
Query: 382      gggtcattgtcaatggtggtgacatcataatgctgtcgcccgcaaccctaaccaacatgc 441
                |||||||| ||||||||||||||||||| ||| |||| || ||||| ||||||| |||||
Sbjct: 31215583 gggtcattatcaatggtggtgacatcatgatgttgtctccagcaactctaaccagcatgc 31215524

                                 
Query: 442      cacgcttctggcactcc 458
                | |||||||||||||||
Sbjct: 31215523 cgcgcttctggcactcc 31215507



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                            
Query: 294      tttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatat 353
                |||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || |||
Sbjct: 31208500 tttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtat 31208441

                             
Query: 354      atgctcacaagct 366
                |||||||| ||||
Sbjct: 31208440 atgctcaccagct 31208428
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>gb|BT018487.1| Zea mays clone EL01N0424F04.d mRNA sequence
          Length = 1851

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Minus

                                                                        
Query: 402  gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 461
            |||||||| |||  |||||| |||||||| |||| |||||| ||||||||||||||||  
Sbjct: 1401 gacatcatgatggcgtcgccagcaaccctgaccagcatgccgcgcttctggcactcctct 1342

                                                                        
Query: 462  ccgaagatagcaccaacaccccattcagcagggaatgggctatctcgtgatttgttgtcg 521
            || ||||| |||||||| |||||||| ||||||||| |   |    |||||||||||| |
Sbjct: 1341 ccaaagatggcaccaaccccccattcggcagggaatagatcagtcggtgatttgttgttg 1282

                                                        
Query: 522  gcgaattcagttccaattatcaaccctacaccacggatctcccc 565
            | |||||| ||||| || |||| |||||  ||||| ||||||||
Sbjct: 1281 gtgaattcggttcccataatcatccctaagccacgtatctcccc 1238
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>ref|XM_463843.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1452

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 368
            ||||||||||||||  ||||||| ||||||| ||||||||||||||||||||| || | |
Sbjct: 1433 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcaccagttta 1374

                                                   
Query: 369  tcaacttcgccaagggtcattgtcaatggtggtgacatc 407
            |||| |||  || |||| ||| ||| |||||| ||||||
Sbjct: 1373 tcaatttcttcacgggttattatcagtggtggggacatc 1335



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 124/155 (80%)
 Strand = Plus / Minus

                                                                        
Query: 425  aaccctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacacccca 484
            |||| |||||| ||||||||| ||||  |||||||| || || ||  |||||||||||||
Sbjct: 1317 aaccttaaccatcatgccacgtttcttacactcctgtccaaatatttcaccaacacccca 1258

                                                                        
Query: 485  ttcagcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaattatcaa 544
             |||  |||||||     || | |||||||||| |||| ||| |||||| | || | |||
Sbjct: 1257 ctcaaaagggaataactcatatggtgatttgttatcggtgaactcagttgctatcagcaa 1198

                                               
Query: 545  ccctacaccacggatctccccaacaattgggcttc 579
             |||||||||||  |||||||||||||||| ||||
Sbjct: 1197 tcctacaccacgtgtctccccaacaattggacttc 1163
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>gb|BT018495.1| Zea mays clone EL01N0426C11.d mRNA sequence
          Length = 1897

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                        
Query: 402  gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 461
            |||||||| |||  |||||| || ||||| |||| |||||| |||||||||||||| |  
Sbjct: 1498 gacatcatgatggcgtcgccagcgaccctgaccagcatgccgcgcttctggcactcttcg 1439

                                               
Query: 462  ccgaagatagcaccaacaccccattcagcagggaa 496
            |||||||| |||||||| |||||||| ||||||||
Sbjct: 1438 ccgaagatggcaccaaccccccattcggcagggaa 1404
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>gb|BT017234.1| Zea mays clone EL01N0304E10.c mRNA sequence
          Length = 670

