| Clone Name | rbags11f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 414 bits (209), Expect = e-112 Identities = 379/437 (86%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||||||| |||| || ||||||||||||||||||||| |||| ||| | |||||| ||| Sbjct: 9420368 aatcttcagttagcaggaaccttcctgtttggctcaaaaacatacttaaccaaagaatcc 9420309 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || |||||||||||||| |||||||| ||||||| ||| || || |||||||||||||| Sbjct: 9420308 ttgatggacagtagctcggggaactcggacttcaacttcgatgcatccatttcgttgtta 9420249 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||||||||||||||||||||||||||| || | || |||||| |||||||||||||| Sbjct: 9420248 cttcttggtgcaactataaccttggcctgttcctcaagagtgaagttggtccacttgaag 9420189 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || ||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 9420188 tcggggttgaggtatttcttgtacatctccaggatctcgttgtggctgacaaccccagga 9420129 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || |||||||| ||||||| | ||||| ||||| Sbjct: 9420128 ttggtgaagttccatatgcccctgcagtcccgcttcgccatctcaatggagatgggcaaa 9420069 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| ||||||||||||||||| || ||||| |||||||||||||| || |||| Sbjct: 9420068 agctcatccaaaattgtcatactgttggggatgtttaccaccttgtcataacgagctatc 9420009 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| || || ||||| | ||||||||||||||||||||||||| ||| Sbjct: 9420008 tttgtgatgaagttacgggggttgctcaaatctgatgatatgggcatcctgactcgaagc 9419949 Query: 597 gtacagacattatcata 613 |||||||| || ||||| Sbjct: 9419948 gtacagacgttgtcata 9419932
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 414 bits (209), Expect = e-112 Identities = 379/437 (86%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||||||| |||| || ||||||||||||||||||||| |||| ||| | |||||| ||| Sbjct: 117768 aatcttcagttagcaggaaccttcctgtttggctcaaaaacatacttaaccaaagaatcc 117709 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || |||||||||||||| |||||||| ||||||| ||| || || |||||||||||||| Sbjct: 117708 ttgatggacagtagctcggggaactcggacttcaacttcgatgcatccatttcgttgtta 117649 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||||||||||||||||||||||||||| || | || |||||| |||||||||||||| Sbjct: 117648 cttcttggtgcaactataaccttggcctgttcctcaagagtgaagttggtccacttgaag 117589 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || ||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 117588 tcggggttgaggtatttcttgtacatctccaggatctcgttgtggctgacaaccccagga 117529 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || |||||||| ||||||| | ||||| ||||| Sbjct: 117528 ttggtgaagttccatatgcccctgcagtcccgcttcgccatctcaatggagatgggcaaa 117469 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| ||||||||||||||||| || ||||| |||||||||||||| || |||| Sbjct: 117468 agctcatccaaaattgtcatactgttggggatgtttaccaccttgtcataacgagctatc 117409 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| || || ||||| | ||||||||||||||||||||||||| ||| Sbjct: 117408 tttgtgatgaagttacgggggttgctcaaatctgatgatatgggcatcctgactcgaagc 117349 Query: 597 gtacagacattatcata 613 |||||||| || ||||| Sbjct: 117348 gtacagacgttgtcata 117332
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 414 bits (209), Expect = e-112 Identities = 379/437 (86%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||||||| |||| || ||||||||||||||||||||| |||| ||| | |||||| ||| Sbjct: 9418489 aatcttcagttagcaggaaccttcctgtttggctcaaaaacatacttaaccaaagaatcc 9418430 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || |||||||||||||| |||||||| ||||||| ||| || || |||||||||||||| Sbjct: 9418429 ttgatggacagtagctcggggaactcggacttcaacttcgatgcatccatttcgttgtta 9418370 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||||||||||||||||||||||||||| || | || |||||| |||||||||||||| Sbjct: 9418369 cttcttggtgcaactataaccttggcctgttcctcaagagtgaagttggtccacttgaag 9418310 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || ||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 9418309 tcggggttgaggtatttcttgtacatctccaggatctcgttgtggctgacaaccccagga 9418250 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || |||||||| ||||||| | ||||| ||||| Sbjct: 9418249 ttggtgaagttccatatgcccctgcagtcccgcttcgccatctcaatggagatgggcaaa 9418190 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| ||||||||||||||||| || ||||| |||||||||||||| || |||| Sbjct: 9418189 agctcatccaaaattgtcatactgttggggatgtttaccaccttgtcataacgagctatc 9418130 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| || || ||||| | ||||||||||||||||||||||||| ||| Sbjct: 9418129 tttgtgatgaagttacgggggttgctcaaatctgatgatatgggcatcctgactcgaagc 9418070 Query: 597 gtacagacattatcata 613 |||||||| || ||||| Sbjct: 9418069 gtacagacgttgtcata 9418053
