ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11f16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192949.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 408 Score = 452 bits (228), Expect = e-124 Identities = 288/308 (93%) Strand = Plus / Minus Query: 221 aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 280 ||||||||||||||||||||||||||||| |||||| |||| || ||||||||||||| Sbjct: 371 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 312 Query: 281 acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 340 | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 311 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 252 Query: 341 gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 400 | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| Sbjct: 251 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 192 Query: 401 gtgccccccgtcaccagcaccagctcaccgttgcagtacaccttcgcgtcctcgaagatc 460 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 191 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 132 Query: 461 tccgggtgcagccccttcttccgcatcgagcacctcatcctctgggaggggacgagggag 520 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 131 tccgggtgcagccccttcttccgcatcgagcaccgcatcctctgggaggggacgagggag 72 Query: 521 cggagggt 528 |||||||| Sbjct: 71 cggagggt 64
>dbj|AK062051.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B04, full insert sequence Length = 748 Score = 452 bits (228), Expect = e-124 Identities = 288/308 (93%) Strand = Plus / Minus Query: 221 aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 280 ||||||||||||||||||||||||||||| |||||| |||| || ||||||||||||| Sbjct: 455 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 396 Query: 281 acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 340 | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 395 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 336 Query: 341 gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 400 | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| Sbjct: 335 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 276 Query: 401 gtgccccccgtcaccagcaccagctcaccgttgcagtacaccttcgcgtcctcgaagatc 460 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 275 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 216 Query: 461 tccgggtgcagccccttcttccgcatcgagcacctcatcctctgggaggggacgagggag 520 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 215 tccgggtgcagccccttcttccgcatcgagcaccgcatcctctgggaggggacgagggag 156 Query: 521 cggagggt 528 |||||||| Sbjct: 155 cggagggt 148
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 404 bits (204), Expect = e-109 Identities = 264/284 (92%) Strand = Plus / Plus Query: 221 aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 280 ||||||||||||||||||||||||||||| |||||| |||| || ||||||||||||| Sbjct: 25347085 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 25347144 Query: 281 acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 340 | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 25347145 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 25347204 Query: 341 gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 400 | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| Sbjct: 25347205 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 25347264 Query: 401 gtgccccccgtcaccagcaccagctcaccgttgcagtacaccttcgcgtcctcgaagatc 460 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 25347265 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 25347324 Query: 461 tccgggtgcagccccttcttccgcatcgagcacctcatcctctg 504 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 25347325 tccgggtgcagccccttcttccgcatcgagcaccgcatcctctg 25347368 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 502 ctgggaggggacgagggagcggagggt 528 ||||||||||||||||||||||||||| Sbjct: 25347474 ctgggaggggacgagggagcggagggt 25347500
>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158C05 Length = 145514 Score = 404 bits (204), Expect = e-109 Identities = 264/284 (92%) Strand = Plus / Plus Query: 221 aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 280 ||||||||||||||||||||||||||||| |||||| |||| || ||||||||||||| Sbjct: 144129 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 144188 Query: 281 acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 340 | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 144189 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 144248 Query: 341 gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 400 | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| Sbjct: 144249 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 144308 Query: 401 gtgccccccgtcaccagcaccagctcaccgttgcagtacaccttcgcgtcctcgaagatc 460 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 144309 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 144368 Query: 461 tccgggtgcagccccttcttccgcatcgagcacctcatcctctg 504 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 144369 tccgggtgcagccccttcttccgcatcgagcaccgcatcctctg 144412 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 502 ctgggaggggacgagggagcggagggt 528 ||||||||||||||||||||||||||| Sbjct: 144518 ctgggaggggacgagggagcggagggt 144544