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                       
Query: 402 gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 461
           |||||||| |||  |||||| || ||||| |||| |||||| |||||||||||||| |  
Sbjct: 201 gacatcatgatggcgtcgccagcgaccctcaccagcatgccgcgcttctggcactcttcg 142

                                              
Query: 462 ccgaagatagcaccaacaccccattcagcagggaa 496
           |||||||| |||||||| |||||||| ||||||||
Sbjct: 141 ccgaagatggcaccaaccccccattcggcagggaa 107
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>gb|AF324485.1|AF324485 Oryza sativa aminotransferase-like protein mRNA, complete cds
          Length = 1632

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagctca 368
            ||||||||||||||  ||||||| ||||||| ||||||||||||||||||||| || | |
Sbjct: 1453 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcaccagttta 1394

                                                   
Query: 369  tcaacttcgccaagggtcattgtcaatggtggtgacatc 407
            |||| |||  || |||| ||| ||| |||||| ||||||
Sbjct: 1393 tcaatttcttcacgggttattatcagtggtggggacatc 1355



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 124/155 (80%)
 Strand = Plus / Minus

                                                                        
Query: 425  aaccctaaccaacatgccacgcttctggcactcctgcccgaagatagcaccaacacccca 484
            |||| |||||| ||||||||| ||||  |||||||| || || ||  |||||||||||||
Sbjct: 1337 aaccttaaccatcatgccacgtttcttacactcctgtccaaatatttcaccaacacccca 1278

                                                                        
Query: 485  ttcagcagggaatgggctatctcgtgatttgttgtcggcgaattcagttccaattatcaa 544
             |||  |||||||     || | |||||||||| |||| ||| |||||| | || | |||
Sbjct: 1277 ctcaaaagggaataactcatatggtgatttgttatcggtgaactcagttgctatcagcaa 1218

                                               
Query: 545  ccctacaccacggatctccccaacaattgggcttc 579
             |||||||||||  |||||||||||||||| ||||
Sbjct: 1217 tcctacaccacgtgtctccccaacaattggacttc 1183
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                        
Query: 309    agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagct 366
              ||||||||||||||  ||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 679616 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcaccagct 679673
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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1399_H05
          Length = 147670

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                       
Query: 309   agctctgccactctcccctctgtggccttcatagcttctccatatatgctcacaagct 366
             ||||||||||||||  ||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 36511 agctctgccactctttcctctgttgccttcagagcttctccatatatgctcaccagct 36568
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>ref|XM_473879.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1494

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  tttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatat 353
            |||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || |||
Sbjct: 1490 tttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtat 1431

                                   
Query: 354  atgctcacaagctcatcaacttc 376
            |||||||| ||  ||||||||||
Sbjct: 1430 atgctcaccagtccatcaacttc 1408
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>dbj|AK100259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062G17, full
            insert sequence
          Length = 1906

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  tttttcttcgacttgagctctgccactctcccctctgtggccttcatagcttctccatat 353
            |||||||| ||| | ||||||||||||||  |||| |||||||||| |||||| || |||
Sbjct: 1756 tttttcttggacctcagctctgccactctttcctcggtggccttcaaagcttcaccgtat 1697

                                   
Query: 354  atgctcacaagctcatcaacttc 376
            |||||||| ||  ||||||||||
Sbjct: 1696 atgctcaccagtccatcaacttc 1674
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>gb|AY105736.1| Zea mays PCO069643 mRNA sequence
          Length = 2096

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                        
Query: 402  gacatcataatgctgtcgcccgcaaccctaaccaacatgccacgcttctggcactcctgc 461
            |||||||| |||  |||||| || ||||| |||| |||||| |||||||||||||| |  
Sbjct: 1659 gacatcatgatggcgtcgccagcgaccctcaccagcatgccgcgcttctggcactcttcg 1600

