ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106184.1| Zea mays PCO106740 mRNA sequence 52 0.002
2dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
3dbj|AK066448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
4dbj|AK061625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
5gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom... 46 0.12
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.12
7gb|AC146182.3| Pan troglodytes BAC clone CH251-540L24 from Y, co... 46 0.12
8gb|AC146214.2| Pan troglodytes BAC clone CH251-295K11 from Y, co... 46 0.12
9dbj|BS000626.2| Pan troglodytes chromosome Y clone: PTB-081L20, ... 46 0.12
10gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 46 0.12
11gb|AY224502.1| Oryza sativa (japonica cultivar-group) isolate 31... 46 0.12
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
13gb|AC006382.3|AC006382 Homo sapiens clone RP11-494J4, complete s... 46 0.12
14gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.47
15gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 44 0.47
16gb|AC087385.5| Homo sapiens chromosome 15, clone RP11-745A24, co... 44 0.47
17gb|AC107241.4| Homo sapiens chromosome 15, clone CTD-2501E16, co... 44 0.47
18dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 44 0.47
19gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.47
20gb|AC154091.1| Homo sapiens chromosome 11 clone fa0692, complete... 42 1.9
21gb|AC160860.2| Homo sapiens chromosome 11 clone WI2-3817J24, com... 42 1.9
22gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, compl... 42 1.9
23emb|AL035704.9|HS74M1 Human DNA sequence from clone RP1-74M1 on ... 42 1.9
24gb|AC131960.1| Drosophila pseudoobscura FOSMID DPSF1-548A6 (Chi... 42 1.9
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
26dbj|AP007216.1| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.9
27emb|CT573038.4| Wallaby DNA sequence from clone MEKBa-230O16, co... 42 1.9
28gb|AY164391.1| Uncultured gamma proteobacterium clone DLIB-12 16... 40 7.4
29gb|AC146082.3| Pan troglodytes BAC clone RP43-55G24 from 7, comp... 40 7.4
30gb|AY547898.1| Uncultured bacterium clone U47_13p1% 16S ribosoma... 40 7.4
31gb|AY547897.1| Uncultured bacterium clone U1II_13p1% 16S ribosom... 40 7.4
32gb|DQ490024.1| Uncultured bacterium clone ODP-32B-02 16S ribosom... 40 7.4
33gb|AC122471.4| Mus musculus BAC clone RP24-322M5 from chromosome... 40 7.4
34gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence 40 7.4
35gb|DQ453268.1| Uncultured Piscirickettsiaceae bacterium clone U1... 40 7.4
36gb|DQ453236.1| Uncultured Piscirickettsiaceae bacterium clone A7... 40 7.4
37gb|AC145450.4| Mus musculus strain C57BL/6J clone rp23-430i3, co... 40 7.4
38emb|AL591981.1| Listeria monocytogenes strain EGD, complete geno... 40 7.4
39emb|AL031747.9|PFMAL1P4 Plasmodium falciparum DNA from MAL1P4, c... 40 7.4
40gb|AY226282.1| Uncultured gamma proteobacterium clone DBBB-12 16... 40 7.4
41gb|AY226259.1| Uncultured gamma proteobacterium clone BBBB-59 16... 40 7.4
42gb|AF449225.1| Uncultured gamma proteobacterium clone R76-B23 16... 40 7.4
43gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold 40 7.4
44gb|DQ390450.1| Thiovibrio halophilus strain HL 5 16S ribosomal R... 40 7.4
45gb|AC156637.2| Mus musculus BAC clone RP24-241I18 from chromosom... 40 7.4
46dbj|AB213180.1| Uncultured bacterium gene for 16S rRNA, partial ... 40 7.4
47gb|AC139993.16| Mus musculus chromosome 12, clone RP23-67O10, co... 40 7.4
48gb|AY216451.1| Uncultured bacterium clone KM53 16S ribosomal RNA... 40 7.4
49gb|AC018646.3|AC018646 Homo sapiens chromosome 7 clone RP11-344L... 40 7.4
50emb|AJ237758.1|TSP237758 Thiomicrospira sp. Milos-T2 16S rRNA ge... 40 7.4
51gb|AC008154.6|AC008154 Homo sapiens clone RPC11-98D12 from 7q31,... 40 7.4
52emb|AJ879931.1| Uncultured gamma proteobacterium 16S rRNA gene 40 7.4
53gb|AF082328.1|AF082328 Thiomicrospira sp. strain Milos T-2 16S r... 40 7.4
54gb|AC163278.5| Mus musculus BAC clone RP24-281A21 from chromosom... 40 7.4
55gb|AF013975.1|AF013975 Thiomicrospira sp. Ch-1 16S ribosomal RNA... 40 7.4
56gb|AF013974.1|AF013974 Thiomicrospira sp. JB-A2 16S ribosomal RN... 40 7.4
57gb|AF013973.1|AF013973 Thiomicrospira sp. Art-3 16S ribosomal RN... 40 7.4
58gb|AF013972.1|AF013972 Thiomicrospira sp. JB-B2 16S ribosomal RN... 40 7.4
59gb|DQ270624.1| Uncultured bacterium clone LC1133B-148 16S riboso... 40 7.4
60gb|DQ270622.1| Uncultured bacterium clone LC1133B-127 16S riboso... 40 7.4
61gb|DQ270608.1| Uncultured bacterium clone LC1537B-12 16S ribosom... 40 7.4
62emb|AL732309.9| Mouse DNA sequence from clone RP23-132N23 on chr... 40 7.4
63gb|DQ228563.1| Uncultured bacterium clone LC1149b154 16S ribosom... 40 7.4
64gb|DQ228561.1| Uncultured bacterium clone LC1149b99 16S ribosoma... 40 7.4 
>gb|AY106184.1| Zea mays PCO106740 mRNA sequence
          Length = 1041

