ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_585828.2| PREDICTED: Bos taurus hypothetical LOC508965 (L... 36 8.0
2gb|BC116031.1| Bos taurus cDNA clone MGC:139028 IMAGE:8095211, c... 36 8.0
3dbj|AP000562.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 36 8.0
4dbj|AP002761.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 36 8.0

>ref|XM_585828.2| PREDICTED: Bos taurus hypothetical LOC508965 (LOC508965), mRNA
          Length = 1491

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 38   ccctgggggagcgcccag 55
            ||||||||||||||||||
Sbjct: 1095 ccctgggggagcgcccag 1078



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>gb|BC116031.1| Bos taurus cDNA clone MGC:139028 IMAGE:8095211, complete cds
          Length = 1816

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 38   ccctgggggagcgcccag 55
            ||||||||||||||||||
Sbjct: 1125 ccctgggggagcgcccag 1108



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>dbj|AP000562.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-40O16, complete
             sequence
          Length = 94000

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 38    ccctgggggagcgcccag 55
             ||||||||||||||||||
Sbjct: 31911 ccctgggggagcgcccag 31928



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>dbj|AP002761.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-800A3, complete
              sequence
          Length = 196988

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 38     ccctgggggagcgcccag 55
              ||||||||||||||||||
Sbjct: 160090 ccctgggggagcgcccag 160107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,989
Number of Sequences: 3902068
Number of extensions: 187989
Number of successful extensions: 6168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6164
Number of HSP's gapped (non-prelim): 4
length of query: 57
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 36
effective length of database: 17,151,101,840
effective search space: 617439666240
effective search space used: 617439666240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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