ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11g17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein ... 381 e-102
2gb|AF479033.1| Triticum aestivum 40S ribosomal protein mRNA, par... 272 8e-70
3gb|AY107461.1| Zea mays PCO108959 mRNA sequence 125 1e-25
4ref|XM_463024.1| Oryza sativa (japonica cultivar-group), OSJNBa0... 121 2e-24
5dbj|AK099146.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
6dbj|AK061051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 7e-18
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
9gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome... 100 7e-18
10ref|NM_122944.2| Arabidopsis thaliana structural constituent of ... 98 3e-17
11gb|AY098949.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, comp... 98 3e-17
12gb|AY058057.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, comp... 98 3e-17
13gb|AY084320.1| Arabidopsis thaliana clone 10394 mRNA, complete s... 98 3e-17
14dbj|AB091077.1| Zinnia elegans ZeRPS3 mRNA for putative ribosoma... 98 3e-17
15gb|AY106013.1| Zea mays PCO066457 mRNA sequence 86 1e-13
16dbj|AB015477.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 78 2e-11
17gb|DQ241842.1| Solanum tuberosum clone 182H03 unknown mRNA 74 4e-10
18ref|XM_479106.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
19dbj|AK066905.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
20gb|BT012908.1| Lycopersicon esculentum clone 114026F, mRNA sequence 66 9e-08
21gb|DQ294256.1| Solanum tuberosum clone 084G12 40S ribosomal prot... 66 9e-08
22dbj|AP004944.1| Lotus japonicus genomic DNA, chromosome 1, clone... 64 4e-07
23emb|BX831845.1|CNS0A14G Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
24ref|NM_128718.3| Arabidopsis thaliana structural constituent of ... 54 4e-04
25gb|AY091208.1| Arabidopsis thaliana putative 40S ribosomal prote... 54 4e-04
26gb|AY046041.1| Arabidopsis thaliana putative 40S ribosomal prote... 54 4e-04
27gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map ... 54 4e-04
28gb|AY081517.1| Arabidopsis thaliana 40S ribosomal protein; conta... 54 4e-04
29gb|AY054622.1| Arabidopsis thaliana 40S ribosomal protein (At2g3... 54 4e-04
30gb|AY052749.1| Arabidopsis thaliana At2g31610/T9H9.13 mRNA, comp... 54 4e-04
31gb|AF378887.1|AF378887 Arabidopsis thaliana At2g31610/T9H9.13 mR... 54 4e-04
32emb|BX819975.1|CNS0A8H0 Arabidopsis thaliana Full-length cDNA Co... 54 4e-04
33ref|XM_754010.1| Ustilago maydis 521 hypothetical protein (UM029... 50 0.006
34gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb002... 50 0.006
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
36dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
37dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
38ref|XM_566546.1| Cryptococcus neoformans var. neoformans JEC21 r... 48 0.022
39emb|BX820098.1|CNS0A8HS Arabidopsis thaliana Full-length cDNA Co... 48 0.022
40ref|XM_745219.1| Aspergillus fumigatus Af293 40s ribosomal prote... 46 0.088
41gb|BC061265.1| Xenopus tropicalis ribosomal protein S3, mRNA (cD... 44 0.35
42emb|V01441.1|XLRIB4 Fragment of Xenopus laevis mRNA for ribosoma... 44 0.35
43gb|AF402810.1| Ictalurus punctatus 40S ribosomal protein S3 mRNA... 44 0.35
44ref|NM_203788.1| Xenopus tropicalis ribosomal protein S3 (MGC756... 44 0.35
45emb|Z34529.1|XLRIBS1R X.laevis rpS1b mRNA for ribosomal protein S1 44 0.35
46emb|CR848247.2| Xenopus tropicalis finished cDNA, clone TTpA010a01 44 0.35
47gb|DQ206605.1| Monosiga brevicollis isolate TOA26 ribosomal prot... 44 0.35
48gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.4
49emb|AL513332.9| Human DNA sequence from clone RP11-58B8 on chrom... 40 5.4
50emb|AL356954.16| Human DNA sequence from clone RP11-520F24 on ch... 40 5.4
51gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
52emb|BX842627.1| Neurospora crassa DNA linkage group I BAC clone ... 40 5.4
53gb|AC116926.1| Genomic sequence for Oryza sativa (japonica culti... 40 5.4
54dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
55dbj|D38596.1|RICRPS3A Oryza sativa mRNA, partial homologous to ... 40 5.4
56emb|CR555302.7| Zebrafish DNA sequence from clone CH211-212C19 i... 40 5.4
57gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
58emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, ... 40 5.4 
>gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein S3 mRNA, complete
           cds
          Length = 1004