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                       
Query: 249 tcattcacatgattcttcccagtcctcaacttcgacgtcaggctgcagcttgctcactga 308
           ||||||||| | |||||||||||| || || || || || |||||||||||| |||| ||
Sbjct: 759 tcattcacaagcttcttcccagtcgtcgacctctacatccggctgcagcttggtcaccga 700

                     
Query: 309 ttgcccagca 318
           | ||||||||
Sbjct: 699 tggcccagca 690
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 76/93 (81%)
 Strand = Plus / Plus

                                                                         
Query: 249   tcattcacatgattcttcccagtcctcaacttcgacgtcaggctgcagcttgctcactga 308
             ||||||||| | ||||||||| || || |||||||| |||||||||| ||| || || | 
Sbjct: 39274 tcattcacaagcttcttcccaatcatccacttcgacttcaggctgcatcttactaaccgg 39333

                                              
Query: 309   ttgcccagcacttggtgctgcgctggatccagc 341
             | || ||| ||||||  ||||||||||| ||||
Sbjct: 39334 tggcgcagtacttggccctgcgctggatacagc 39366



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 421   gcatcagactccagggcattccagcggtt 449
             ||||| ||||||||||| |||||||||||
Sbjct: 39419 gcatcggactccagggcgttccagcggtt 39447
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>dbj|AK066448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060O14, full
            insert sequence
          Length = 2778

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 76/93 (81%)
 Strand = Plus / Minus

                                                                        
Query: 249  tcattcacatgattcttcccagtcctcaacttcgacgtcaggctgcagcttgctcactga 308
            ||||||||| | ||||||||| || || |||||||| |||||||||| ||| || || | 
Sbjct: 2544 tcattcacaagcttcttcccaatcatccacttcgacttcaggctgcatcttactaaccgg 2485

                                             
Query: 309  ttgcccagcacttggtgctgcgctggatccagc 341
            | || ||| ||||||  ||||||||||| ||||
Sbjct: 2484 tggcgcagtacttggccctgcgctggatacagc 2452



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 421  gcatcagactccagggcattccagcggtt 449
            ||||| ||||||||||| |||||||||||
Sbjct: 2399 gcatcggactccagggcgttccagcggtt 2371
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>dbj|AK061625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D01, full
           insert sequence
          Length = 724

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 76/93 (81%)
 Strand = Plus / Minus

                                                                       
Query: 249 tcattcacatgattcttcccagtcctcaacttcgacgtcaggctgcagcttgctcactga 308
           ||||||||| | ||||||||| || || |||||||| |||||||||| ||| || || | 
Sbjct: 487 tcattcacaagcttcttcccaatcatccacttcgacttcaggctgcatcttactaaccgg 428