>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0663E10 Length = 162297 Score = 404 bits (204), Expect = e-109 Identities = 264/284 (92%) Strand = Plus / Plus Query: 221 aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 280 ||||||||||||||||||||||||||||| |||||| |||| || ||||||||||||| Sbjct: 37085 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 37144 Query: 281 acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 340 | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 37145 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 37204 Query: 341 gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 400 | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| Sbjct: 37205 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 37264 Query: 401 gtgccccccgtcaccagcaccagctcaccgttgcagtacaccttcgcgtcctcgaagatc 460 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 37265 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 37324 Query: 461 tccgggtgcagccccttcttccgcatcgagcacctcatcctctg 504 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 37325 tccgggtgcagccccttcttccgcatcgagcaccgcatcctctg 37368 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 502 ctgggaggggacgagggagcggagggt 528 ||||||||||||||||||||||||||| Sbjct: 37474 ctgggaggggacgagggagcggagggt 37500
>gb|AY110540.1| Zea mays CL3870_1 mRNA sequence Length = 834 Score = 363 bits (183), Expect = 4e-97 Identities = 279/313 (89%) Strand = Plus / Minus Query: 215 ggctcaaactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtac 274 ||||| ||||||||||||||||| ||||||||||| |||||| |||| || ||||||| Sbjct: 398 ggctcgaactccgggtcgccgtctgggtgcatctccctccactggtcctcgggccagtac 339 Query: 275 tccttgacgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagc 334 ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 338 tccttgatgtggccccacttcttgcggaacttctcgatctggctgtccatgaccacgagc 279 Query: 335 gccgaggagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactcc 394 ||||||| |||||||||||||||||||||||| || ||||| || ||||||| ||||||| Sbjct: 278 gccgaggtgtcgccgacgtagtaggggtggtttccggaccacacgtccaccgtgtactcc 219 Query: 395 ggcttcgtgccccccgtcaccagcaccagctcaccgttgcagtacaccttcgcgtcctcg 454 ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 218 ggcttggtgnnnnnngtcaccagcaccagctcgccgttgcagtacaccttcgcgtcctcg 159 Query: 455 aagatctccgggtgcagccccttcttccgcatcgagcacctcatcctctgggaggggacg 514 ||||||||||||||| ||||||||| ||||||||||| | ||||| ||||||||||||| Sbjct: 158 tagatctccgggtgcaaccccttcttgcgcatcgagcagcgcatcccctgggaggggacg 99 Query: 515 agggagcggaggg 527 | |||||| |||| Sbjct: 98 acggagcgtaggg 86
>gb|DQ363991.1| Saccharum hybrid cultivar chloroplast 50S ribosomal protein L31 mRNA, partial cds; nuclear gene for chloroplast product Length = 321 Score = 208 bits (105), Expect = 1e-50 Identities = 159/177 (89%) Strand = Plus / Minus Query: 210 cctctggctcaaactccgggtcgccgtcggggtgcatctcaagccactgctccttggtcc 269 |||| ||||| ||||||||||||||||| ||||||||||| |||||| |||| || || Sbjct: 179 cctcgggctcgaactccgggtcgccgtccgggtgcatctccctccactggtcctcgggcc 120 Query: 270 agtactccttgacgtgcccccacttcttgcggaacttctcgatctggctgtccatgacga 329 |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| || | Sbjct: 119 agtattccttgatgtggccccacttcttgcggaacttctcgatctggctgtccatcacca 60 Query: 330 ccagcgccgaggagtcgccgacgtagtaggggtggttccctgaccaaacatccaccg 386 |||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||| Sbjct: 59 ccagcgccgaggtgtcgccgacgtagtaggggtggttcccggaccacacgtccaccg 3
>gb|AY685399.1| Annona cherimola clone LMCH12 microsatellite sequence Length = 490 Score = 44.1 bits (22), Expect = 0.49 Identities = 40/46 (86%) Strand = Plus / Minus Query: 423 gctcaccgttgcagtacaccttcgcgtcctcgaagatctccgggtg 468 |||| ||||||||||||||||| |||| |||| ||| || |||||| Sbjct: 383 gctccccgttgcagtacaccttggcgttctcgtagaacttcgggtg 338
>ref|XM_780717.1| PREDICTED: Strongylocentrotus purpuratus similar to CG17927-PA, isoform A (LOC580674), mRNA Length = 6028 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 cttgcggaacttctcgatctgg 316 |||||||||||||||||||||| Sbjct: 5461 cttgcggaacttctcgatctgg 5440
>ref|XM_308965.2| Anopheles gambiae str. PEST ENSANGP00000020214 (ENSANGG00000017725), partial mRNA Length = 1232 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 439 caccttcgcgtcctcgaagatc 460 |||||||||||||||||||||| Sbjct: 1097 caccttcgcgtcctcgaagatc 1076
>ref|XM_952984.1| Neurospora crassa OR74A hypothetical protein (NCU06868.1) partial mRNA Length = 3159 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 tccttggtccagtactccttg 280 ||||||||||||||||||||| Sbjct: 1220 tccttggtccagtactccttg 1200