 Score =  381 bits (192), Expect = e-102
 Identities = 272/300 (90%), Gaps = 2/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 107 aggtaaccaaacgttgcatagcccac--ttgtcacaaggataggaaacaagctaggacca 164
           |||||||||| ||||||||||||| |  || ||||| |||||| |||| ||||| |||||
Sbjct: 873 aggtaaccaagcgttgcatagccctcgcttatcacagggatagaaaactagctacgacca 814

                                                                       
Query: 165 aaatgatgtgccgtttcatggtctgcttgcactactgggagtttagacctcaatcaaagc 224
           |||||||||| ||||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct: 813 aaatgatgtgacgtttcatggtctgcttgctctactgggactttagacctcaaccaaagc 754

                                                                       
Query: 225 cggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcagggg 284
           |||||||||||| |||| ||||| |||||| ||||||||||||||||||||| |||| ||
Sbjct: 753 cggggggcgcagctcgttctcctccttcggggggtggatggtgacgaggtcaggcagcgg 694

                                                                       
Query: 285 ggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatacc 344
            |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 693 agtggtagggccaagcttgcccttggggtcccagtcaagcataatcttcaccttgatacc 634

                                                                       
Query: 345 aagaacgccctgtctganaagaacgtgtctaacanctgcatcaatgtactcattgacggg 404
           ||||||||||||||||| ||||||||| |||||  | |||||||||||||| ||||||||
Sbjct: 633 aagaacgccctgtctgagaagaacgtgcctaactgcagcatcaatgtactcgttgacggg 574



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 38  aaacttagtttaaacgaaattaaaatggcagcat 71
           ||||||||||||||||||||||| || |||||||
Sbjct: 941 aaacttagtttaaacgaaattaacatagcagcat 908



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 71  taacatanaagcattacacataaacttttgt 101
           |||||||  ||||||||||| ||||||||||
Sbjct: 921 taacatagcagcattacacagaaacttttgt 891
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>gb|AF479033.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds
          Length = 240

 Score =  272 bits (137), Expect = 8e-70
 Identities = 181/198 (91%)
 Strand = Plus / Minus

                                                                       
Query: 207 ttagacctcaatcaaagccggggggcgcagntcgtcctcctncttcggngggtggatggt 266
           ||||||||||| ||||||||| |||||||| |||||||||| |||||| |||||||||||
Sbjct: 240 ttagacctcaaccaaagccggtgggcgcagctcgtcctcctccttcggggggtggatggt 181

                                                                       
Query: 267 gacgaggtcangcaggggggtggtagggccaagtttgcccttggggtcccagtcaagcat 326
           ||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 180 gacaaggtcaggcagcggggtggtagggccaagcttgcccttggggtcccagtcaagcat 121

                                                                       
Query: 327 aatcttnaccttgataccaagaacgccctgtctganaagaacgtgtctaacanctgcatc 386
           |||||| |||||||||||||||||||||||||||| ||||||||| |||||  | |||||
Sbjct: 120 aatcttcaccttgataccaagaacgccctgtctgagaagaacgtgcctaactgcagcatc 61

                             
Query: 387 aatgtactcattgacggg 404
           ||||||||| || |||||
Sbjct: 60  aatgtactcgttaacggg 43
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>gb|AY107461.1| Zea mays PCO108959 mRNA sequence
          Length = 794

 Score =  125 bits (63), Expect = 1e-25
 Identities = 143/172 (83%)
 Strand = Plus / Minus

                                                                       
Query: 224 ccggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcaggg 283
           |||| |||||| | |||||||| | |||||| | ||||||||| || |||||  | || |
Sbjct: 478 ccggagggcgcggctcgtcctcgtccttcggggtgtggatggtcaccaggtccggaagag 419

                                                                       
Query: 284 gggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatac 343
           | ||| | |||||||  |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 418 gagtgatcgggccaaccttgcccttcgggtcccagtcaagcatgatcttcaccttgatac 359

