>gb|BT018968.1| Zea mays clone Contig370.F mRNA sequence
          Length = 1387

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 2    ttcctttgctcttctcaacagccttcat 29
            |||| |||||||||||||||||||||||
Sbjct: 1091 ttcccttgctcttctcaacagccttcat 1064

>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2,
             complete sequence
          Length = 180976

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     cttcctttgctcttctcaaca 21
             |||||||||||||||||||||
Sbjct: 56957 cttcctttgctcttctcaaca 56937

>gb|U12683.1|XLU12683 Xenopus laevis integrin alpha5 subunit mRNA, complete cds
          Length = 5159

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 9    gctcttctcaacagccttcattct 32
            |||| |||||||||||||||||||
Sbjct: 1358 gctcctctcaacagccttcattct 1381

>gb|U12646.1|XLU12646 Xenopus laevis integrin alpha5tr subunit truncated cytoplasmic
           variant mRNA, partial cds
          Length = 2030

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   gctcttctcaacagccttcattct 32
           |||| |||||||||||||||||||
Sbjct: 93  gctcctctcaacagccttcattct 116

>emb|AL672091.4| Mouse DNA sequence from clone RP23-185L10 on chromosome X, complete
              sequence
          Length = 206291

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     tcttctcaacagccttcatt 30
              ||||||||||||||||||||
Sbjct: 131152 tcttctcaacagccttcatt 131171

>ref|XM_418667.1| PREDICTED: Gallus gallus similar to epsilon-sarcoglycan
           (LOC420567), mRNA
          Length = 1630

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 11  tcttctcaacagccttcattctg 33
           |||||||||||||||| ||||||
Sbjct: 256 tcttctcaacagcctttattctg 234

>emb|AL450339.5| Human DNA sequence from clone RP11-25C17 on chromosome 6 Contains part
             of a novel gene (contains FLJ31738 and KIAA1209), complete
             sequence
          Length = 63892

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 10    ctcttctcaacagccttcattct 32
             |||||||||||||||||| ||||
Sbjct: 44917 ctcttctcaacagccttctttct 44895

>emb|AL162376.15| Human DNA sequence from clone RP11-309J13 on chromosome 13, complete
             sequence
          Length = 191606

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 2     ttcctttgctcttctcaacagcc 24
             |||||||||||||| ||||||||
Sbjct: 95118 ttcctttgctcttcacaacagcc 95096

>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      cttcctttgctcttctcaa 19
              |||||||||||||||||||
Sbjct: 159957 cttcctttgctcttctcaa 159975

>emb|BX950342.2| Gallus gallus finished cDNA, clone ChEST169e19
          Length = 1914

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 11  tcttctcaacagccttcattctg 33
           |||||||||||||||| ||||||
Sbjct: 260 tcttctcaacagcctttattctg 238

>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
             sequences
          Length = 162128

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     cttcctttgctcttctcaa 19
             |||||||||||||||||||
Sbjct: 59990 cttcctttgctcttctcaa 59972

>gb|AC171211.1| Mus musculus BAC clone RP23-34I14 from chromosome 16, complete sequence
          Length = 230462

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      cttcctttgctcttctcaa 19
              |||||||||||||||||||
Sbjct: 189588 cttcctttgctcttctcaa 189570

>gb|AC104270.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1037_G10,
             complete sequence
          Length = 181130

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 1     cttcctttgctcttctcaacag 22
             ||||||||| ||||||||||||
Sbjct: 82401 cttcctttgttcttctcaacag 82422

>ref|XM_414784.1| PREDICTED: Gallus gallus winged helix protein CWH-5 (LOC395463), mRNA
          Length = 3523

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 12   cttctcaacagccttcat 29
            ||||||||||||||||||
Sbjct: 2573 cttctcaacagccttcat 2590

>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     cttctcaacagccttcat 29
              ||||||||||||||||||
Sbjct: 697384 cttctcaacagccttcat 697401

>gb|AC147788.1| Latimeria menadoensis clone VMRC4-19C10, complete sequence
          Length = 168364

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ttcctttgctcttctcaa 19
             ||||||||||||||||||
Sbjct: 59847 ttcctttgctcttctcaa 59864

>gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome 5, complete sequence
          Length = 168197

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     ctttgctcttctcaacag 22
             ||||||||||||||||||
Sbjct: 54218 ctttgctcttctcaacag 54201

>gb|AC007033.3| Homo sapiens BAC clone RP11-28D14 from 7, complete sequence
          Length = 76385

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    tcttctcaacagccttca 28
             ||||||||||||||||||
Sbjct: 55892 tcttctcaacagccttca 55875

>emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in linkage group 3,
              complete sequence
          Length = 171843

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 16     tcaacagccttcattctg 33
              ||||||||||||||||||
Sbjct: 169883 tcaacagccttcattctg 169866

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 1       cttcctttgctcttctcaacag 22
               ||||||||| ||||||||||||
Sbjct: 8870476 cttcctttgttcttctcaacag 8870497

>gb|AC105186.14| Homo sapiens chromosome 8, clone CTD-2323A1, complete sequence
          Length = 114669

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     ttgctcttctcaacagcc 24
             ||||||||||||||||||
Sbjct: 76590 ttgctcttctcaacagcc 76573

>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     cttctcaacagccttcat 29
              ||||||||||||||||||
Sbjct: 694675 cttctcaacagccttcat 694692

>dbj|AK071717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109O07, full
            insert sequence
          Length = 3144

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 1    cttcctttgctcttctcaacag 22
            ||||||||| ||||||||||||
Sbjct: 1119 cttcctttgttcttctcaacag 1098

>dbj|AP004425.1| Anoplogaster cornuta mitochondrial DNA, complete genome
          Length = 16511

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 12    cttctcaacagccttcattctg 33
             ||||||| ||||||||||||||
Sbjct: 10071 cttctcatcagccttcattctg 10092

>emb|AL845490.8| Mouse DNA sequence from clone RP23-259M16 on chromosome 2, complete
             sequence
          Length = 200794

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     ttcctttgctcttctcaa 19
             ||||||||||||||||||
Sbjct: 23508 ttcctttgctcttctcaa 23491

>gb|J05546.1|CHTPOLSIG Chlamydia trachomatis RNA polymerase (DNA-dependent) sigma subunit
            gene, complete cds
          Length = 1981

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   cttctcaacagccttcat 29
            ||||||||||||||||||
Sbjct: 1170 cttctcaacagccttcat 1153


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 333,494
Number of Sequences: 3902068
Number of extensions: 333494
Number of successful extensions: 90857
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90791
Number of HSP's gapped (non-prelim): 66
length of query: 33
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 13
effective length of database: 17,155,003,908
effective search space: 223015050804
effective search space used: 223015050804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)