                                               
Query: 462  ccgaagatagcaccaacaccccattcagcagggaa 496
            |||||||| ||||| || |||||||| ||||||||
Sbjct: 1599 ccgaagatggcaccgaccccccattcggcagggaa 1565
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>ref|XM_480608.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                        
Query: 473  accaacaccccattcagcagggaatgggctatctcgtgatttgttgtcggcgaattcagt 532
            |||||||||||||||||||||||||||   ||   | || ||||||||| | ||||||||
Sbjct: 1454 accaacaccccattcagcagggaatggatcattcggagacttgttgtcgacaaattcagt 1395

                                                           
Query: 533  tccaattatcaaccctacaccacggatctccccaacaattgggcttc 579
             |||| |||||  |||| |||||| ||||| || |||||||| ||||
Sbjct: 1394 cccaagtatcagtcctaaaccacgtatctcgcctacaattggacttc 1348
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>dbj|AK103274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124J10, full
            insert sequence
          Length = 1848

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                        
Query: 473  accaacaccccattcagcagggaatgggctatctcgtgatttgttgtcggcgaattcagt 532
            |||||||||||||||||||||||||||   ||   | || ||||||||| | ||||||||
Sbjct: 1454 accaacaccccattcagcagggaatggatcattcggagacttgttgtcgacaaattcagt 1395

                                                           
Query: 533  tccaattatcaaccctacaccacggatctccccaacaattgggcttc 579
             |||| |||||  |||| |||||| ||||| || |||||||| ||||
Sbjct: 1394 cccaagtatcagtcctaaaccacgtatctcgcctacaattggacttc 1348
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 477     acaccccattcagcagggaatgg 499
               |||||||||||||||||||||||
Sbjct: 6164652 acaccccattcagcagggaatgg 6164674
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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 477   acaccccattcagcagggaatgg 499
             |||||||||||||||||||||||
Sbjct: 28045 acaccccattcagcagggaatgg 28067
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>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0486F07
          Length = 154926

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 477    acaccccattcagcagggaatgg 499
              |||||||||||||||||||||||
Sbjct: 120669 acaccccattcagcagggaatgg 120691
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>gb|AC105252.2| Homo sapiens BAC clone RP11-285A15 from 4, complete sequence
          Length = 194943

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   ctttggtgaaagaaatacttc 168
             |||||||||||||||||||||
Sbjct: 87648 ctttggtgaaagaaatacttc 87628
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>gb|AC154471.2| Mus musculus BAC clone RP23-195D3 from chromosome 14, complete sequence
          Length = 192057

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 330    gtggccttcatagcttctcca 350
              |||||||||||||||||||||
Sbjct: 155637 gtggccttcatagcttctcca 155657
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>gb|AC147339.2| Pan troglodytes BAC clone CH251-65E18 from Y, complete sequence
          Length = 178935

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    ttatctatacatgcaagaat 101
             ||||||||||||||||||||
Sbjct: 25517 ttatctatacatgcaagaat 25498
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>emb|BX323879.11| Zebrafish DNA sequence from clone DKEY-30L21 in linkage group 10,
              complete sequence
          Length = 243476

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tacatgcaagaatggaccca 108
              ||||||||||||||||||||
Sbjct: 104924 tacatgcaagaatggaccca 104905
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>emb|CR847802.11| Zebrafish DNA sequence from clone DKEY-48N1 in linkage group 18,
            complete sequence
          Length = 172545

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 394  atggtggtgacatcataatgctgt 417
            |||||||||||| |||||||||||
Sbjct: 7509 atggtggtgacagcataatgctgt 7532
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>emb|AL391827.18| Human DNA sequence from clone RP11-63G20 on chromosome 10 Contains the
             5' end of a novel gene (FLJ13114 FLJ40653) and two CpG
             islands, complete sequence
          Length = 183430

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    ttatttggcagattatctatacat 93
             |||||||||| |||||||||||||
Sbjct: 71327 ttatttggcatattatctatacat 71304
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>emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chromosome 11p12-13,
             complete sequence
          Length = 106073