                                                               
Query: 344 caagaacgccctgtctganaagaacgtgtctaacanctgcatcaatgtactc 395
           | ||||| |||||||||| |||||||||||| ||| | |  |||||||||||
Sbjct: 358 cgagaacaccctgtctgagaagaacgtgtctcacagccgagtcaatgtactc 307
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>ref|XM_463024.1| Oryza sativa (japonica cultivar-group), OSJNBa0008D12.4 mRNA
          Length = 1112

 Score =  121 bits (61), Expect = 2e-24
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                       
Query: 224 ccggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcaggg 283
           |||| |||||||| || ||||||| ||| || |  |||||||| || || ||  |||| |
Sbjct: 780 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 721

                                                                       
Query: 284 gggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatac 343
           ||||||| |||||||  |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 720 gggtggtcgggccaaccttgcccttggggtcccagtcgagcatgatcttcaccttgatgc 661

                                                                     
Query: 344 caagaacgccctgtctganaagaacgtgtctaacanctgcatcaatgtactcattgac 401
           ||||||| |||||||| |  || |||||||| ||| | |  |||||||||||||||||
Sbjct: 660 caagaacaccctgtctcaggagcacgtgtctcacagccgagtcaatgtactcattgac 603
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>dbj|AK099146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061B16, full
           insert sequence
          Length = 1054

 Score =  121 bits (61), Expect = 2e-24
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                       
Query: 224 ccggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcaggg 283
           |||| |||||||| || ||||||| ||| || |  |||||||| || || ||  |||| |
Sbjct: 790 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 731

                                                                       
Query: 284 gggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatac 343
           ||||||| |||||||  |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 730 gggtggtcgggccaaccttgcccttggggtcccagtcgagcatgatcttcaccttgatgc 671

                                                                     
Query: 344 caagaacgccctgtctganaagaacgtgtctaacanctgcatcaatgtactcattgac 401
           ||||||| |||||||| |  || |||||||| ||| | |  |||||||||||||||||
Sbjct: 670 caagaacaccctgtctcaggagcacgtgtctcacagccgagtcaatgtactcattgac 613
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>dbj|AK061051.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G04, full
           insert sequence
          Length = 1084

 Score =  121 bits (61), Expect = 2e-24
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                       
Query: 224 ccggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcaggg 283
           |||| |||||||| || ||||||| ||| || |  |||||||| || || ||  |||| |
Sbjct: 792 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 733

                                                                       
Query: 284 gggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatac 343
           ||||||| |||||||  |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 732 gggtggtcgggccaaccttgcccttggggtcccagtcgagcatgatcttcaccttgatgc 673

                                                                     
Query: 344 caagaacgccctgtctganaagaacgtgtctaacanctgcatcaatgtactcattgac 401
           ||||||| |||||||| |  || |||||||| ||| | |  |||||||||||||||||
Sbjct: 672 caagaacaccctgtctcaggagcacgtgtctcacagccgagtcaatgtactcattgac 615
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                            
Query: 224      ccggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcaggg 283
                |||| |||||||| || ||||||| ||| || |  |||||||| || || ||  |||| |
Sbjct: 20905760 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 20905819

                                                                            
Query: 284      gggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatac 343
                ||||||| |||||||  |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 20905820 gggtggtcgggccaaccttgcccttggggtcccagtcgagcatgatcttcaccttgatgc 20905879

                             
Query: 344      caagaacgccctg 356
                ||||||| |||||
Sbjct: 20905880 caagaacaccctg 20905892
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                            
Query: 224      ccggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcaggg 283
                |||| |||||||| || ||||||| ||| || |  |||||||| || || ||  |||| |
Sbjct: 20898789 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 20898848

                                                                            
Query: 284      gggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatac 343
                ||||||| |||||||  |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 20898849 gggtggtcgggccaaccttgcccttggggtcccagtcgagcatgatcttcaccttgatgc 20898908

                             
Query: 344      caagaacgccctg 356
                ||||||| |||||
Sbjct: 20898909 caagaacaccctg 20898921
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>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12
             map MAP_LOC, complete sequence
          Length = 167323

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 111/133 (83%)
 Strand = Plus / Minus