>dbj|AK103544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E05, full insert sequence Length = 2499 Score = 406 bits (205), Expect = e-110 Identities = 378/437 (86%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||||||| |||| || ||||||||||||||||||||| |||| ||| | |||||| ||| Sbjct: 2188 aatcttcagttagcaggaaccttcctgtttggctcaaaaacatacttaaccaaagaatcc 2129 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || |||||||||||||| |||||||| ||||||| ||| || || |||||||||||||| Sbjct: 2128 ttgatggacagtagctcggggaactcggacttcaacttcgatgcatccatttcgttgtta 2069 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||||||||||||||||||||||||||| || | || |||||| |||||||||||||| Sbjct: 2068 cttcttggtgcaactataaccttggcctgttcctcaagagtgaagttggtccacttgaag 2009 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || ||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 2008 tcggggttgaggtatttcttgtacatctccaggatctcgttgtggctgacaaccccagga 1949 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || |||||||| ||||||| | ||||| ||||| Sbjct: 1948 ttggtgaagttccatatgcccctgcagtcccgcttcgccatctcaatggagatgggcaaa 1889 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| ||||||||||||||||| || ||| | |||||||||||||| || |||| Sbjct: 1888 agctcatccaaaattgtcatactgttggggatgattaccaccttgtcataacgagctatc 1829 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| || || ||||| | ||||||||||||||||||||||||| ||| Sbjct: 1828 tttgtgatgaagttacgggggttgctcaaatctgatgatatgggcatcctgactcgaagc 1769 Query: 597 gtacagacattatcata 613 |||||||| || ||||| Sbjct: 1768 gtacagacgttgtcata 1752
>dbj|AK064303.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B05, full insert sequence Length = 1892 Score = 406 bits (205), Expect = e-110 Identities = 378/437 (86%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||||||| |||| || ||||||||||||||||||||| |||| ||| | |||||| ||| Sbjct: 1579 aatcttcagttagcaggaaccttcctgtttggctcaaaaacatacttaaccaaagaatcc 1520 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || |||||||||| ||| |||||||| ||||||| ||| || || |||||||||||||| Sbjct: 1519 ttgatggacagtaactcggggaactcggacttcaacttcgatgcatccatttcgttgtta 1460 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||||||||||||||||||||||||||| || | || |||||| |||||||||||||| Sbjct: 1459 cttcttggtgcaactataaccttggcctgttcctcaagagtgaagttggtccacttgaag 1400 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || ||||||| ||||| ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1399 tcggggttgaggtatttcttgtacatctccaggatctcgttgtggctgacaaccccagga 1340 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || |||||||| ||||||| | ||||| ||||| Sbjct: 1339 ttggtgaagttccatatgcccctgcagtcccgcttcgccatctcaatggagatgggcaaa 1280 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| ||||||||||||||||| || ||||| |||||||||||||| || |||| Sbjct: 1279 agctcatccaaaattgtcatactgttggggatgtttaccaccttgtcataacgagctatc 1220 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| || || ||||| | ||||||||||||||||||||||||| ||| Sbjct: 1219 tttgtgatgaagttacgggggttgctcaaatctgatgatatgggcatcctgactcgaagc 1160 Query: 597 gtacagacattatcata 613 |||||||| || ||||| Sbjct: 1159 gtacagacgttgtcata 1143
>gb|BT018879.1| Zea mays clone EL01T0203E01.d mRNA sequence Length = 2108 Score = 394 bits (199), Expect = e-106 Identities = 389/454 (85%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||| ||||||| || |||||||||||| ||||||||||| | |||||||||||| ||| Sbjct: 1940 aatcctcaattaacaggaaccttcctgttgggctcaaagacgtacttgatcaaagaatcc 1881 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || |||||||| |||| ||||||||| | |||||| || |||| |||||| ||||||||| Sbjct: 1880 ttgatggacagcagctgagggaactcggccttcagtttcgacgtgtccatctcgttgttg 1821 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||| || || ||||| ||||||||||| |||| ||| ||||| ||||||||||||| Sbjct: 1820 cttctaggcgcgactatcaccttggcctgttcttcgagtgtgaaattggtccacttgaaa 1761 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || || |||||||||| |||||||||||| ||||||||||| || || ||| | |||||| Sbjct: 1760 tcaggattgatgtatttcttgtacatctctagaatctcgttgtggcttacagcgccaggg 1701 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || ||||| || ||||||| | |||||||||| Sbjct: 1700 ttggtgaagttccatatgcccctgcagtcccgtttcgccatctcaatggagataggcaga 1641 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| || |||||||| ||||| |||||||||||||||||||| || || |||| Sbjct: 1640 agctcatccaagattgtcatgctgttgggaatgttcaccaccttgtcgtaacgagctatc 1581 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||| Sbjct: 1580 tttgtgatgaagttacgagggttgcttagatctgatgatataggcatcctgaccctaaga 1521 Query: 597 gtacagacattatcatagnccttcaataactctt 630 ||||||||||||||||| ||||||||| ||||| Sbjct: 1520 gtacagacattatcatactccttcaatagctctt 1487
>gb|BT018012.1| Zea mays clone EL01N0528B06.c mRNA sequence Length = 1008 Score = 394 bits (199), Expect = e-106 Identities = 389/454 (85%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||| ||||||| || |||||||||||| ||||||||||| | |||||||||||| ||| Sbjct: 626 aatcctcaattaacaggaaccttcctgttgggctcaaagacgtacttgatcaaagaatcc 567 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || |||||||| |||| ||||||||| | |||||| || |||| |||||| ||||||||| Sbjct: 566 ttgatggacagcagctgagggaactcggccttcagtttcgacgtgtccatctcgttgttg 507 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||| || || ||||| ||||||||||| |||| ||| ||||| ||||||||||||| Sbjct: 506 cttctaggcgcgactatcaccttggcctgttcttcgagtgtgaaattggtccacttgaaa 447 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || || |||||||||| |||||||||||| ||||||||||| || || ||| | |||||| Sbjct: 446 tcaggattgatgtatttcttgtacatctctagaatctcgttgtggcttacagcgccaggg 387 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || ||||| || ||||||| | |||||||||| Sbjct: 386 ttggtgaagttccatatgcccctgcagtcccgtttcgccatctcaatggagataggcaga 327 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| || |||||||| ||||| |||||||||||||||||||| || || |||| Sbjct: 326 agctcatccaagattgtcatgctgttgggaatgttcaccaccttgtcgtaacgagctatc 267 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||| Sbjct: 266 tttgtgatgaagttacgagggttgcttagatctgatgatataggcatcctgaccctaaga 207 Query: 597 gtacagacattatcatagnccttcaataactctt 630 ||||||||||||||||| ||||||||| ||||| Sbjct: 206 gtacagacattatcatactccttcaatagctctt 173
