ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags11g17 |
|---|---|
| Clone Library Name | barley_pub |
>RS3_RAT (P62909) 40S ribosomal protein S3| Length = 243 Score = 80.1 bits (196), Expect = 1e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_MOUSE (P62908) 40S ribosomal protein S3| Length = 243 Score = 80.1 bits (196), Expect = 1e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS32_XENLA (P47835) 40S ribosomal protein S3-B (S1B)| Length = 246 Score = 80.1 bits (196), Expect = 1e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS31_XENLA (P02350) 40S ribosomal protein S3-A (S1A)| Length = 246 Score = 80.1 bits (196), Expect = 1e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_ICTPU (Q90YS2) 40S ribosomal protein S3| Length = 245 Score = 80.1 bits (196), Expect = 1e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216
>RS3_PONPY (Q5R465) 40S ribosomal protein S3| Length = 243 Score = 79.7 bits (195), Expect = 2e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_HUMAN (P23396) 40S ribosomal protein S3| Length = 243 Score = 79.7 bits (195), Expect = 2e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_BOVIN (Q3T169) 40S ribosomal protein S3| Length = 243 Score = 79.7 bits (195), Expect = 2e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_AMBME (P79891) 40S ribosomal protein S3| Length = 253 Score = 79.7 bits (195), Expect = 2e-15 Identities = 38/54 (70%), Positives = 41/54 (75%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXE 243 PVN Y+D VRHVL RQGVLGIKVKIML WDP GK+GP PL D V+I PK E Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_DROME (Q06559) 40S ribosomal protein S3| Length = 246 Score = 73.2 bits (178), Expect = 1e-13 Identities = 33/60 (55%), Positives = 41/60 (68%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXEDXLRPP 225 P N+Y++ RHVL RQGVLGIKVK+ML +DPK K+GP PL D V++ PK E P Sbjct: 165 PCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP 224
>RS3_MANSE (P48153) 40S ribosomal protein S3| Length = 243 Score = 70.1 bits (170), Expect = 1e-12 Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXEDX-LRP 228 P N+Y++ RHVL RQGVLGIKVKIML WD +GK GP P D + + PK E L P Sbjct: 164 PCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEP 223 Query: 227 PALIEV*TPSSASRP 183 + I P+ +P Sbjct: 224 TSDIRSLAPAPLPQP 238
>RS3_CAEEL (P48152) 40S ribosomal protein S3| Length = 247 Score = 65.5 bits (158), Expect = 3e-11 Identities = 33/60 (55%), Positives = 40/60 (66%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXEDXLRPP 225 PVN+YI VRHV RQGV+GIKVKIML +DP+G+ GP L D V I P+ E + P Sbjct: 165 PVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEP 224
>RS3_YEAST (P05750) 40S ribosomal protein S3 (YS3) (RP13)| Length = 239 Score = 60.5 bits (145), Expect = 9e-10 Identities = 34/62 (54%), Positives = 41/62 (66%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXEDXLRPP 225 PVN++ID RHVL RQGVLGIKVKIM D K + GP L D VTI PK E+ + P Sbjct: 162 PVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAP 219 Query: 224 AL 219 ++ Sbjct: 220 SV 221
>RS3_SCHPO (O60128) 40S ribosomal protein S3| Length = 249 Score = 53.1 bits (126), Expect = 2e-07 Identities = 28/60 (46%), Positives = 37/60 (61%) Frame = -1 Query: 404 PVNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPPKXEDXLRPP 225 P ++ID+ RHVL RQGVLG+KVKIML P+ K L D+V + PK E+ + P Sbjct: 165 PAVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3| Length = 228 Score = 52.8 bits (125), Expect = 2e-07 Identities = 25/50 (50%), Positives = 34/50 (68%) Frame = -1 Query: 401 VNEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLXDLVTIHPP 252 V +YI+ V +QGV+GI+V+IML +DP+G LGP PL D +TI P Sbjct: 175 VKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEP 224
>PRIO_MOSCH (Q68G95) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.3 bits (72), Expect = 0.28 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGAGGWGQPHGGGW 68
>PRIO_ERYPA (Q95174) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_CERTO (Q95176) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_CERNE (P61762) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_CERMO (P61761) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_MANSP (P40255) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 241 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_PREFR (P40257) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_PONPY (P40256) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_PIG (P49927) Major prion protein precursor (PrP) (CD230 antigen)| Length = 257 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_PAPHA (P67996) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_PANTR (P61768) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_MUSVI (P40244) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 257 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_MUSPF (P52114) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 257 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_MACNE (P67995) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_MACMU (P67997) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_MACFU (P67994) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_MACFA (P67992) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_MACAR (P67993) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_HYLSY (P61767) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_HYLLA (P61766) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_HUMAN (P04156) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (ASCR) (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_GORGO (P40252) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_COLGU (P40251) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_SHEEP (P23907) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_RUPRU (Q5XVM4) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_OVIMU (Q7JK02) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_OVIMO (Q7JIY2) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_OVICA (Q7JIH3) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_ODOHE (P47852) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_FELCA (O18754) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_CEREN (P67986) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_CEREL (P67987) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_CAPHI (P52113) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_CANFA (O46501) Major prion protein precursor (PrP) (CD230 antigen)| Length = 255 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_CAMDR (P79141) Major prion protein precursor (PrP) (CD230 antigen)| Length = 255 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_BUDTA (Q95M08) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO2_BOVIN (Q01880) Major prion protein 2 precursor (PrP) (Major| scrapie-associated fibril protein 2) Length = 256 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_BOSIN (Q5UJI7) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_BOSGA (Q5UJH0) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_BISBI (Q5UAF1) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_ANTCE (Q5UJG1) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO1_BOVIN (P10279) Major prion protein 1 precursor (PrP) (Major| scrapie-associated fibril protein 1) (CD230 antigen) Length = 264 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 44 QGSPGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_THEGE (Q95270) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 238 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_MACSY (P67991) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 238 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_CERAT (P67990) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 238 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQGGGGWGQPHGGGW 58
>PRIO_CERDI (P67989) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 245 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_CERAE (P67988) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 245 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQGGGGWGQPHGGGW 65
>PRIO_AOTTR (P40245) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 239 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 QS PGG PP S GGW + GGW Sbjct: 34 QSSPGGNRYPPQS-GGWGQPHGGGW 57
>PRIO_RAT (P13852) Major prion protein precursor (PrP) (CD230 antigen)| Length = 254 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP S G W + GGW Sbjct: 41 QGSPGGNRYPPQSGGTWGQPHGGGW 65
>PRIO2_TRAST (P40243) Major prion protein 2 precursor (PrP) (Major| scrapie-associated fibril protein 2) (CD230 antigen) Length = 256 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW*GQ--VCPWG 313 Q PGG PP G W + GGW GQ V WG Sbjct: 44 QGSPGGNRYPPQEGGDWGQPHGGGW-GQPHVGGWG 77
>PRIO_AILME (Q6EH52) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +2 Query: 224 PGGAXRPPXSXGGW*RGXAGGW 289 PGG PP GGW + GGW Sbjct: 47 PGGNRYPPQGGGGWGQPHGGGW 68
>PRIO_CALMO (P40248) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 241 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP G W + GGW Sbjct: 34 QGSPGGNRYPPQGGGSWGQPHGGGW 58
>PRIO_BOSTR (Q5UJG7) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP G W + GGW Sbjct: 44 QGSPGGNRYPPQGGGSWGQPHGGGW 68
>PRIO_RABIT (Q95211) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 252 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 QS PGG PP GGW + GGW Sbjct: 42 QSSPGGNRYPPQG-GGWGQPHGGGW 65
>PRIO_TRAIM (Q5UJG3) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG P GGW + GGW Sbjct: 44 QGSPGGNRYPSQGGGGWGQPHGGGW 68
>PRIO_BUBBU (Q5UJH8) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG P GGW + GGW Sbjct: 44 QGSPGGNRYPSQGGGGWGQPHGGGW 68
>PRIO1_TRAST (P40242) Major prion protein 1 precursor (PrP) (Major| scrapie-associated fibril protein 1) (CD230 antigen) Length = 264 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG P GGW + GGW Sbjct: 44 QGSPGGNRYPSQGGGGWGQPHGGGW 68