                                                                         
Query: 224   ccggggggcgcagntcgtcctcctncttcggngggtggatggtgacgaggtcangcaggg 283
             |||| |||||||| || ||||||| ||| || |  |||||||| || || ||  |||| |
Sbjct: 17163 ccggagggcgcagctcctcctcctccttgggagcatggatggttacaagatccggcagag 17104

                                                                         
Query: 284   gggtggtagggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgatac 343
             ||||||| |||||||  |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct: 17103 gggtggtcgggccaaccttgcccttggggtcccagtcgagcatgatcttcaccttgatgc 17044

                          
Query: 344   caagaacgccctg 356
             ||||||| |||||
Sbjct: 17043 caagaacaccctg 17031
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>ref|NM_122944.2| Arabidopsis thaliana structural constituent of ribosome AT5G35530
           mRNA, complete cds
          Length = 1028

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtc 358
           |||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||||
Sbjct: 657 gtttgcccttggggtcccagtcaagcatgatcttcaccttgagaccaagcacaccctgtc 598

                                             
Query: 359 tganaagaacgtgtctaacanctgcatcaatgta 392
           | | |||||| || |||||  | |||||||||||
Sbjct: 597 taagaagaacatgcctaactgcagcatcaatgta 564
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>gb|AY098949.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, complete cds
          Length = 747

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtc 358
           |||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||||
Sbjct: 592 gtttgcccttggggtcccagtcaagcatgatcttcaccttgagaccaagcacaccctgtc 533

                                             
Query: 359 tganaagaacgtgtctaacanctgcatcaatgta 392
           | | |||||| || |||||  | |||||||||||
Sbjct: 532 taagaagaacatgcctaactgcagcatcaatgta 499
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>gb|AY058057.1| Arabidopsis thaliana AT5g35530/MOK9_14 mRNA, complete cds
          Length = 955

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtc 358
           |||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||||
Sbjct: 656 gtttgcccttggggtcccagtcaagcatgatcttcaccttgagaccaagcacaccctgtc 597

                                             
Query: 359 tganaagaacgtgtctaacanctgcatcaatgta 392
           | | |||||| || |||||  | |||||||||||
Sbjct: 596 taagaagaacatgcctaactgcagcatcaatgta 563
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>gb|AY084320.1| Arabidopsis thaliana clone 10394 mRNA, complete sequence
          Length = 985

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtc 358
           |||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||||
Sbjct: 657 gtttgcccttggggtcccagtcaagcatgatcttcaccttgagaccaagcacaccctgtc 598

                                             
Query: 359 tganaagaacgtgtctaacanctgcatcaatgta 392
           | | |||||| || |||||  | |||||||||||
Sbjct: 597 taagaagaacatgcctaactgcagcatcaatgta 564
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>dbj|AB091077.1| Zinnia elegans ZeRPS3 mRNA for putative ribosomal protein S3,
           partial cds
          Length = 509

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 292 gggccaagtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacg 351
           ||||||||||||||  | ||||||||||||||||| ||||| ||||||||||||||||| 
Sbjct: 172 gggccaagtttgccagtcgggtcccagtcaagcatgatcttaaccttgataccaagaaca 113

                                  
Query: 352 ccctgtctganaagaacgtgtct 374
           |||||||| | ||| ||||||||
Sbjct: 112 ccctgtctaagaagcacgtgtct 90
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>gb|AY106013.1| Zea mays PCO066457 mRNA sequence
          Length = 819

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 301 ttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtctg 360
           |||||||| || |||||||| ||||||||||| |||||||||||||| || |||||||| 
Sbjct: 643 ttgccctttggatcccagtccagcataatcttaaccttgataccaagcacaccctgtctc 584

                                           
Query: 361 anaagaacgtgtctaacanctgcatcaatgta 392
           |  ||||| ||||| ||| ||| |||||||||
Sbjct: 583 aatagaacatgtctcacagctgaatcaatgta 552
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>dbj|AB015477.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK9
          Length = 87459

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                       
Query: 299   gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctg 356
             |||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||
Sbjct: 49326 gtttgcccttggggtcccagtcaagcatgatcttcaccttgagaccaagcacaccctg 49383
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>gb|DQ241842.1| Solanum tuberosum clone 182H03 unknown mRNA
          Length = 938

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtc 358
           |||| ||||| || |||||||||||||| ||||| || ||||||||||| |||||||| |
Sbjct: 628 gtttacccttaggatcccagtcaagcatgatcttgactttgataccaagcacgccctgcc 569