>gb|AY103981.1| Zea mays PCO118173 mRNA sequence Length = 1418 Score = 371 bits (187), Expect = 2e-99 Identities = 380/446 (85%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaaccttcctgtttggctcaaagacattcttgatcaaagattcc 236 |||| |||||||| | |||||||||||| ||||||||||||| ||||||||||| ||| Sbjct: 1206 aatcctcaattagctggaaccttcctgttaggctcaaagacatatttgatcaaagaatcc 1147 Query: 237 ttaatggacagtagctcagggaactctgacttcagctttgacgcgtccatttcgttgttg 296 || ||||||| || | || |||||| | ||||| || ||||| ||||| || |||||| Sbjct: 1146 ttgatggacatcagttgagagaactcggccttcaatttcgacgcatccatctcattgttg 1087 Query: 297 cttcttggtgcaactataaccttggcctgctcttngagcgtgaagntggtccacttgaag 356 ||||| ||||| ||||| ||||||| ||||||| ||| |||||| |||||||||| || Sbjct: 1086 cttctaggtgcgactatgaccttggattgctcttcgagtgtgaagttggtccacttaaaa 1027 Query: 357 tccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaaccccaggg 416 || || |||||||||| ||||||||||||||||||||| || || |||||||| |||||| Sbjct: 1026 tcaggattgatgtatttcttgtacatctccagaatctcattgtggctgacaacgccaggg 967 Query: 417 ttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggcaag 476 |||||||| |||||||||||||| || ||||| |||||||||| | ||||| |||| Sbjct: 966 ttggtgaagttccatatgcccctgcagtcccgttttgccatctcaatggagatgggcaga 907 Query: 477 agttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnctatt 536 || ||||| ||||||||||| ||||| |||||||||||||||||||| || || |||| Sbjct: 906 agctcatccaaaattgtcatgctgttgggaatgttcaccaccttgtcgtaacgagctatc 847 Query: 537 tttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactctaaga 596 |||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| |||||| Sbjct: 846 tttgtgatgaagttacgaggattgtttagatctgatgatataggcatcctgaccctaaga 787 Query: 597 gtacagacattatcatagnccttcaa 622 ||||||||||||||||| ||||||| Sbjct: 786 gtacagacattatcatactccttcaa 761
>gb|AY108467.1| Zea mays PCO142331 mRNA sequence Length = 1381 Score = 165 bits (83), Expect = 2e-37 Identities = 345/434 (79%) Strand = Plus / Minus Query: 195 accttcctgtttggctcaaagacattcttgatcaaagattccttaatggacagtagctca 254 ||||| ||||| ||||||||||| | ||||||||| || ||||| || ||||| ||||| Sbjct: 1164 acctttctgttgggctcaaagacgtacttgatcaacgagtccttgatcgacagcagctcg 1105 Query: 255 gggaactctgacttcagctttgacgcgtccatttcgttgttgcttcttggtgcaactata 314 |||||||| ||||||||| | |||||||| ||||||||||||| || ||||| || Sbjct: 1104 gggaactcgttcttcagcttggttgcgtccatctcgttgttgcttcgcggagcaacgatg 1045 Query: 315 accttggcctgctcttngagcgtgaagntggtccacttgaagtccgggttgatgtattcc 374 ||||| |||||||| | ||| |||||| | |||||||||||| |||| |||||| | | Sbjct: 1044 accttcgcctgctcctcgagggtgaagtttgtccacttgaagctagggtcgatgtactgc 985 Query: 375 ttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaattccatatg 434 ||||||||||| || |||||||| || ||||| || || ||||||||||| || | ||| Sbjct: 984 ttgtacatctctaggatctcgttgtggctgacgacgccggggttggtgaagttatagatg 925 Query: 435 cccctacaatcccgctttgccatctntacagagataggcaagagttcatctaaaattgtc 494 |||| | || ||| ||||||| || ||||| |||| |||||| || || || ||| Sbjct: 924 ccccgcaggttcctcttcgccatctccactgagatgggcaggagttcgtccaatatcgtc 865 Query: 495 atactgttaggaatgttcaccaccttgtcatagcggnctatttttgtgatgaagttccga 554 || ||||| || |||||||||||||||| || ||| || ||||| | ||||||||| Sbjct: 864 atgctgttggggatgttcaccaccttgttgtaacggctgatctttgtcacgaagttccgc 805 Query: 555 ggattgcttaggtctgatgatatgggcatcctgactctaagagtacagacattatcatag 614 || ||||| ||||| || ||||| ||||||| |||| ||||| ||||| || ||||| Sbjct: 804 gggttgctgaggtcagaggatatcggcatccgaactcgcagagtgcagacgttctcatac 745 Query: 615 nccttcaataactc 628 ||||||||||||| Sbjct: 744 tccttcaataactc 731
>gb|AC182659.2| Populus trichocarpa clone Pop1-125A14, complete sequence Length = 75970 Score = 115 bits (58), Expect = 2e-22 Identities = 209/260 (80%) Strand = Plus / Minus Query: 354 aagtccgggttgatgtattccttgtacatctccagaatctcgttatgactgacaacccca 413 ||||||||||| ||||| | |||||||||||||| |||||| ||||| || ||||| ||| Sbjct: 28655 aagtccgggttaatgtagttcttgtacatctccaaaatctcattatggctcacaacacca 28596 Query: 414 gggttggtgaaattccatatgcccctacaatcccgctttgccatctntacagagataggc 473 ||||| ||||| ||||||||||| || | | || ||||||||||| | || ||||| Sbjct: 28595 gggtttgtgaagttccatatgcctctcaagttcctctttgccatctcaattgaaataggt 28536 Query: 474 aagagttcatctaaaattgtcatactgttaggaatgttcaccaccttgtcatagcggnct 533 | ||||| || | || ||||| ||||| ||||||||||||||||| | |||||| Sbjct: 28535 agaagttcgtccaggatagtcatgctgtttggaatgttcaccaccttattatagcgagaa 28476 Query: 534 atttttgtgatgaagttccgaggattgcttaggtctgatgatatgggcatcctgactcta 593 || ||||| |||||||| || || ||| |||||||||||||||| ||||| || ||||| Sbjct: 28475 atctttgtaatgaagttgcgtgggttgtttaggtctgatgatattggcattctaactctg 28416 Query: 594 agagtacagacattatcata 613 || || || ||||| ||||| Sbjct: 28415 agggtgcacacattgtcata 28396 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 210 tcaaagacattcttgatcaaagattccttaatggacagtagctcagggaactctgacttc 269 |||||||||| |||||| || || || || || | ||| | |||||||||||| |||| Sbjct: 28799 tcaaagacatacttgattaatgactctttgattggcagcaactcagggaactcgttcttc 28740 Query: 270 agctttgacgcgtccatttcgttgttgcttcttggtgcaactataaccttggcctgctc 328 ||||| ||||| ||||| || |||||||| | || |||||||| |||||||| ||||| Sbjct: 28739 agcttggacgcatccatctcattgttgctccggggggcaactatcaccttggcttgctc 28681
