ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033049N14, full insert sequence Length = 1780 Score = 218 bits (110), Expect = 2e-53 Identities = 308/374 (82%) Strand = Plus / Minus Query: 206 agcagctgttgcaacaagcgagctgcaaggcgctgggagacacctcctgcgatacgagaa 265 |||||||| ||||||| ||| || || |||||||| | ||||||||||| | || || Sbjct: 1556 agcagctgctgcaacaggcgggccgcgaggcgctgcgtaacacctcctgcaacccgggag 1497 Query: 266 ccaaacacacgggcttcacgctcttgtagcacctgtacaattggctgcaaaagacttgga 325 |||| || ||||| || |||||||||||||||| |||||||| ||||| | |||| Sbjct: 1496 ccaagaacgcgggcctctggctcttgtagcacctgcacaattggttgcaagatggttggg 1437 Query: 326 tcaaaggtatcagaggatctcaaaagaccccatattctgagaacagtgtctcgtagctcc 385 |||||| ||| |||||||||| ||| ||||||||||||| ||| |||| || ||||| Sbjct: 1436 tcaaagccatccgaggatctcagaaggccccatattctgaaaaccctgtcccgcagctca 1377 Query: 386 aacatttgttcccgctcaacatcacttatcttaaagggtccagctgggtttccattggat 445 | ||||||||||| ||| || |||||||| || ||||| ||||| || ||| ||||| Sbjct: 1376 atcatttgttccctttcagtgtcgcttatcttgaacggtccggctggattaccactggat 1317 Query: 446 attaatggcttcaaaaattctggagctgcattgtatgaaccaatcagtgttccaaaggtg 505 |||||||| || | |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 1316 attaatggtttaagaaattctggagctgcattatacgaatcaatcagcgttccaaaagtg 1257 Query: 506 atggcttctgtgacacgaaccgcttctttcacaacaagcacccttaaattctccccatct 565 ||||||||||||||||||||||||||||||||||| || || | || | ||||||||| Sbjct: 1256 atggcttctgtgacacgaaccgcttctttcacaactaggactcgcaattcctccccatca 1197 Query: 566 ggaccaagtagaag 579 |||||||||||||| Sbjct: 1196 ggaccaagtagaag 1183 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gaaagtatcgtgtgaatttacatg 140 ||||||| |||||||||||||||| Sbjct: 1620 gaaagtaccgtgtgaatttacatg 1597
>dbj|AK059093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C02, full insert sequence Length = 1302 Score = 218 bits (110), Expect = 2e-53 Identities = 308/374 (82%) Strand = Plus / Minus Query: 206 agcagctgttgcaacaagcgagctgcaaggcgctgggagacacctcctgcgatacgagaa 265 |||||||| ||||||| ||| || || |||||||| | ||||||||||| | || || Sbjct: 1173 agcagctgctgcaacaggcgggccgcgaggcgctgcgtaacacctcctgcaacccgggag 1114 Query: 266 ccaaacacacgggcttcacgctcttgtagcacctgtacaattggctgcaaaagacttgga 325 |||| || ||||| || |||||||||||||||| |||||||| ||||| | |||| Sbjct: 1113 ccaagaacgcgggcctctggctcttgtagcacctgcacaattggttgcaagatggttggg 1054 Query: 326 tcaaaggtatcagaggatctcaaaagaccccatattctgagaacagtgtctcgtagctcc 385 |||||| ||| |||||||||| ||| ||||||||||||| ||| |||| || ||||| Sbjct: 1053 tcaaagccatccgaggatctcagaaggccccatattctgaaaaccctgtcccgcagctca 994 Query: 386 aacatttgttcccgctcaacatcacttatcttaaagggtccagctgggtttccattggat 445 | ||||||||||| ||| || |||||||| || ||||| ||||| || ||| ||||| Sbjct: 993 atcatttgttccctttcagtgtcgcttatcttgaacggtccggctggattaccactggat 934 Query: 446 attaatggcttcaaaaattctggagctgcattgtatgaaccaatcagtgttccaaaggtg 505 |||||||| || | |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 933 attaatggtttaagaaattctggagctgcattatacgaatcaatcagcgttccaaaagtg 874 Query: 506 atggcttctgtgacacgaaccgcttctttcacaacaagcacccttaaattctccccatct 565 ||||||||||||||||||||||||||||||||||| || || | || | ||||||||| Sbjct: 873 atggcttctgtgacacgaaccgcttctttcacaactaggactcgcaattcctccccatca 814 Query: 566 ggaccaagtagaag 579 |||||||||||||| Sbjct: 813 ggaccaagtagaag 800 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gaaagtatcgtgtgaatttacatg 140 ||||||| |||||||||||||||| Sbjct: 1237 gaaagtaccgtgtgaatttacatg 1214
>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03, complete sequence Length = 146278 Score = 190 bits (96), Expect = 4e-45 Identities = 237/284 (83%) Strand = Plus / Minus Query: 296 acctgtacaattggctgcaaaagacttggatcaaaggtatcagaggatctcaaaagaccc 355 ||||| |||||||| ||||| | |||| |||||| ||| |||||||||| ||| ||| Sbjct: 61803 acctgcacaattggttgcaagatggttgggtcaaagccatccgaggatctcagaaggccc 61744 Query: 356 catattctgagaacagtgtctcgtagctccaacatttgttcccgctcaacatcacttatc 415 |||||||||| ||| |||| || ||||| | ||||||||||| ||| || |||||| Sbjct: 61743 catattctgaaaaccctgtcccgcagctcaatcatttgttccctttcagtgtcgcttatc 61684 Query: 416 ttaaagggtccagctgggtttccattggatattaatggcttcaaaaattctggagctgca 475 || || ||||| ||||| || ||| ||||||||||||| || | |||||||||||||||| Sbjct: 61683 ttgaacggtccggctggattaccactggatattaatggtttaagaaattctggagctgca 61624 Query: 476 ttgtatgaaccaatcagtgttccaaaggtgatggcttctgtgacacgaaccgcttctttc 535 || || ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 61623 ttatacgaatcaatcagcgttccaaaagtgatggcttctgtgacacgaaccgcttctttc 61564 Query: 536 acaacaagcacccttaaattctccccatctggaccaagtagaag 579 ||||| || || | || | ||||||||| |||||||||||||| Sbjct: 61563 acaactaggactcgcaattcctccccatcaggaccaagtagaag 61520 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gaaagtatcgtgtgaatttacatg 140 ||||||| |||||||||||||||| Sbjct: 62059 gaaagtaccgtgtgaatttacatg 62036