>PRIO_SIGHI (Q9Z0T3) Major prion protein precursor (PrP) (CD230 antigen)| Length = 254 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP G W + GGW Sbjct: 41 QGNPGGNRYPPQGGGTWGQPHGGGW 65
>PRIO_MESAU (P04273) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 254 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP G W + GGW Sbjct: 41 QGSPGGNRYPPQGGGTWGQPHGGGW 65
>PRIO_CRIMI (Q60468) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 254 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP G W + GGW Sbjct: 41 QGSPGGNRYPPQGGGTWGQPHGGGW 65
>PRIO_CRIGR (Q60506) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 254 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP G W + GGW Sbjct: 41 QGSPGGNRYPPQGGGTWGQPHGGGW 65
>RENI2_MOUSE (P00796) Renin-2 precursor (EC 3.4.23.15) (Angiotensinogenase)| (Submandibular gland renin) [Contains: Renin-2 heavy chain; Renin-2 light chain] Length = 401 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = -2 Query: 202 PVVQADHETAHHFG-------PSLFPILVTSGLCNVWLPSLQKFMCNAXMLCC 65 PVV ++ + ++G P F ++ +G N+W+PS + C+ L C Sbjct: 72 PVVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTK---CSRLYLAC 121
>SSRP_BACCR (Q815L5) SsrA-binding protein| Length = 155 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 63 WQHNIXALHINFCKEGNQTLHSPLVTR 143 W HN +HIN ++GN+ H PL TR Sbjct: 59 WVHN---MHINTYEQGNRFNHDPLRTR 82
>RENI1_MOUSE (P06281) Renin-1 precursor (EC 3.4.23.15) (Angiotensinogenase)| (Kidney renin) Length = 402 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 202 PVVQADHETAHHFG-------PSLFPILVTSGLCNVWLPSLQKFMCNAXMLCC 65 PVV ++ ++G P F ++ +G N+W+PS + C+ L C Sbjct: 73 PVVLTNYLNTQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTK---CSRLYLAC 122
>RT03_ORYSA (P46773) Mitochondrial ribosomal protein S3| Length = 538 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -1 Query: 398 NEYIDAXVRHVLXRQGVLGIKVKIMLDWDPKGK 300 N+ ID + V R G+ G+KV+I + KG+ Sbjct: 498 NQKIDYALAEVSTRNGISGVKVRISYSQNKKGR 530
>IL2RB_PANTR (Q38J84) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -1 Query: 341 IKVKIMLDWDPKGKLGPTTP-LXDLVTIHPP 252 ++ ++ DWDP+ LGP TP + DLV PP Sbjct: 459 LQERVPRDWDPQP-LGPPTPGVPDLVDFQPP 488
>IL2RB_HUMAN (P14784) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (p75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -1 Query: 341 IKVKIMLDWDPKGKLGPTTP-LXDLVTIHPP 252 ++ ++ DWDP+ LGP TP + DLV PP Sbjct: 459 LQERVPRDWDPQP-LGPPTPGVPDLVDFQPP 488
>K0427_MOUSE (Q6PEE2) Protein KIAA0427 homolog| Length = 623 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = -1 Query: 308 KGKLGPTTPLXDLVTIHPPKXED--------XLRPPALIEV*TPSSASRP 183 KG+ G + VT+ PK ED L PP + TP+++ RP Sbjct: 262 KGEAGSHRNAKETVTVENPKLEDGPGDTGHSGLEPPCSPDTLTPAASERP 311
>PRIO_SAISC (P40258) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 260 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQG-GGWGQPHGGGW 64
>FL2_TOBAC (Q40505) Floricaula/leafy homolog 2 (NFL2)| Length = 416 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -1 Query: 326 MLDWDPKGKLGPTTPLXDLVTIHPPKXEDXLRPP 225 + WDP+G + P T L + + PP L PP Sbjct: 10 LFKWDPRGAMPPPTRLLE-AAVAPPPPPPALPPP 42
>VIF_BIV27 (P19563) Virion infectivity factor (Q protein)| Length = 198 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 374 RHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPL 279 RH L R L + L W P G++ TTPL Sbjct: 148 RHSLQRLAALQLCTNACLCWYPLGRINDTTPL 179
>VIF_BIV06 (P19562) Virion infectivity factor (Q protein)| Length = 198 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 374 RHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPL 279 RH L R L + L W P G++ TTPL Sbjct: 148 RHSLQRLAALQLCTNACLCWYPLGRINDTTPL 179
>FL1_TOBAC (Q40504) Floricaula/leafy homolog 1 (NFL1)| Length = 413 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = -1 Query: 326 MLDWDPKGKLGPTTPLXDLVTIHPPKXEDXLRPPALIEV*TPSSAS 189 + WDP+G + P T L + PP PP ++ P SA+ Sbjct: 10 LFKWDPRGAMPPPTRLLEAAVAPPP-------PPPVLPPPQPLSAA 48
>PRIO_CEBAP (P40249) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 252 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNLYPPQG-GGWGQPHGGGW 64
>PRIO_CALJA (P40247) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 252 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQG-GGWGQPHGGGW 64
>PRIO_ATEPA (P51446) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 252 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 41 QGSPGGNRYPPQG-GGWGQPHGGGW 64
>PRIO_ATEGE (P40246) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 232 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +2 Query: 215 QSKPGGAXRPPXSXGGW*RGXAGGW 289 Q PGG PP GGW + GGW Sbjct: 34 QGSPGGNRYPPQG-GGWGQPHGGGW 57 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,295,528 Number of Sequences: 219361 Number of extensions: 877902 Number of successful extensions: 2070 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 1865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2020 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