>gb|AF359121.1| Pinus sylvestris isolate plus tree E635C putative dTDP-glucose 4,6-dehydratase gene, partial cds Length = 212 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| ||| ||||||||||||| |||||||| || || |||||||||||||| ||||| Sbjct: 90 gatgtagtccctgtacatctccaggatctcgttgtggctaacaaccccagggttcgtgaa 31 Query: 425 attcca 430 |||||| Sbjct: 30 attcca 25
>gb|BT014616.1| Lycopersicon esculentum clone 134102R, mRNA sequence Length = 2345 Score = 73.8 bits (37), Expect = 6e-10 Identities = 170/215 (79%) Strand = Plus / Minus Query: 369 tattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaattc 428 |||| ||||||||| |||| ||||| ||||| || ||||| || ||||| ||||||||| Sbjct: 1956 tatttcttgtacatttccaatatctcattatggctcacaacacccgggtttgtgaaattc 1897 Query: 429 catatgcccctacaatcccgctttgccatctntacagagataggcaagagttcatctaaa 488 |||||||| || || ||||||||||||| | || ||||| | || ||||| || Sbjct: 1896 catatgcctctgagattacgctttgccatctcaattgaaataggaagaagctcatccaat 1837 Query: 489 attgtcatactgttaggaatgttcaccaccttgtcatagcggnctatttttgtgatgaag 548 || ||||||||||||||||| || |||||||| | ||||||| || || || ||||| Sbjct: 1836 atggtcatactgttaggaatattgaccaccttattatagcggctgatcttggtaatgaaa 1777 Query: 549 ttccgaggattgcttaggtctgatgatatgggcat 583 || ||||| ||||| || ||||| ||||| ||||| Sbjct: 1776 ttgcgagggttgctgagatctgaagatattggcat 1742
>ref|NM_104228.3| Arabidopsis thaliana MUM4 (MUCILAGE-MODIFIED 4); catalytic AT1G53500 (MUM4) mRNA, complete cds Length = 2526 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 2139 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 2080 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 2079 attccatatgcc 2068
>ref|NM_106505.3| Arabidopsis thaliana ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); transferase, transferring glycosyl groups AT1G78580 (ATTPS1) mRNA, complete cds Length = 4635 Score = 71.9 bits (36), Expect = 2e-09 Identities = 163/206 (79%) Strand = Plus / Plus Query: 225 atcaaagattccttaatggacagtagctcagggaactctgacttcagctttgacgcgtcc 284 |||| ||| ||||| || || |||||||||||||||||| ||| ||||| || || ||| Sbjct: 3236 atcagagactccttgatagagagtagctcagggaactctttcttgagcttggaagcatcc 3295 Query: 285 atttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaagntg 344 || ||||||||||||||||| || || || || || || ||||| | | |||||| | Sbjct: 3296 atctcgttgttgcttcttggagccacaatgactttagcttgctcctctaatgtgaagttt 3355 Query: 345 gtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatgactg 404 | ||| ||||| || ||||||||||| || |||||||||| || |||||||| || || Sbjct: 3356 gcccatttgaattcagggttgatgtagtctctgtacatctctaggatctcgttgtggctc 3415 Query: 405 acaaccccagggttggtgaaattcca 430 || || || ||||| ||||| ||||| Sbjct: 3416 accacacctgggtttgtgaagttcca 3441
>ref|NM_106504.2| Arabidopsis thaliana RHM1; NAD binding / catalytic AT1G78570 (RHM1) transcript variant AT1G78570.1 mRNA, complete cds Length = 2744 Score = 71.9 bits (36), Expect = 2e-09 Identities = 163/206 (79%) Strand = Plus / Minus Query: 225 atcaaagattccttaatggacagtagctcagggaactctgacttcagctttgacgcgtcc 284 |||| ||| ||||| || || |||||||||||||||||| ||| ||||| || || ||| Sbjct: 2151 atcagagactccttgatagagagtagctcagggaactctttcttgagcttggaagcatcc 2092 Query: 285 atttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaagntg 344 || ||||||||||||||||| || || || || || || ||||| | | |||||| | Sbjct: 2091 atctcgttgttgcttcttggagccacaatgactttagcttgctcctctaatgtgaagttt 2032 Query: 345 gtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatgactg 404 | ||| ||||| || ||||||||||| || |||||||||| || |||||||| || || Sbjct: 2031 gcccatttgaattcagggttgatgtagtctctgtacatctctaggatctcgttgtggctc 1972 Query: 405 acaaccccagggttggtgaaattcca 430 || || || ||||| ||||| ||||| Sbjct: 1971 accacacctgggtttgtgaagttcca 1946
>ref|NM_001036220.1| Arabidopsis thaliana RHM1; NAD binding / catalytic AT1G78570 (RHM1) transcript variant AT1G78570.2 mRNA, complete cds Length = 2912 Score = 71.9 bits (36), Expect = 2e-09 Identities = 163/206 (79%) Strand = Plus / Minus Query: 225 atcaaagattccttaatggacagtagctcagggaactctgacttcagctttgacgcgtcc 284 |||| ||| ||||| || || |||||||||||||||||| ||| ||||| || || ||| Sbjct: 2285 atcagagactccttgatagagagtagctcagggaactctttcttgagcttggaagcatcc 2226 Query: 285 atttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaagntg 344 || ||||||||||||||||| || || || || || || ||||| | | |||||| | Sbjct: 2225 atctcgttgttgcttcttggagccacaatgactttagcttgctcctctaatgtgaagttt 2166 Query: 345 gtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatgactg 404 | ||| ||||| || ||||||||||| || |||||||||| || |||||||| || || Sbjct: 2165 gcccatttgaattcagggttgatgtagtctctgtacatctctaggatctcgttgtggctc 2106 Query: 405 acaaccccagggttggtgaaattcca 430 || || || ||||| ||||| ||||| Sbjct: 2105 accacacctgggtttgtgaagttcca 2080
>gb|AC007260.2| Arabidopsis thaliana chromosome I BAC T30F21 genomic sequence, complete sequence Length = 78378 Score = 71.9 bits (36), Expect = 2e-09 Identities = 163/206 (79%) Strand = Plus / Plus Query: 225 atcaaagattccttaatggacagtagctcagggaactctgacttcagctttgacgcgtcc 284 |||| ||| ||||| || || |||||||||||||||||| ||| ||||| || || ||| Sbjct: 38575 atcagagactccttgatagagagtagctcagggaactctttcttgagcttggaagcatcc 38634 Query: 285 atttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaagntg 344 || ||||||||||||||||| || || || || || || ||||| | | |||||| | Sbjct: 38635 atctcgttgttgcttcttggagccacaatgactttagcttgctcctctaatgtgaagttt 38694 Query: 345 gtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatgactg 404 | ||| ||||| || ||||||||||| || |||||||||| || |||||||| || || Sbjct: 38695 gcccatttgaattcagggttgatgtagtctctgtacatctctaggatctcgttgtggctc 38754 Query: 405 acaaccccagggttggtgaaattcca 430 || || || ||||| ||||| ||||| Sbjct: 38755 accacacctgggtttgtgaagttcca 38780