                                            
Query: 309 ttgcccagcacttggtgctgcgctggatccagc 341
           | || ||| ||||||  ||||||||||| ||||
Sbjct: 427 tggcgcagtacttggccctgcgctggatacagc 395



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 421 gcatcagactccagggcattccagcggtt 449
           ||||| ||||||||||| |||||||||||
Sbjct: 342 gcatcggactccagggcgttccagcggtt 314
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>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
             sequence
          Length = 150743

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                    
Query: 45    actgtgctgttaaagaacacaggaaatctgagaagggttcattgtttatttcatg 99
             |||||| || ||||| || || |||||||||||||||||  ||||||||| ||||
Sbjct: 35126 actgtgatgataaagtactcaagaaatctgagaagggtttgttgtttattacatg 35180



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 17    tcacaactggatggcacatgccgtgaacac 46
             |||||||| ||||||||||||||| |||||
Sbjct: 35031 tcacaacttgatggcacatgccgtcaacac 35060
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                       
Query: 45       actgtgctgttaaagaacacaggaaatctgagaagggttcattgtttatttcatg 99
                |||||| || ||||| || || |||||||||||||||||  ||||||||| ||||
Sbjct: 31645541 actgtgatgataaagtactcaagaaatctgagaagggtttgttgtttattacatg 31645487



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 17       tcacaactggatggcacatgccgtgaacac 46
                |||||||| ||||||||||||||| |||||
Sbjct: 31645636 tcacaacttgatggcacatgccgtcaacac 31645607



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 62       cacaggaaatctgagaagggtt 83
                ||||||||||||||||||||||
Sbjct: 10976283 cacaggaaatctgagaagggtt 10976262
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>gb|AC146182.3| Pan troglodytes BAC clone CH251-540L24 from Y, complete sequence
          Length = 251472

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 67     gaaatctgagaagggttcattgtttat 93
              ||||||||||||||||||| |||||||
Sbjct: 240202 gaaatctgagaagggttcactgtttat 240228
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>gb|AC146214.2| Pan troglodytes BAC clone CH251-295K11 from Y, complete sequence
          Length = 172148

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 67   gaaatctgagaagggttcattgtttat 93
            ||||||||||||||||||| |||||||
Sbjct: 9123 gaaatctgagaagggttcactgtttat 9149
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>dbj|BS000626.2| Pan troglodytes chromosome Y clone: PTB-081L20, complete sequence
          Length = 185894

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 67    gaaatctgagaagggttcattgtttat 93
             ||||||||||||||||||| |||||||
Sbjct: 96648 gaaatctgagaagggttcactgtttat 96622
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 67       gaaatctgagaagggttcattgtttat 93
                ||||||||||||||||||| |||||||
Sbjct: 19793736 gaaatctgagaagggttcactgtttat 19793762
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>gb|AY224502.1| Oryza sativa (japonica cultivar-group) isolate 31150 TF-like protein
            mRNA, partial cds
          Length = 3052

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 74/91 (81%)
 Strand = Plus / Minus

                                                                        
Query: 251  attcacatgattcttcccagtcctcaacttcgacgtcaggctgcagcttgctcactgatt 310
            ||||||| | ||||||||| || || |||||||| |||||||||| ||| || || | | 
Sbjct: 3052 attcacaagcttcttcccaatcatccacttcgacttcaggctgcatcttactaaccggtg 2993

                                           
Query: 311  gcccagcacttggtgctgcgctggatccagc 341
            || ||| ||||||  ||||||||||| ||||
Sbjct: 2992 gcgcagtacttggccctgcgctggatacagc 2962



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 421  gcatcagactccagggcattccagcggtt 449
            ||||| ||||||||||| |||||||||||
Sbjct: 2909 gcatcggactccagggcgttccagcggtt 2881
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                       
Query: 45       actgtgctgttaaagaacacaggaaatctgagaagggttcattgtttatttcatg 99
                |||||| || ||||| || || |||||||||||||||||  ||||||||| ||||
Sbjct: 31736057 actgtgatgataaagtactcaagaaatctgagaagggtttgttgtttattacatg 31736003



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 17       tcacaactggatggcacatgccgtgaacac 46
                |||||||| ||||||||||||||| |||||
Sbjct: 31736152 tcacaacttgatggcacatgccgtcaacac 31736123