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   ccactctcccctctgtggcc 335
             ||||||||||||||||||||
Sbjct: 94849 ccactctcccctctgtggcc 94830
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>emb|AL607107.8| Mouse DNA sequence from clone RP23-230C18 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 125442

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   aatctatcttgtgtggaatc 128
             ||||||||||||||||||||
Sbjct: 14625 aatctatcttgtgtggaatc 14606
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>dbj|BS000651.1| Pan troglodytes chromosome Y clone: PTBY-012K02, complete sequence
          Length = 162358

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    ttatctatacatgcaagaat 101
             ||||||||||||||||||||
Sbjct: 25295 ttatctatacatgcaagaat 25276
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>dbj|BS000559.1| Pan troglodytes chromosome Y clone:PTB-473B14, complete sequences
          Length = 127252

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    ttatctatacatgcaagaat 101
             ||||||||||||||||||||
Sbjct: 15570 ttatctatacatgcaagaat 15551
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 82       ttatctatacatgcaagaat 101
                ||||||||||||||||||||
Sbjct: 16667397 ttatctatacatgcaagaat 16667416
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>dbj|AK169879.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630002F13
           product:ATP-binding cassette, sub-family A (ABC1),
           member 5, full insert sequence
          Length = 2097

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 241 tattctgtacacatccgaga 260
           ||||||||||||||||||||
Sbjct: 168 tattctgtacacatccgaga 187
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>emb|BX323450.8| Zebrafish DNA sequence from clone RP71-40N14 in linkage group 17,
              complete sequence
          Length = 178920

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 394    atggtggtgacatcataatgctgt 417
              ||||||||| ||||||||||||||
Sbjct: 157028 atggtggtggcatcataatgctgt 157005
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>gb|AC026269.26| Homo sapiens chromosome 11, clone RP11-745E9, complete sequence
          Length = 173145

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   ccactctcccctctgtggcc 335
             ||||||||||||||||||||
Sbjct: 31190 ccactctcccctctgtggcc 31171
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>emb|BX255889.7| Zebrafish DNA sequence from clone CH211-270O7 in linkage group 17,
             complete sequence
          Length = 162918

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 394   atggtggtgacatcataatgctgt 417
             ||||||||| ||||||||||||||
Sbjct: 59374 atggtggtggcatcataatgctgt 59351
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>emb|BX323039.6| Zebrafish DNA sequence from clone CH211-145A11 in linkage group 10,
              complete sequence
          Length = 150772

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tacatgcaagaatggaccca 108
              ||||||||||||||||||||
Sbjct: 136081 tacatgcaagaatggaccca 136100
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>gb|AC062031.7| Homo sapiens BAC clone RP11-474G7 from 2, complete sequence
          Length = 172792

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   ctctgccactctcccctctg 330
             ||||||||||||||||||||
Sbjct: 91573 ctctgccactctcccctctg 91554
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>emb|CR626874.10| Zebrafish DNA sequence from clone CH211-219H2 in linkage group 18,
             complete sequence
          Length = 214825

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 394   atggtggtgacatcataatgctgt 417
             |||||||||||| |||||||||||
Sbjct: 61998 atggtggtgacagcataatgctgt 61975
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>gb|AC157803.6| Mus musculus chromosome 1, clone RP24-302H15, complete sequence
          Length = 136168

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 526    attcagttccaattatcaac 545
              ||||||||||||||||||||
Sbjct: 132893 attcagttccaattatcaac 132874
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>gb|AC102401.11| Mus musculus chromosome 1, clone RP24-257D18, complete sequence
          Length = 166242

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   attcagttccaattatcaac 545
             ||||||||||||||||||||
Sbjct: 43281 attcagttccaattatcaac 43300


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,315,465
Number of Sequences: 3902068
Number of extensions: 4315465
Number of successful extensions: 80522
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80333
Number of HSP's gapped (non-prelim): 182
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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