>gb|AY328518.1| Arabidopsis thaliana putative UDP-L-rhamnose synthase MUM4 (MUM4) mRNA, complete cds Length = 2479 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 2140 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 2081 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 2080 attccatatgcc 2069
>emb|AJ565874.1|ATH565874 Arabidopsis thaliana mRNA for putative NDP-rhamnose synthase (rhm2 gene) Length = 2004 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 1830 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 1771 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 1770 attccatatgcc 1759
>gb|AY081471.1| Arabidopsis thaliana similar to dTDP-D-glucose 4,6-dehydratase (At1g78570) mRNA, complete cds Length = 2126 Score = 71.9 bits (36), Expect = 2e-09 Identities = 163/206 (79%) Strand = Plus / Minus Query: 225 atcaaagattccttaatggacagtagctcagggaactctgacttcagctttgacgcgtcc 284 |||| ||| ||||| || || |||||||||||||||||| ||| ||||| || || ||| Sbjct: 1976 atcagagactccttgatagagagtagctcagggaactctttcttgagcttggaagcatcc 1917 Query: 285 atttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaagntg 344 || ||||||||||||||||| || || || || || || ||||| | | |||||| | Sbjct: 1916 atctcgttgttgcttcttggagccacaatgactttagcttgctcctctaatgtgaagttt 1857 Query: 345 gtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatgactg 404 | ||| ||||| || ||||||||||| || |||||||||| || |||||||| || || Sbjct: 1856 gcccatttgaattcagggttgatgtagtctctgtacatctctaggatctcgttgtggctc 1797 Query: 405 acaaccccagggttggtgaaattcca 430 || || || ||||| ||||| ||||| Sbjct: 1796 accacacctgggtttgtgaagttcca 1771
>gb|AY048277.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, complete cds Length = 1739 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 1400 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 1341 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 1340 attccatatgcc 1329
>gb|AY042833.1| Arabidopsis thaliana Similar to dTDP-D-glucose 4,6-dehydratase (T30F21.10) mRNA, complete cds Length = 2347 Score = 71.9 bits (36), Expect = 2e-09 Identities = 163/206 (79%) Strand = Plus / Minus Query: 225 atcaaagattccttaatggacagtagctcagggaactctgacttcagctttgacgcgtcc 284 |||| ||| ||||| || || |||||||||||||||||| ||| ||||| || || ||| Sbjct: 2151 atcagagactccttgatagagagtagctcagggaactctttcttgagcttggaagcatcc 2092 Query: 285 atttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaagntg 344 || ||||||||||||||||| || || || || || || ||||| | | |||||| | Sbjct: 2091 atctcgttgttgcttcttggagccacaatgactttagcttgctcctctaatgtgaagttt 2032 Query: 345 gtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatgactg 404 | ||| ||||| || ||||||||||| || |||||||||| || |||||||| || || Sbjct: 2031 gcccatttgaattcagggttgatgtagtctctgtacatctctaggatctcgttgtggctc 1972 Query: 405 acaaccccagggttggtgaaattcca 430 || || || ||||| ||||| ||||| Sbjct: 1971 accacacctgggtttgtgaagttcca 1946
>emb|BX817582.1|CNS0AEDB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL31ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 525 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 144 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 85 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 84 attccatatgcc 73
>emb|BX815784.1|CNS0AAK8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS94ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2309 Score = 71.9 bits (36), Expect = 2e-09 Identities = 163/206 (79%) Strand = Plus / Minus Query: 225 atcaaagattccttaatggacagtagctcagggaactctgacttcagctttgacgcgtcc 284 |||| ||| ||||| || || |||||||||||||||||| ||| ||||| || || ||| Sbjct: 2152 atcagagactccttgatagagagtagctcagggaactctttcttgagcttggaagcatcc 2093 Query: 285 atttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaagntg 344 || ||||||||||||||||| || || || || || || ||||| | | |||||| | Sbjct: 2092 atctcgttgttgcttcttggagccacaatgactttagcttgctcctctaatgtgaagttt 2033 Query: 345 gtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatgactg 404 | ||| ||||| || ||||||||||| || |||||||||| || |||||||| || || Sbjct: 2032 gcccatttgaattcagggttgatgtagtctctgtacatctctaggatctcgttgtggctc 1973 Query: 405 acaaccccagggttggtgaaattcca 430 || || || ||||| ||||| ||||| Sbjct: 1972 accacacctgggtttgtgaagttcca 1947
>gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22G10 genomic sequence, complete sequence Length = 111936 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 104854 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 104795 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 104794 attccatatgcc 104783
>gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete sequence Length = 99960 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 63760 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 63701 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 63700 attccatatgcc 63689
>gb|BT002264.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, complete cds Length = 1497 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| | |||||||||||||| |||||||| || || || ||||| ||||||||||| Sbjct: 1323 gatgtaattcttgtacatctccaatatctcgttgtggctcaccacccctgggttggtgaa 1264 Query: 425 attccatatgcc 436 |||||||||||| Sbjct: 1263 attccatatgcc 1252