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 62       cacaggaaatctgagaagggtt 83
                ||||||||||||||||||||||
Sbjct: 10973046 cacaggaaatctgagaagggtt 10973025
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>gb|AC006382.3|AC006382 Homo sapiens clone RP11-494J4, complete sequence
          Length = 162810

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 67    gaaatctgagaagggttcattgtttat 93
             ||||||||||||||||||| |||||||
Sbjct: 87496 gaaatctgagaagggttcactgtttat 87470
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>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OJ1145F05, from chromosome 3, complete sequence
          Length = 127348

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 62   cacaggaaatctgagaagggtt 83
            ||||||||||||||||||||||
Sbjct: 6084 cacaggaaatctgagaagggtt 6105
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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 62     cacaggaaatctgagaagggtt 83
              ||||||||||||||||||||||
Sbjct: 156839 cacaggaaatctgagaagggtt 156860
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>gb|AC087385.5| Homo sapiens chromosome 15, clone RP11-745A24, complete sequence
          Length = 190890

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 121  cagccaactggcaacagccagg 142
            ||||||||||||||||||||||
Sbjct: 8834 cagccaactggcaacagccagg 8855
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>gb|AC107241.4| Homo sapiens chromosome 15, clone CTD-2501E16, complete sequence
          Length = 105583

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   cagccaactggcaacagccagg 142
             ||||||||||||||||||||||
Sbjct: 81820 cagccaactggcaacagccagg 81841
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 316    gcacttggtgctgcgctggatc 337
              ||||||||||||||||||||||
Sbjct: 327787 gcacttggtgctgcgctggatc 327766
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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 62    cacaggaaatctgagaagggtt 83
             ||||||||||||||||||||||
Sbjct: 19768 cacaggaaatctgagaagggtt 19747
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>gb|AC154091.1| Homo sapiens chromosome 11 clone fa0692, complete sequence
          Length = 40524

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 450   tgaagaacccatgacctgagcagcc 474
             |||||||||| ||||||||||||||
Sbjct: 27214 tgaagaacccctgacctgagcagcc 27190
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>gb|AC160860.2| Homo sapiens chromosome 11 clone WI2-3817J24, complete sequence
          Length = 40103

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 450   tgaagaacccatgacctgagcagcc 474
             |||||||||| ||||||||||||||
Sbjct: 39341 tgaagaacccctgacctgagcagcc 39365
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>gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, complete sequence
          Length = 250903

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 42    aacactgtgctgttaaagaacacag 66
             ||||||||||||| |||||||||||
Sbjct: 51129 aacactgtgctgtcaaagaacacag 51153
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>emb|AL035704.9|HS74M1 Human DNA sequence from clone RP1-74M1 on chromosome 1p34.3-36.13
             Contains the 3' end of the EPHB2 gene for EphB2, two novel
             genes and a CpG island, complete sequence
          Length = 113956

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 496   gaccctgaagcatgactaagt 516
             |||||||||||||||||||||
Sbjct: 86735 gaccctgaagcatgactaagt 86715
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>gb|AC131960.1| Drosophila pseudoobscura  FOSMID DPSF1-548A6 (Children's Hospital
             Oakland Research Institute Drosophila pseudoobscura FOSMID
             Library) complete sequence
          Length = 46234

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 403   ggcccagagctggttgcagcatcag 427
             |||||||||||| ||||||||||||
Sbjct: 19724 ggcccagagctgtttgcagcatcag 19700
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 421     gcatcagactccagggcattccagcggtt 449
               ||||| ||||||||||| |||||||||||
Sbjct: 7931901 gcatcggactccagggcgttccagcggtt 7931929
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>dbj|AP007216.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C9, complete
             sequence
          Length = 100462

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 450   tgaagaacccatgacctgagcagcc 474
             |||||||||| ||||||||||||||
Sbjct: 71215 tgaagaacccctgacctgagcagcc 71239
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>emb|CT573038.4| Wallaby DNA sequence from clone MEKBa-230O16, complete sequence
          Length = 142635

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    gagtcatcttgaccaaactac 238
              |||||||||||||||||||||
Sbjct: 118077 gagtcatcttgaccaaactac 118097
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>gb|AY164391.1| Uncultured gamma proteobacterium clone DLIB-12 16S ribosomal RNA
           gene, partial sequence
          Length = 699