>ref|XM_327153.1| Neurospora crassa OR74A hypothetical protein (NCU06868.1) partial mRNA Length = 3159 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 tccttggtccagtactccttg 280 ||||||||||||||||||||| Sbjct: 1220 tccttggtccagtactccttg 1200
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 252 gccactgctccttggtccagtactccttg 280 |||||| |||||||||||||| ||||||| Sbjct: 22280481 gccactcctccttggtccagtcctccttg 22280509
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 252 gccactgctccttggtccagtactccttg 280 |||||| |||||||||||||| ||||||| Sbjct: 22208826 gccactcctccttggtccagtcctccttg 22208854
>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109610 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 252 gccactgctccttggtccagtactccttg 280 |||||| |||||||||||||| ||||||| Sbjct: 81273 gccactcctccttggtccagtcctccttg 81245
>gb|AC155337.1| Brassica rapa subsp. pekinensis clone KBrH117N09, complete sequence Length = 125390 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 422 agctcaccgttgcagtacaccttcgcgtcctcg 454 ||||| ||||||||||| ||||| ||||||||| Sbjct: 90675 agctctccgttgcagtaaaccttagcgtcctcg 90643
>gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4g23, complete sequence Length = 103199 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 97579 gtctcgtcgtcctctggctc 97598 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 91056 gtctcgtcgtcctctggctc 91075
>gb|AY741093.1| Integration vector pJK202, complete sequence Length = 53204 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 284 tgcccccacttcttgcggaacttctcga 311 |||| |||||||||||||||||| |||| Sbjct: 8542 tgccgccacttcttgcggaacttgtcga 8515
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 cgcgacggcggcggcgcccg 563 |||||||||||||||||||| Sbjct: 29409 cgcgacggcggcggcgcccg 29390
>gb|AY552325.1| Didelphis virginiana insulin-like growth factor 2 (IGF2) gene, complete cds Length = 9584 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 acggtacatctggggaatcaagcc 105 ||||||||||||||||| |||||| Sbjct: 1952 acggtacatctggggaagcaagcc 1975
>ref|XM_426310.1| PREDICTED: Gallus gallus similar to dehydrogenase/reductase (SDR family) member 8; retinal short-chain dehydrogenase/reductase 2; 17-beta-hydroxysteroid dehydrogenase type XI; 17-BETA-HSD11; 17-BETA-HSDXI (LOC428754), mRNA Length = 1407 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cccgtcaccagcaccagctc 426 |||||||||||||||||||| Sbjct: 488 cccgtcaccagcaccagctc 469
>ref|XM_420547.1| PREDICTED: Gallus gallus similar to dehydrogenase/reductase (SDR family) member 8; retinal short-chain dehydrogenase/reductase 2; 17-beta-hydroxysteroid dehydrogenase type XI; 17-BETA-HSD11; 17-BETA-HSDXI (LOC422588), mRNA Length = 1435 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cccgtcaccagcaccagctc 426 |||||||||||||||||||| Sbjct: 152 cccgtcaccagcaccagctc 133
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ccgcatcgagcacctcatcc 500 |||||||||||||||||||| Sbjct: 1815893 ccgcatcgagcacctcatcc 1815912
>gb|AC154726.2| Mus musculus BAC clone RP24-373I6 from chromosome 13, complete sequence Length = 173853 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acatctggggaatcaagcca 106 |||||||||||||||||||| Sbjct: 14272 acatctggggaatcaagcca 14291
>gb|AC135312.18| Medicago truncatula clone mth2-34c3, complete sequence Length = 125619 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 16783 gtctcgtcgtcctctggctc 16802
>emb|AJ744860.1| uncultured bacterium pTB11 plasmid complete genome Length = 68869 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 284 tgcccccacttcttgcggaacttctcga 311 |||| |||||||||||||||||| |||| Sbjct: 17795 tgccgccacttcttgcggaacttgtcga 17768
>ref|XM_748454.1| Aspergillus fumigatus Af293 nucleoside diphosphatase Ynd1 (Afu5g11010) partial mRNA Length = 2160 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 tcttgcggaacttctcgatc 313 |||||||||||||||||||| Sbjct: 237 tcttgcggaacttctcgatc 256
>emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, complete sequence Length = 146757 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 acggtacatctggggaatcaagcc 105 ||||||||||||||||| |||||| Sbjct: 63215 acggtacatctggggaagcaagcc 63192
>gb|AC121976.2| Mus musculus BAC clone RP24-286N17 from 8, complete sequence Length = 161146 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 ctcatcctctgggaggggac 513 |||||||||||||||||||| Sbjct: 152548 ctcatcctctgggaggggac 152567
>gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete sequence Length = 119095 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 70011 gtctcgtcgtcctctggctc 69992
>gb|AC144893.15| Medicago truncatula clone mth2-29d23, complete sequence Length = 114354 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 98184 gtctcgtcgtcctctggctc 98203