>gb|AF359122.1| Pinus sylvestris isolate plus tree E1101 putative dTDP-glucose 4,6-dehydratase gene, partial cds Length = 212 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| ||| ||||||||||||| ||||| || || || |||||||||||||| ||||| Sbjct: 90 gatgtagtccctgtacatctccaggatctcattgtggctaacaaccccagggttcgtgaa 31 Query: 425 attcca 430 |||||| Sbjct: 30 attcca 25
>gb|AF051236.1|AF051236 Picea mariana hypothetical protein (Sb50) mRNA, partial cds Length = 1139 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 365 gatgtattccttgtacatctccagaatctcgttatgactgacaaccccagggttggtgaa 424 |||||| ||| ||||||||||||| |||||||| || || || ||||||||||| ||||| Sbjct: 635 gatgtagtccctgtacatctccaggatctcgttgtggctaaccaccccagggttcgtgaa 576 Query: 425 attcca 430 |||||| Sbjct: 575 attcca 570 Score = 44.1 bits (22), Expect = 0.55 Identities = 69/85 (81%) Strand = Plus / Minus Query: 507 atgttcaccaccttgtcatagcggnctatttttgtgatgaagttccgaggattgcttagg 566 ||||| || ||||||||||||||| || || ||||||||||| ||||| || || Sbjct: 493 atgttgacgaccttgtcatagcgggagatcttggtgatgaagttgcgagggttcgacaga 434 Query: 567 tctgatgatatgggcatcctgactc 591 ||||| || |||||||||||||||| Sbjct: 433 tctgaagaaatgggcatcctgactc 409
>emb|AJ718258.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT4-23-450, cultivar Bright Yellow 2 Length = 373 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 249 agctcagggaactctgacttcagctttgacgcgtccatttcgttgttgcttcttggtgca 308 ||||||||||||||| ||||| |||||| || ||||| |||||||| || | | |||| Sbjct: 110 agctcagggaactctttcttcaactttgatgcatccatctcgttgttactgcgagctgca 51 Query: 309 actataaccttggcctgctctt 330 || || |||||||||||||||| Sbjct: 50 acaattaccttggcctgctctt 29
>ref|NM_112340.2| Arabidopsis thaliana RHM3; catalytic AT3G14790 (RHM3) mRNA, complete cds Length = 2332 Score = 56.0 bits (28), Expect = 1e-04 Identities = 187/241 (77%) Strand = Plus / Minus Query: 282 tccatttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaag 341 ||||| ||||||||||| | ||| ||||| || ||||| ||||| |||| | ||||| Sbjct: 2057 tccatctcgttgttgctccgtggagcaacaatgaccttagcctgttcttccaaattgaag 1998 Query: 342 ntggtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatga 401 ||| ||| ||||| || || | |||||| |||||||||||| | |||||||| || Sbjct: 1997 ttggaccatttgaaatcaggctcgatgtaactcttgtacatctctaatatctcgttgtgg 1938 Query: 402 ctgacaaccccagggttggtgaaattccatatgcccctacaatcccgctttgccatctnt 461 || || || || || |||||||| |||||||| ||||| | || ||| ||||||| Sbjct: 1937 ctcaccactcctggattggtgaagttccatattccccttaggttcctcttcgccatctcg 1878 Query: 462 acagagataggcaagagttcatctaaaattgtcatactgttaggaatgttcaccaccttg 521 | ||||| || ||||||||||||| || ||||| ||||| |||||||||||||| ||| Sbjct: 1877 atcgagattggtaagagttcatctagtatggtcatgctgtttggaatgttcaccactttg 1818 Query: 522 t 522 | Sbjct: 1817 t 1817
>gb|AY142060.1| Arabidopsis thaliana At3g14790/T21E2_4 mRNA, complete cds Length = 1995 Score = 56.0 bits (28), Expect = 1e-04 Identities = 187/241 (77%) Strand = Plus / Minus Query: 282 tccatttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaag 341 ||||| ||||||||||| | ||| ||||| || ||||| ||||| |||| | ||||| Sbjct: 1904 tccatctcgttgttgctccgtggagcaacaatgaccttagcctgttcttccaaattgaag 1845 Query: 342 ntggtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatga 401 ||| ||| ||||| || || | |||||| |||||||||||| | |||||||| || Sbjct: 1844 ttggaccatttgaaatcaggctcgatgtaactcttgtacatctctaatatctcgttgtgg 1785 Query: 402 ctgacaaccccagggttggtgaaattccatatgcccctacaatcccgctttgccatctnt 461 || || || || || |||||||| |||||||| ||||| | || ||| ||||||| Sbjct: 1784 ctcaccactcctggattggtgaagttccatattccccttaggttcctcttcgccatctcg 1725 Query: 462 acagagataggcaagagttcatctaaaattgtcatactgttaggaatgttcaccaccttg 521 | ||||| || ||||||||||||| || ||||| ||||| |||||||||||||| ||| Sbjct: 1724 atcgagattggtaagagttcatctagtatggtcatgctgtttggaatgttcaccactttg 1665 Query: 522 t 522 | Sbjct: 1664 t 1664
>gb|AY078958.1| Arabidopsis thaliana AT3g14790/T21E2_4 mRNA, complete cds Length = 2332 Score = 56.0 bits (28), Expect = 1e-04 Identities = 187/241 (77%) Strand = Plus / Minus Query: 282 tccatttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaag 341 ||||| ||||||||||| | ||| ||||| || ||||| ||||| |||| | ||||| Sbjct: 2057 tccatctcgttgttgctccgtggagcaacaatgaccttagcctgttcttccaaattgaag 1998 Query: 342 ntggtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatga 401 ||| ||| ||||| || || | |||||| |||||||||||| | |||||||| || Sbjct: 1997 ttggaccatttgaaatcaggctcgatgtaactcttgtacatctctaatatctcgttgtgg 1938 Query: 402 ctgacaaccccagggttggtgaaattccatatgcccctacaatcccgctttgccatctnt 461 || || || || || |||||||| |||||||| ||||| | || ||| ||||||| Sbjct: 1937 ctcaccactcctggattggtgaagttccatattccccttaggttcctcttcgccatctcg 1878 Query: 462 acagagataggcaagagttcatctaaaattgtcatactgttaggaatgttcaccaccttg 521 | ||||| || ||||||||||||| || ||||| ||||| |||||||||||||| ||| Sbjct: 1877 atcgagattggtaagagttcatctagtatggtcatgctgtttggaatgttcaccactttg 1818 Query: 522 t 522 | Sbjct: 1817 t 1817