                                             
Query: 359 tganaagaacgtgtctaacanctgcatcaatgta 392
           | |  || || || |||||| |||||||||||||
Sbjct: 568 taagtagcacatgcctaacagctgcatcaatgta 535
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>ref|XM_479106.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 926

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 301 ttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtctg 360
           |||||||| || ||||| |||||||||||||| ||||| ||||| || || |||||||| 
Sbjct: 678 ttgcccttcggatcccaatcaagcataatcttgaccttaatacccagcacaccctgtctc 619

                             
Query: 361 anaagaacgtgtctaaca 378
           | |||||| |||||||||
Sbjct: 618 agaagaacatgtctaaca 601
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>dbj|AK066905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092O21, full
           insert sequence
          Length = 926

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 301 ttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtctg 360
           |||||||| || ||||| |||||||||||||| ||||| ||||| || || |||||||| 
Sbjct: 678 ttgcccttcggatcccaatcaagcataatcttgaccttaatacccagcacaccctgtctc 619

                             
Query: 361 anaagaacgtgtctaaca 378
           | |||||| |||||||||
Sbjct: 618 agaagaacatgtctaaca 601
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>gb|BT012908.1| Lycopersicon esculentum clone 114026F, mRNA sequence
          Length = 999

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtc 358
           |||| ||||| || |||||||||||||| ||||| || ||||||||||| || ||||| |
Sbjct: 678 gtttacccttaggatcccagtcaagcatgatcttgactttgataccaagcacaccctgcc 619

                                             
Query: 359 tganaagaacgtgtctaacanctgcatcaatgta 392
           | |  ||||| || || ||| |||||||||||||
Sbjct: 618 ttagtagaacatgccttacagctgcatcaatgta 585
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>gb|DQ294256.1| Solanum tuberosum clone 084G12 40S ribosomal protein-like protein
           mRNA, complete cds
          Length = 968

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttgataccaagaacgccctgtc 358
           |||| ||||| || |||||||||||||| ||||| || ||||||||||| |||||||| |
Sbjct: 631 gtttacccttaggatcccagtcaagcatgatcttgactttgataccaagcacgccctgcc 572

                                         
Query: 359 tganaagaacgtgtctaacanctgcatcaa 388
           | |  || || || |||||| |||||||||
Sbjct: 571 taagtagcacatgcctaacagctgcatcaa 542
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>dbj|AP004944.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43B20, TM0117a,
             complete sequence
          Length = 33359

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                
Query: 313   tcccagtcaagcataatcttnaccttgataccaag 347
             |||||||||||||||||||| ||||||||||||||
Sbjct: 28359 tcccagtcaagcataatcttaaccttgataccaag 28393
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>emb|BX831845.1|CNS0A14G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH33ZB11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 972

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 299 gtttgcccttggggtcccagtcaagcataatcttnaccttga 340
           ||||||||||||||||||||| |||||| ||||| |||||||
Sbjct: 642 gtttgcccttggggtcccagtaaagcatgatcttcaccttga 601
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>ref|NM_128718.3| Arabidopsis thaliana structural constituent of ribosome AT2G31610
           mRNA, complete cds
          Length = 1077

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 662 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 621
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>gb|AY091208.1| Arabidopsis thaliana putative 40S ribosomal protein (At2g31610)
           mRNA, complete cds
          Length = 784

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 591 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 550
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>gb|AY046041.1| Arabidopsis thaliana putative 40S ribosomal protein; contains
           C-terminal domain (At2g31610) mRNA, complete cds
          Length = 987

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 662 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 621
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>gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map nga361, complete
             sequence
          Length = 79734

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 300   tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
             ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 40251 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 40210
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>gb|AY081517.1| Arabidopsis thaliana 40S ribosomal protein; contains C-terminal
           domain (At2g31610) mRNA, complete cds
          Length = 863

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 591 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 550
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>gb|AY054622.1| Arabidopsis thaliana 40S ribosomal protein (At2g31610; T9H9.13)
           mRNA, complete cds
          Length = 992

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 662 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 621
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>gb|AY052749.1| Arabidopsis thaliana At2g31610/T9H9.13 mRNA, complete cds
          Length = 753