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 190 bits (96), Expect = 4e-45 Identities = 237/284 (83%) Strand = Plus / Minus Query: 296 acctgtacaattggctgcaaaagacttggatcaaaggtatcagaggatctcaaaagaccc 355 ||||| |||||||| ||||| | |||| |||||| ||| |||||||||| ||| ||| Sbjct: 14910887 acctgcacaattggttgcaagatggttgggtcaaagccatccgaggatctcagaaggccc 14910828 Query: 356 catattctgagaacagtgtctcgtagctccaacatttgttcccgctcaacatcacttatc 415 |||||||||| ||| |||| || ||||| | ||||||||||| ||| || |||||| Sbjct: 14910827 catattctgaaaaccctgtcccgcagctcaatcatttgttccctttcagtgtcgcttatc 14910768 Query: 416 ttaaagggtccagctgggtttccattggatattaatggcttcaaaaattctggagctgca 475 || || ||||| ||||| || ||| ||||||||||||| || | |||||||||||||||| Sbjct: 14910767 ttgaacggtccggctggattaccactggatattaatggtttaagaaattctggagctgca 14910708 Query: 476 ttgtatgaaccaatcagtgttccaaaggtgatggcttctgtgacacgaaccgcttctttc 535 || || ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 14910707 ttatacgaatcaatcagcgttccaaaagtgatggcttctgtgacacgaaccgcttctttc 14910648 Query: 536 acaacaagcacccttaaattctccccatctggaccaagtagaag 579 ||||| || || | || | ||||||||| |||||||||||||| Sbjct: 14910647 acaactaggactcgcaattcctccccatcaggaccaagtagaag 14910604 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gaaagtatcgtgtgaatttacatg 140 ||||||| |||||||||||||||| Sbjct: 14911143 gaaagtaccgtgtgaatttacatg 14911120
>gb|AC182813.8| Medicago truncatula clone mth2-69k1, complete sequence Length = 131049 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 20 tctaacatcaaatgaaaataaaa 42 ||||||||||||||||||||||| Sbjct: 128739 tctaacatcaaatgaaaataaaa 128761
>gb|AC124728.5| Mus musculus BAC clone RP23-470C22 from chromosome 6, complete sequence Length = 183845 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 26 atcaaatgaaaataaaacagtac 48 ||||||||||||||||||||||| Sbjct: 125234 atcaaatgaaaataaaacagtac 125212
>gb|AC144540.7| Medicago truncatula clone mth2-19p16, complete sequence Length = 78737 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 20 tctaacatcaaatgaaaataaaa 42 ||||||||||||||||||||||| Sbjct: 53353 tctaacatcaaatgaaaataaaa 53375
>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence Length = 92738 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 20 tctaacatcaaatgaaaataaaa 42 ||||||||||||||||||||||| Sbjct: 57488 tctaacatcaaatgaaaataaaa 57466
>gb|AC183544.3| Pan troglodytes BAC clone CH251-284N17 from chromosome x, complete sequence Length = 161059 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 tcaaatgaaaataaaacagtac 48 |||||||||||||||||||||| Sbjct: 119258 tcaaatgaaaataaaacagtac 119237
>emb|AL360233.21| Human DNA sequence from clone RP11-198D23 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans) and a transcription elongation factor B(SIII) (TCEB2) pseudogene, complete sequence Length = 109816 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 tcaaatgaaaataaaacagtac 48 |||||||||||||||||||||| Sbjct: 50928 tcaaatgaaaataaaacagtac 50949
>gb|AC023745.3| Drosophila melanogaster X BAC RP98-26N1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179312 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 aacatcaaatgaaaataaaaca 44 |||||||||||||||||||||| Sbjct: 109727 aacatcaaatgaaaataaaaca 109706
>gb|AC023693.4| Drosophila melanogaster X BAC RP98-17B23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164969 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 aacatcaaatgaaaataaaaca 44 |||||||||||||||||||||| Sbjct: 14381 aacatcaaatgaaaataaaaca 14360
>gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 of 74 of the complete sequence Length = 314111 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 aacatcaaatgaaaataaaaca 44 |||||||||||||||||||||| Sbjct: 164778 aacatcaaatgaaaataaaaca 164757
>gb|AC133187.3| Mus musculus BAC clone RP23-324O10 from 1, complete sequence Length = 219866 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 85 ttatagttgcttttctttttcctttt 110 ||||| |||||||||||||||||||| Sbjct: 53925 ttataattgcttttctttttcctttt 53950