>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence Length = 138465 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 78358 gtctcgtcgtcctctggctc 78377
>gb|AC149496.23| Medicago truncatula clone mth2-119c5, complete sequence Length = 115576 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 6407 gtctcgtcgtcctctggctc 6388
>gb|AC151740.21| Medicago truncatula clone mth2-82n16, complete sequence Length = 131700 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 40254 gtctcgtcgtcctctggctc 40273 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 16213 gtctcgtcgtcctctggctc 16194
>gb|AC136138.30| Medicago truncatula clone mth2-8f9, complete sequence Length = 128267 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 124398 gtctcgtcgtcctctggctc 124379 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 116836 gtctcgtcgtcctctggctc 116817
>gb|AC133779.21| Medicago truncatula clone mth2-27n4, complete sequence Length = 100702 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 61414 gtctcgtcgtcctctggctc 61395
>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence Length = 130592 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 130182 gtctcgtcgtcctctggctc 130201
>gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete sequence Length = 124828 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 90525 gtctcgtcgtcctctggctc 90506
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 102717 gtctcgtcgtcctctggctc 102698
>gb|AC020931.6| Homo sapiens chromosome 19 clone CTD-2240E14, complete sequence Length = 129048 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 ctgggaggggacgagggagc 521 |||||||||||||||||||| Sbjct: 25519 ctgggaggggacgagggagc 25538
>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence Length = 129518 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 47210 gtctcgtcgtcctctggctc 47229
>gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete sequence Length = 123526 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 5058 gtctcgtcgtcctctggctc 5077
>gb|AC147010.31| Medicago truncatula clone mth2-145p5, complete sequence Length = 132320 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 122592 gtctcgtcgtcctctggctc 122611 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 116404 gtctcgtcgtcctctggctc 116423
>gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete sequence Length = 119041 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 34082 gtctcgtcgtcctctggctc 34063
>gb|AC138527.22| Medicago truncatula clone mth2-10a20, complete sequence Length = 115023 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 39464 gtctcgtcgtcctctggctc 39445
>gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete sequence Length = 127642 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 65666 gtctcgtcgtcctctggctc 65647
>gb|AC149128.3| Medicago truncatula chromosome 7 BAC clone mth2-139i2, complete sequence Length = 93434 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 82578 gtctcgtcgtcctctggctc 82559
>emb|BX935297.2| Gallus gallus finished cDNA, clone ChEST958m19 Length = 1434 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cccgtcaccagcaccagctc 426 |||||||||||||||||||| Sbjct: 152 cccgtcaccagcaccagctc 133
>gb|AF330047.1|AF330047 Mus musculus chromosome 13 clone CITB-332O23, partial sequence Length = 23088 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ccacttcttgcggaacttct 308 |||||||||||||||||||| Sbjct: 5907 ccacttcttgcggaacttct 5926
>gb|AY572422.1| Fusarium oxysporum f. sp. lycopersici chitin synthase class II (chs2) gene, complete cds Length = 4889 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ccagcaccagctcaccgttg 433 |||||||||||||||||||| Sbjct: 1938 ccagcaccagctcaccgttg 1919
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 cgcgacggcggcggcgcccg 563 |||||||||||||||||||| Sbjct: 13562303 cgcgacggcggcggcgcccg 13562322
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 cgcgacggcggcggcgcccg 563 |||||||||||||||||||| Sbjct: 4378046 cgcgacggcggcggcgcccg 4378027
>emb|BX935518.1| Gallus gallus finished cDNA, clone ChEST537g23 Length = 1427 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cccgtcaccagcaccagctc 426 |||||||||||||||||||| Sbjct: 144 cccgtcaccagcaccagctc 125
>emb|BX935286.1| Gallus gallus finished cDNA, clone ChEST959e2 Length = 1434 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cccgtcaccagcaccagctc 426 |||||||||||||||||||| Sbjct: 152 cccgtcaccagcaccagctc 133
>emb|BX933660.1| Gallus gallus finished cDNA, clone ChEST943c3 Length = 1434 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cccgtcaccagcaccagctc 426 |||||||||||||||||||| Sbjct: 152 cccgtcaccagcaccagctc 133
>emb|BX929851.1| Gallus gallus finished cDNA, clone ChEST657c10 Length = 1047 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cccgtcaccagcaccagctc 426 |||||||||||||||||||| Sbjct: 144 cccgtcaccagcaccagctc 125