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 591 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 550
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>gb|AF378887.1|AF378887 Arabidopsis thaliana At2g31610/T9H9.13 mRNA, complete cds
          Length = 956

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 662 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 621
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>emb|BX819975.1|CNS0A8H0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS55ZF11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1056

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 300 tttgcccttggggtcccagtcaagcataatcttnaccttgat 341
           ||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 640 tttgcccgtagggtcccagtcaagcatgatcttcaccttgat 599
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>ref|XM_754010.1| Ustilago maydis 521 hypothetical protein (UM02956.1) partial mRNA
          Length = 720

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 309 ggggtcccagtcaagcataatcttnaccttgataccaagaacgccctg 356
           |||||||||| |  |||| ||||| ||||||||||||||||| |||||
Sbjct: 552 ggggtcccagccctgcatgatcttgaccttgataccaagaacaccctg 505
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>gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence
          Length = 129838

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 301    ttgcccttggggtcccagtcaagcataatcttnaccttgatacc 344
              |||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 122878 ttgcccttcggatcccaatcaagcataatcttgaccttaatacc 122835
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 301      ttgcccttggggtcccagtcaagcataatcttnaccttgatacc 344
                |||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 24966275 ttgcccttcggatcccaatcaagcataatcttgaccttaatacc 24966318
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>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0072I06
          Length = 162411

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 301    ttgcccttggggtcccagtcaagcataatcttnaccttgatacc 344
              |||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 149907 ttgcccttcggatcccaatcaagcataatcttgaccttaatacc 149950
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>dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0018L13
          Length = 131155

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 301  ttgcccttggggtcccagtcaagcataatcttnaccttgatacc 344
            |||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 6955 ttgcccttcggatcccaatcaagcataatcttgaccttaatacc 6998
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>ref|XM_566546.1| Cryptococcus neoformans var. neoformans JEC21 ribosomal protein S3
           (CNA01060) partial mRNA
          Length = 901

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 324 cataatcttnaccttgataccaagaacgccctgtctganaagaacgtgtc 373
           ||||||||| ||||||||||| || || ||||||| ||  ||||||||||
Sbjct: 621 cataatcttgaccttgataccgagcacaccctgtcggaggagaacgtgtc 572
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>emb|BX820098.1|CNS0A8HS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS73ZG08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1228

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 311 ggtcccagtcaagcataatcttnaccttgat 341
           |||||||||||||||| ||||| ||||||||
Sbjct: 916 ggtcccagtcaagcatgatcttcaccttgat 886
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>ref|XM_745219.1| Aspergillus fumigatus Af293 40s ribosomal protein S3 (Afu1g05630)
           partial mRNA
          Length = 801

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 323 gcataatcttnaccttgataccaagaacgccctg 356
           |||| ||||| ||||||||||||||||| |||||
Sbjct: 577 gcatgatcttgaccttgataccaagaacaccctg 544
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>gb|BC061265.1| Xenopus tropicalis ribosomal protein S3, mRNA (cDNA clone MGC:75699
           IMAGE:5380544), complete cds
          Length = 882

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 321 aagcataatcttnaccttgataccaagaacgccctgtctga 361
           |||||||||||| |||||||| ||||| || ||||| ||||
Sbjct: 605 aagcataatctttaccttgattccaaggacaccctgcctga 565
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>emb|V01441.1|XLRIB4 Fragment of Xenopus laevis mRNA for ribosomal protein S1
          Length = 382

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 321 aagcataatcttnaccttgataccaagaacgccctgtctga 361
           |||||||||||| |||||||| || ||||| ||||| ||||
Sbjct: 190 aagcataatctttaccttgattcccagaacaccctgcctga 150
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>gb|AF402810.1| Ictalurus punctatus 40S ribosomal protein S3 mRNA, complete cds
          Length = 799

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 308 tggggtcccagtcaagcataatcttnaccttgatacc 344
           |||||||||||  |||||| ||||| |||||||||||
Sbjct: 588 tggggtcccagggaagcatgatcttaaccttgatacc 552
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>ref|NM_203788.1| Xenopus tropicalis ribosomal protein S3 (MGC75699), mRNA
          Length = 882

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 321 aagcataatcttnaccttgataccaagaacgccctgtctga 361
           |||||||||||| |||||||| ||||| || ||||| ||||
Sbjct: 605 aagcataatctttaccttgattccaaggacaccctgcctga 565
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>emb|Z34529.1|XLRIBS1R X.laevis rpS1b mRNA for ribosomal protein S1
          Length = 842