>dbj|AP002061.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T21E2 Length = 47466 Score = 56.0 bits (28), Expect = 1e-04 Identities = 187/241 (77%) Strand = Plus / Minus Query: 282 tccatttcgttgttgcttcttggtgcaactataaccttggcctgctcttngagcgtgaag 341 ||||| ||||||||||| | ||| ||||| || ||||| ||||| |||| | ||||| Sbjct: 10282 tccatctcgttgttgctccgtggagcaacaatgaccttagcctgttcttccaaattgaag 10223 Query: 342 ntggtccacttgaagtccgggttgatgtattccttgtacatctccagaatctcgttatga 401 ||| ||| ||||| || || | |||||| |||||||||||| | |||||||| || Sbjct: 10222 ttggaccatttgaaatcaggctcgatgtaactcttgtacatctctaatatctcgttgtgg 10163 Query: 402 ctgacaaccccagggttggtgaaattccatatgcccctacaatcccgctttgccatctnt 461 || || || || || |||||||| |||||||| ||||| | || ||| ||||||| Sbjct: 10162 ctcaccactcctggattggtgaagttccatattccccttaggttcctcttcgccatctcg 10103 Query: 462 acagagataggcaagagttcatctaaaattgtcatactgttaggaatgttcaccaccttg 521 | ||||| || ||||||||||||| || ||||| ||||| |||||||||||||| ||| Sbjct: 10102 atcgagattggtaagagttcatctagtatggtcatgctgtttggaatgttcaccactttg 10043 Query: 522 t 522 | Sbjct: 10042 t 10042
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.035 Identities = 77/95 (81%) Strand = Plus / Minus Query: 513 accaccttgtcatagcggnctatttttgtgatgaagttccgaggattgcttaggtctgat 572 ||||| || ||||| ||| | ||||| ||||||||||| ||||||||| ||| || ||| Sbjct: 27730906 accactttatcataccgggcgattttagtgatgaagttgcgaggattggatagatcggat 27730847 Query: 573 gatatgggcatcctgactctaagagtacagacatt 607 || || |||||||| || | ||| ||||| ||||| Sbjct: 27730846 gaaataggcatccttacacgaagtgtacatacatt 27730812 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 294 ttgcttcttggtgcaactataaccttggcctgctc 328 |||||||| ||||||||||| |||||||| ||||| Sbjct: 27731125 ttgcttctcggtgcaactatgaccttggcttgctc 27731091
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 48.1 bits (24), Expect = 0.035 Identities = 77/95 (81%) Strand = Plus / Minus Query: 513 accaccttgtcatagcggnctatttttgtgatgaagttccgaggattgcttaggtctgat 572 ||||| || ||||| ||| | ||||| ||||||||||| ||||||||| ||| || ||| Sbjct: 16239 accactttatcataccgggcgattttagtgatgaagttgcgaggattggatagatcggat 16180 Query: 573 gatatgggcatcctgactctaagagtacagacatt 607 || || |||||||| || | ||| ||||| ||||| Sbjct: 16179 gaaataggcatccttacacgaagtgtacatacatt 16145 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 294 ttgcttcttggtgcaactataaccttggcctgctc 328 |||||||| ||||||||||| |||||||| ||||| Sbjct: 16458 ttgcttctcggtgcaactatgaccttggcttgctc 16424
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 48.1 bits (24), Expect = 0.035 Identities = 77/95 (81%) Strand = Plus / Minus Query: 513 accaccttgtcatagcggnctatttttgtgatgaagttccgaggattgcttaggtctgat 572 ||||| || ||||| ||| | ||||| ||||||||||| ||||||||| ||| || ||| Sbjct: 116772 accactttatcataccgggcgattttagtgatgaagttgcgaggattggatagatcggat 116713 Query: 573 gatatgggcatcctgactctaagagtacagacatt 607 || || |||||||| || | ||| ||||| ||||| Sbjct: 116712 gaaataggcatccttacacgaagtgtacatacatt 116678 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 294 ttgcttcttggtgcaactataaccttggcctgctc 328 |||||||| ||||||||||| |||||||| ||||| Sbjct: 116991 ttgcttctcggtgcaactatgaccttggcttgctc 116957
>dbj|AK071766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H09, full insert sequence Length = 1447 Score = 48.1 bits (24), Expect = 0.035 Identities = 77/95 (81%) Strand = Plus / Minus Query: 513 accaccttgtcatagcggnctatttttgtgatgaagttccgaggattgcttaggtctgat 572 ||||| || ||||| ||| | ||||| ||||||||||| ||||||||| ||| || ||| Sbjct: 719 accactttatcataccgggcgattttagtgatgaagttgcgaggattggatagatcggat 660 Query: 573 gatatgggcatcctgactctaagagtacagacatt 607 || || |||||||| || | ||| ||||| ||||| Sbjct: 659 gaaataggcatccttacacgaagtgtacatacatt 625 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 294 ttgcttcttggtgcaactataaccttggcctgctc 328 |||||||| ||||||||||| |||||||| ||||| Sbjct: 938 ttgcttctcggtgcaactatgaccttggcttgctc 904
>dbj|AP004513.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01O22, TM0043a, complete sequence Length = 54726 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 ctgtttggctcaaagacattcttgat 226 |||||||| ||||||||||||||||| Sbjct: 7579 ctgtttgggtcaaagacattcttgat 7604
>ref|XM_806362.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053503925.40) partial mRNA Length = 954 Score = 42.1 bits (21), Expect = 2.2 Identities = 50/60 (83%) Strand = Plus / Minus Query: 492 gtcatactgttaggaatgttcaccaccttgtcatagcggnctatttttgtgatgaagttc 551 ||||||||||| || |||||||||||||| || ||| | ||||| |||||||||||| Sbjct: 605 gtcatactgttcgggatgttcaccaccttctcgtagttagcaattttggtgatgaagttc 546
>gb|AC174233.4| Pan troglodytes BAC clone CH251-560K10 from chromosome unknown, complete sequence Length = 179813 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 ttggccacagctgccaccgtg 127 ||||||||||||||||||||| Sbjct: 34634 ttggccacagctgccaccgtg 34614
>emb|AJ272265.1|HSA272265 Homo sapiens SPP2 gene for secreted phosphoprotein 24 precursor, exons 1-8 Length = 30000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 ttggccacagctgccaccgtg 127 ||||||||||||||||||||| Sbjct: 28261 ttggccacagctgccaccgtg 28241
>gb|AC155722.9| Mus musculus 6 BAC RP24-204J8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198481 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 tcaaagacattcttgatcaaa 230 ||||||||||||||||||||| Sbjct: 152235 tcaaagacattcttgatcaaa 152255
>gb|AC006037.2| Homo sapiens BAC clone RP11-263G22 from 2, complete sequence Length = 108711 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 ttggccacagctgccaccgtg 127 ||||||||||||||||||||| Sbjct: 51740 ttggccacagctgccaccgtg 51760