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 580 gagcagccaactggcaacag 599
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>gb|AC146082.3| Pan troglodytes BAC clone RP43-55G24 from 7, complete sequence
          Length = 189996

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    aaatactcacaactggatgg 30
             ||||||||||||||||||||
Sbjct: 56044 aaatactcacaactggatgg 56025
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>gb|AY547898.1| Uncultured bacterium clone U47_13p1% 16S ribosomal RNA gene,
           partial sequence
          Length = 702

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 614 gagcagccaactggcaacag 633
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>gb|AY547897.1| Uncultured bacterium clone U1II_13p1% 16S ribosomal RNA gene,
           partial sequence
          Length = 680

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 580 gagcagccaactggcaacag 599
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>gb|DQ490024.1| Uncultured bacterium clone ODP-32B-02 16S ribosomal RNA gene, partial
            sequence
          Length = 1518

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1260 gagcagccaactggcaacag 1279
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>gb|AC122471.4| Mus musculus BAC clone RP24-322M5 from chromosome 2, complete sequence
          Length = 206592

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    aagaacacaggaaatctgag 76
             ||||||||||||||||||||
Sbjct: 61889 aagaacacaggaaatctgag 61908
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>gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence
          Length = 257036

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    gtttatttcatggcaaagatacct 111
             ||||||| ||||||||||||||||
Sbjct: 31216 gtttattgcatggcaaagatacct 31193
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>gb|DQ453268.1| Uncultured Piscirickettsiaceae bacterium clone U15.6_4_1 16S
           ribosomal RNA gene, partial sequence
          Length = 442

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 271 gagcagccaactggcaacag 290
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>gb|DQ453236.1| Uncultured Piscirickettsiaceae bacterium clone A7.8_33_1 16S
           ribosomal RNA gene, partial sequence
          Length = 446

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 289 gagcagccaactggcaacag 308
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>gb|AC145450.4| Mus musculus strain C57BL/6J clone rp23-430i3, complete sequence
          Length = 208207

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     aagaacacaggaaatctgag 76
              ||||||||||||||||||||
Sbjct: 162557 aagaacacaggaaatctgag 162538
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>emb|AL591981.1| Listeria monocytogenes strain EGD, complete genome, segment 9/12
          Length = 347050

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 82     ttcattgtttatttcatggcaaag 105
              ||||||||||||||||| ||||||
Sbjct: 225937 ttcattgtttatttcattgcaaag 225960
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>emb|AL031747.9|PFMAL1P4 Plasmodium falciparum DNA from MAL1P4, complete sequence
          Length = 66442

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tgtgctgttaaagaacacag 66
             ||||||||||||||||||||
Sbjct: 39501 tgtgctgttaaagaacacag 39482
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>gb|AY226282.1| Uncultured gamma proteobacterium clone DBBB-12 16S ribosomal RNA
           gene, partial sequence
          Length = 835

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 722 gagcagccaactggcaacag 741
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>gb|AY226259.1| Uncultured gamma proteobacterium clone BBBB-59 16S ribosomal RNA
           gene, partial sequence
          Length = 602

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 482 gagcagccaactggcaacag 501
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>gb|AF449225.1| Uncultured gamma proteobacterium clone R76-B23 16S ribosomal RNA
            gene, partial sequence
          Length = 1462

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1227 gagcagccaactggcaacag 1246
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>gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold
          Length = 444202

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   caaactaccttggtctcatc 250
             ||||||||||||||||||||
Sbjct: 63793 caaactaccttggtctcatc 63812
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>gb|DQ390450.1| Thiovibrio halophilus strain HL 5 16S ribosomal RNA gene, partial
            sequence
          Length = 1420

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1237 gagcagccaactggcaacag 1256
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>gb|AC156637.2| Mus musculus BAC clone RP24-241I18 from chromosome 12, complete
             sequence
          Length = 156014

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    gtttatttcatggcaaagatacct 111
             ||||||| ||||||||||||||||
Sbjct: 61358 gtttattgcatggcaaagatacct 61335
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>dbj|AB213180.1| Uncultured bacterium gene for 16S rRNA, partial sequence, clone:
           Papm3B13
          Length = 884

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 gagcagccaactggcaacag 137
           ||||||||||||||||||||
Sbjct: 730 gagcagccaactggcaacag 749
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>gb|AC139993.16| Mus musculus chromosome 12, clone RP23-67O10, complete sequence
          Length = 239577