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 321 aagcataatcttnaccttgataccaagaacgccctgtctga 361
           |||||||||||| |||||||| || ||||| ||||| ||||
Sbjct: 596 aagcataatctttaccttgattcccagaacaccctgcctga 556
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>emb|CR848247.2| Xenopus tropicalis finished cDNA, clone TTpA010a01
          Length = 892

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 321 aagcataatcttnaccttgataccaagaacgccctgtctga 361
           |||||||||||| |||||||| ||||| || ||||| ||||
Sbjct: 576 aagcataatctttaccttgattccaaggacaccctgcctga 536
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>gb|DQ206605.1| Monosiga brevicollis isolate TOA26 ribosomal protein 3 small
           subunit mRNA, partial cds
          Length = 572

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 322 agcataatcttnaccttgataccaa 346
           ||||||||||| |||||||||||||
Sbjct: 488 agcataatcttgaccttgataccaa 464
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
              sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 39/46 (84%)
 Strand = Plus / Minus

                                                            
Query: 328    atcttnaccttgataccaagaacgccctgtctganaagaacgtgtc 373
              ||||| ||||||||||| || || ||||||| ||  ||||||||||
Sbjct: 291022 atcttgaccttgataccgagcacaccctgtcggaggagaacgtgtc 290977
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>emb|AL513332.9| Human DNA sequence from clone RP11-58B8 on chromosome 9, complete
             sequence
          Length = 124531

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    aaattaaaatggcagcataacata 77
             |||||||||||| |||||||||||
Sbjct: 24006 aaattaaaatggaagcataacata 23983
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>emb|AL356954.16| Human DNA sequence from clone RP11-520F24 on chromosome 13 Contains an
              HNRPA1 (heterogenous nuclear ribonucleoprotein A1)
              pseudogene, an ELL-related RNA polymerase II, elongation
              factor (ELL2) pseudogene and a ribosomal protein L37
              (RPL37) pseudogene, complete sequence
          Length = 159235

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 54     aaattaaaatggcagcataacata 77
              |||||||||||| |||||||||||
Sbjct: 146748 aaattaaaatggaagcataacata 146725
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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
             complete sequence
          Length = 131922

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   aggaaacaagctaggaccaa 165
             ||||||||||||||||||||
Sbjct: 85738 aggaaacaagctaggaccaa 85719
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>emb|BX842627.1| Neurospora crassa DNA linkage group I BAC clone B8J22
          Length = 75335

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  ataggaaacaagctaggacc 163
            ||||||||||||||||||||
Sbjct: 7696 ataggaaacaagctaggacc 7677
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>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1341F06, from chromosome 10, complete
             sequence
          Length = 102520

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   aggaaacaagctaggaccaa 165
             ||||||||||||||||||||
Sbjct: 88705 aggaaacaagctaggaccaa 88724
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 146      aggaaacaagctaggaccaa 165
                ||||||||||||||||||||
Sbjct: 11277750 aggaaacaagctaggaccaa 11277731
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>dbj|D38596.1|RICRPS3A Oryza sativa mRNA, partial  homologous to ribosomal protein S3
           coding sequence
          Length = 368

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 305 ccttggggtcccagtcaagcataatctt 332
           |||||||||||||||| ||||| |||||
Sbjct: 346 ccttggggtcccagtcgagcatgatctt 319
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>emb|CR555302.7| Zebrafish DNA sequence from clone CH211-212C19 in linkage group 10,
              complete sequence
          Length = 202469

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     attaaaatggcagcataaca 75
              ||||||||||||||||||||
Sbjct: 151367 attaaaatggcagcataaca 151386
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 146      aggaaacaagctaggaccaa 165
                ||||||||||||||||||||
Sbjct: 11284190 aggaaacaagctaggaccaa 11284171
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>emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, complete sequence
          Length = 187939

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    attaaaatggcagcataaca 75
             ||||||||||||||||||||
Sbjct: 56077 attaaaatggcagcataaca 56096


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,411,918
Number of Sequences: 3902068
Number of extensions: 2411918
Number of successful extensions: 39727
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39571
Number of HSP's gapped (non-prelim): 155
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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