>gb|AC132216.7| Homo sapiens chromosome 11, clone RP13-786C16, complete sequence Length = 174373 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 atgaatcttcaattagtagaa 194 ||||||||||||||||||||| Sbjct: 136452 atgaatcttcaattagtagaa 136472
>ref|NM_104978.3| Arabidopsis thaliana NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) AT1G63000 (NRS/ER) mRNA, complete cds Length = 1265 Score = 40.1 bits (20), Expect = 8.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 376 tgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaatt 427 |||||||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 826 tgtacatctccaagatctcgttgtggctcacaacacccgggttagtgaaatt 775
>ref|XM_640708.1| Dictyostelium discoideum hypothetical protein (DDB0216852), partial mRNA Length = 318 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cttcttggtgcaactataac 316 |||||||||||||||||||| Sbjct: 53 cttcttggtgcaactataac 34
>ref|XM_628843.1| Dictyostelium discoideum hypothetical protein (DDB0215060), partial mRNA Length = 318 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cttcttggtgcaactataac 316 |||||||||||||||||||| Sbjct: 53 cttcttggtgcaactataac 34
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgttgttgcttcttggtgca 308 |||||||||||||||||||| Sbjct: 60791 cgttgttgcttcttggtgca 60810
>gb|AY513232.1| Arabidopsis thaliana 3,5-epimerase/4-reductase (NRS/ER) mRNA, complete cds Length = 906 Score = 40.1 bits (20), Expect = 8.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 376 tgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaatt 427 |||||||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 709 tgtacatctccaagatctcgttgtggctcacaacacccgggttagtgaaatt 658
>emb|Z98950.1|HS507I15 Human DNA sequence from clone RP3-507I15 on chromosome Xq26.3-27.3 Contains a ribosomal protein L36a (RPL36A) pseudogene, complete sequence Length = 123556 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aatcttcaattagtagaaac 196 |||||||||||||||||||| Sbjct: 76749 aatcttcaattagtagaaac 76730
>emb|AL050308.9|HSG164F24 Human DNA sequence from clone GS1-164F24 on chromosome Xq26.3-27.3 Contains a NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) (NDUFB3) pseudogene and part of a novel gene, complete sequence Length = 213084 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aatcttcaattagtagaaac 196 |||||||||||||||||||| Sbjct: 70371 aatcttcaattagtagaaac 70390
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ttccttgtacatctccagaa 390 |||||||||||||||||||| Sbjct: 2650294 ttccttgtacatctccagaa 2650313
>gb|AF332445.1| Arabidopsis thaliana clone C00141 (e) unknown protein (At1g63000) mRNA, complete cds Length = 906 Score = 40.1 bits (20), Expect = 8.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 376 tgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaatt 427 |||||||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 709 tgtacatctccaagatctcgttgtggctcacaacacccgggttagtgaaatt 658
>gb|AF387005.1|AF387005 Arabidopsis thaliana Unknown protein (F16P17.17) mRNA, complete cds Length = 1230 Score = 40.1 bits (20), Expect = 8.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 376 tgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaatt 427 |||||||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 786 tgtacatctccaagatctcgttgtggctcacaacacccgggttagtgaaatt 735
>emb|BX815284.1|CNS0AAH5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS49ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1224 Score = 40.1 bits (20), Expect = 8.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 376 tgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaatt 427 |||||||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 826 tgtacatctccaagatctcgttgtggctcacaacacccgggttagtgaaatt 775
>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 98412 Score = 40.1 bits (20), Expect = 8.6 Identities = 44/52 (84%) Strand = Plus / Minus Query: 376 tgtacatctccagaatctcgttatgactgacaaccccagggttggtgaaatt 427 |||||||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 70029 tgtacatctccaagatctcgttgtggctcacaacacccgggttagtgaaatt 69978
>dbj|AB020755.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1 Length = 81672 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ttgatcaaagattccttaat 241 |||||||||||||||||||| Sbjct: 72157 ttgatcaaagattccttaat 72176
>gb|AC008109.6|AC008109 Homo sapiens chromosome 18, clone RP11-476K15, complete sequence Length = 166819 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tgtcacatgaatcttcaatt 187 |||||||||||||||||||| Sbjct: 134230 tgtcacatgaatcttcaatt 134249
>emb|AL929059.5| Mouse DNA sequence from clone RP23-437L13 on chromosome 2, complete sequence Length = 107108 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 gttgttgcttcttggtgcaa 309 |||||||||||||||||||| Sbjct: 41238 gttgttgcttcttggtgcaa 41257
>dbj|AP005119.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-288C17, complete sequences Length = 143259 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 tgtcacatgaatcttcaatt 187 |||||||||||||||||||| Sbjct: 126883 tgtcacatgaatcttcaatt 126864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,432,686 Number of Sequences: 3902068 Number of extensions: 4432686 Number of successful extensions: 73459 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73290 Number of HSP's gapped (non-prelim): 163 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)