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   aggtgatacagtaacagctt 172
             ||||||||||||||||||||
Sbjct: 48416 aggtgatacagtaacagctt 48435
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>gb|AY216451.1| Uncultured bacterium clone KM53 16S ribosomal RNA gene, partial
            sequence
          Length = 1405

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1250 gagcagccaactggcaacag 1269
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>gb|AC018646.3|AC018646 Homo sapiens chromosome 7 clone RP11-344L16, complete sequence
          Length = 184718

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     aaatactcacaactggatgg 30
              ||||||||||||||||||||
Sbjct: 183144 aaatactcacaactggatgg 183163
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>emb|AJ237758.1|TSP237758 Thiomicrospira sp. Milos-T2 16S rRNA gen, partial
          Length = 1422

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1204 gagcagccaactggcaacag 1223
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>gb|AC008154.6|AC008154 Homo sapiens clone RPC11-98D12 from 7q31, complete sequence
          Length = 172241

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aaatactcacaactggatgg 30
             ||||||||||||||||||||
Sbjct: 93195 aaatactcacaactggatgg 93214
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>emb|AJ879931.1| Uncultured gamma proteobacterium 16S rRNA gene
          Length = 1416

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1216 gagcagccaactggcaacag 1235
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>gb|AF082328.1|AF082328 Thiomicrospira sp. strain Milos T-2 16S ribosomal RNA gene, partial
            sequence
          Length = 1423

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1204 gagcagccaactggcaacag 1223
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>gb|AC163278.5| Mus musculus BAC clone RP24-281A21 from chromosome 12, complete sequence
          Length = 188100

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aggtgatacagtaacagctt 172
              ||||||||||||||||||||
Sbjct: 118861 aggtgatacagtaacagctt 118880
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>gb|AF013975.1|AF013975 Thiomicrospira sp. Ch-1 16S ribosomal RNA gene, partial sequence
          Length = 1470

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1237 gagcagccaactggcaacag 1256
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>gb|AF013974.1|AF013974 Thiomicrospira sp. JB-A2 16S ribosomal RNA gene, partial sequence
          Length = 1464

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1237 gagcagccaactggcaacag 1256
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>gb|AF013973.1|AF013973 Thiomicrospira sp. Art-3 16S ribosomal RNA gene, partial sequence
          Length = 1453

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1227 gagcagccaactggcaacag 1246
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>gb|AF013972.1|AF013972 Thiomicrospira sp. JB-B2 16S ribosomal RNA gene, partial sequence
          Length = 1478

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1246 gagcagccaactggcaacag 1265
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>gb|DQ270624.1| Uncultured bacterium clone LC1133B-148 16S ribosomal RNA gene,
            partial sequence
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1228 gagcagccaactggcaacag 1247
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>gb|DQ270622.1| Uncultured bacterium clone LC1133B-127 16S ribosomal RNA gene,
            partial sequence
          Length = 1499

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1244 gagcagccaactggcaacag 1263
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>gb|DQ270608.1| Uncultured bacterium clone LC1537B-12 16S ribosomal RNA gene, partial
            sequence
          Length = 1423

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1248 gagcagccaactggcaacag 1267
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>emb|AL732309.9| Mouse DNA sequence from clone RP23-132N23 on chromosome 2, complete
             sequence
          Length = 221859

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aagaacacaggaaatctgag 76
             ||||||||||||||||||||
Sbjct: 98468 aagaacacaggaaatctgag 98449
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>gb|DQ228563.1| Uncultured bacterium clone LC1149b154 16S ribosomal RNA gene, partial
            sequence
          Length = 1503

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1256 gagcagccaactggcaacag 1275
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>gb|DQ228561.1| Uncultured bacterium clone LC1149b99 16S ribosomal RNA gene, partial
            sequence
          Length = 1448

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gagcagccaactggcaacag 137
            ||||||||||||||||||||
Sbjct: 1228 gagcagccaactggcaacag 1247


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,814,043
Number of Sequences: 3902068
Number of extensions: 4814043
Number of successful extensions: 104760
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104525
Number of HSP's gapped (non-prelim): 235
length of query: 546
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 523
effective length of database: 17,143,297,704
effective search space: 8965944699192
effective search space used: 8965944699192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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