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 449 tcctcgaagatctccgggtgcagc 472 ||||||||| |||||||||||||| Sbjct: 2963472 tcctcgaagctctccgggtgcagc 2963495
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tcgatctggctgtccatgac 327 |||||||||||||||||||| Sbjct: 8060512 tcgatctggctgtccatgac 8060493
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 tctcgcgacggcggcggcgc 560 |||||||||||||||||||| Sbjct: 302313 tctcgcgacggcggcggcgc 302332
>ref|XM_316060.2| Anopheles gambiae str. PEST ENSANGP00000012551 (ENSANGG00000010062), partial mRNA Length = 1653 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 ccttcgcgtcctcgaagatctccg 464 ||||||||||||||||| |||||| Sbjct: 1627 ccttcgcgtcctcgaagctctccg 1604
>ref|XM_316061.2| Anopheles gambiae str. PEST ENSANGP00000023205 (ENSANGG00000010062), partial mRNA Length = 1952 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 ccttcgcgtcctcgaagatctccg 464 ||||||||||||||||| |||||| Sbjct: 1776 ccttcgcgtcctcgaagctctccg 1753
>gb|AC153814.4| Mus musculus chromosome 17, clone RP23-323F20, complete sequence Length = 222749 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acatctggggaatcaagcca 106 |||||||||||||||||||| Sbjct: 194009 acatctggggaatcaagcca 194028
>emb|CT573054.2| Medicago truncatula chromosome 5 clone mte1-76j13, COMPLETE SEQUENCE Length = 114731 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 43772 gtctcgtcgtcctctggctc 43753
>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE Length = 132108 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 131687 gtctcgtcgtcctctggctc 131706
>emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9 on chromosome 3, complete sequence Length = 113846 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 84574 gtctcgtcgtcctctggctc 84555
>emb|CT010518.7| M.truncatula DNA sequence from clone MTH2-78A9 on chromosome 3, complete sequence Length = 135014 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 46073 gtctcgtcgtcctctggctc 46054
>gb|AF016585.1|AF016585 Streptomyces caelestis cytochrome P-450 hydroxylase homolog (nidi) gene, partial cds; polyketide synthase modules 1 through 7 (nidA) genes, complete cds; and N-methyltransferase homolog gene, partial cds Length = 41097 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 tgggaggggacgagggagcg 522 |||||||||||||||||||| Sbjct: 12997 tgggaggggacgagggagcg 12978
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 cgcgacggcggcggcgcccg 563 |||||||||||||||||||| Sbjct: 4386740 cgcgacggcggcggcgcccg 4386721
>emb|CT030254.7| Mouse DNA sequence from clone RP24-343E1 on chromosome 13, complete sequence Length = 147004 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acatctggggaatcaagcca 106 |||||||||||||||||||| Sbjct: 67754 acatctggggaatcaagcca 67773
>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence Length = 133238 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 cgcgacggcggcggcgcccg 563 |||||||||||||||||||| Sbjct: 88766 cgcgacggcggcggcgcccg 88785
>dbj|AB037899.1| Oryza sativa (japonica cultivar-group) OspolD1 mRNA for OsPol delta large subunit, complete cds Length = 3706 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 cgcgacggcggcggcgcccg 563 |||||||||||||||||||| Sbjct: 161 cgcgacggcggcggcgcccg 180
>emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l20, COMPLETE SEQUENCE Length = 150486 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 135443 gtctcgtcgtcctctggctc 135424
>emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9 on chromosome 3, complete sequence Length = 151325 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtctcgtcgtcctctggctc 219 |||||||||||||||||||| Sbjct: 97639 gtctcgtcgtcctctggctc 97658
>gb|AC092266.4| Homo sapiens chromosome 5 clone RP11-24P24, complete sequence Length = 171601 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 caaactagcataattgagtt 128 |||||||||||||||||||| Sbjct: 107790 caaactagcataattgagtt 107771
>gb|M93696.1|RP4TRBAO Plasmid RP4 (trbA-trbO) genes, complete cds Length = 13205 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 284 tgcccccacttcttgcggaacttctcga 311 |||| |||||||||||||||||| |||| Sbjct: 3576 tgccgccacttcttgcggaacttgtcga 3549
>gb|L27758.1|BIACOMGEN Birmingham IncP-alpha plasmid (R18, R68, RK2, RP1, RP4) complete genome Length = 60099 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 284 tgcccccacttcttgcggaacttctcga 311 |||| |||||||||||||||||| |||| Sbjct: 21533 tgccgccacttcttgcggaacttgtcga 21506 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,928,706 Number of Sequences: 3902068 Number of extensions: 3928706 Number of successful extensions: 88191 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86988 Number of HSP's gapped (non-prelim): 1202 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
