>Y2227_MYCTU (Q10511) Hypothetical protein Rv2227/MT2286|
          Length = 233

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 542 PDPSGDWTVLSHASGSVWKRGDTAAQVMGSSNRWNALESD 423
           PD   DW    HA+G       TA  +   +N WNAL  D
Sbjct: 103 PDSLDDWLASCHAAGQT---RSTALMLKYGTNDWNALHQD 139

>PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
           (CGI-PDE B) (CGIPDE1) (Fragment)
          Length = 799

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 242 GLIIHMILPSPQLRRQAAACSLIAQHLVLRWIQRQGQNCW 361
           GL      P+PQLRR + A SL+      RW +  G+  +
Sbjct: 119 GLSGRTSFPTPQLRRSSGASSLLTNEHCSRWDRSSGKRSY 158

>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)|
          Length = 1687

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
 Frame = +2

Query: 245 LIIHMILPSPQLRRQAAACSLI---AQHLVLRWIQRQGQNCWILFQCEE*AYVCRLAQSW 415
           L +HM   +  LR Q   CS     A  L    ++ QG++      CE  A+ C+     
Sbjct: 472 LRVHMRKHAGDLRYQCNQCSYRCHRADQLSSHKLRHQGKS----LMCEVCAFACKRKYEL 527

Query: 416 LQHQTPGHSSGLKNP*PEQPYHHVSTPTLKHD*VLS 523
            +H    H  G   P P  P H+ S  +     VLS
Sbjct: 528 QKHMASQHHPG--TPSPLYPCHYCSYQSRHKQAVLS 561

>RECA_LACJO (P62216) Protein recA (Recombinase A)|
          Length = 360

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 542 PDPSGDWTVLSHASGSVWKRGDTAAQV 462
           P+ SG  TV  HA   V KRG TAA +
Sbjct: 67  PESSGKTTVALHAVAEVQKRGGTAAYI 93

>HEMH_CAUCR (P57777) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 347

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 406 GQPTNVSLLFALKQDPAVLPLALDPAQHQV 317
           G PTN+ LLF+    P  + LA DP Q QV
Sbjct: 181 GSPTNIRLLFSAHGLPEKVILAGDPYQKQV 210

>RECA_LACAC (Q5FL82) Protein recA (Recombinase A)|
          Length = 363

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 542 PDPSGDWTVLSHASGSVWKRGDTAAQV 462
           P+ SG  TV  HA   V KRG TAA +
Sbjct: 67  PESSGKTTVALHAVAEVQKRGGTAAYI 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,061,318
Number of Sequences: 219361
Number of extensions: 1600702
Number of successful extensions: 3703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3702
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)