>gb|AC153022.1| Mus musculus 6 BAC RP23-115M13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201949 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 487 aatcagtgttccaaaggtgatg 508 |||||||||||||||||||||| Sbjct: 102478 aatcagtgttccaaaggtgatg 102499
>gb|AC005213.1| Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence Length = 102431 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttccttttg 111 ||||||||||||||||||||| Sbjct: 81533 ttgcttttctttttccttttg 81513
>gb|AC107868.9| Mus musculus chromosome 17, clone RP23-405A17, complete sequence Length = 193624 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 tatagttgcttttctttttcc 106 ||||||||||||||||||||| Sbjct: 183124 tatagttgcttttctttttcc 183104
>gb|U41276.1| Caenorhabditis elegans cosmid C52B11, complete sequence Length = 41039 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 caaatgaaaataaaacagtac 48 ||||||||||||||||||||| Sbjct: 38784 caaatgaaaataaaacagtac 38764
>ref|XM_422333.1| PREDICTED: Gallus gallus similar to estrogen receptor binding protein (LOC424493), mRNA Length = 3363 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 22 taacatcaaatgaaaataaaacagt 46 ||||| ||||||||||||||||||| Sbjct: 1700 taacaccaaatgaaaataaaacagt 1724
>gb|AC109204.21| Mus musculus chromosome 17, clone RP23-55J9, complete sequence Length = 245496 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tatagttgcttttctttttcc 106 ||||||||||||||||||||| Sbjct: 239582 tatagttgcttttctttttcc 239602
>gb|AC113038.14| Mus musculus chromosome 17, clone RP23-228K17, complete sequence Length = 226769 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tatagttgcttttctttttcc 106 ||||||||||||||||||||| Sbjct: 105607 tatagttgcttttctttttcc 105627
>gb|AF026207.2| Caenorhabditis elegans fosmid H42K12, complete sequence Length = 16146 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 caaatgaaaataaaacagtac 48 ||||||||||||||||||||| Sbjct: 45 caaatgaaaataaaacagtac 25
>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26 Contains the 3' end of the SSLC22A3 gene for solute carrier family 22 (extraneuronal monoamine transporter), member 3 (extraneuronal monoamine transporter solute carrier family 22 (organic cation transporter), member 3(EMT, EMTh, OCT3)), the APOARGC gene for apolipoprotein (a) related gene C and a plasminogen (PLG) pseudogene, complete sequence Length = 162083 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 tatagttgcttttctttttcctttt 110 |||| |||||||||||||||||||| Sbjct: 73634 tataattgcttttctttttcctttt 73658
>gb|AC007916.10| Homo sapiens 12 BAC RP11-103D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121500 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 527 gcttctttcacaacaagcacc 547 ||||||||||||||||||||| Sbjct: 28669 gcttctttcacaacaagcacc 28649
>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence Length = 195439 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 gcttttctttttccttttggt 113 ||||||||||||||||||||| Sbjct: 93492 gcttttctttttccttttggt 93512
>gb|AC005188.1|AC005188 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence Length = 114918 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttccttttg 111 ||||||||||||||||||||| Sbjct: 36819 ttgcttttctttttccttttg 36799
>gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, complete sequence Length = 183837 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gatctcaaaagaccccatatt 361 ||||||||||||||||||||| Sbjct: 151059 gatctcaaaagaccccatatt 151039
>emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chromosome 2, complete sequence Length = 212364 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 ttttctttttccttttggtgc 115 ||||||||||||||||||||| Sbjct: 83926 ttttctttttccttttggtgc 83946
>gb|AC110553.10| Mus musculus chromosome 3, clone RP23-248D8, complete sequence Length = 206620 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaatgaaaataaaacagtac 48 |||||||||||||||||||| Sbjct: 53694 aaatgaaaataaaacagtac 53675
>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence Length = 193376 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 gcacctgtacaattggctgcaaaa 317 |||||||||| ||||||||||||| Sbjct: 55705 gcacctgtacgattggctgcaaaa 55682
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aacatcaaatgaaaataaaa 42 |||||||||||||||||||| Sbjct: 639682 aacatcaaatgaaaataaaa 639663
>ref|XM_476448.1| Oryza sativa (japonica cultivar-group), mRNA Length = 987 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 atcctgagcagctgttgcaa 219 |||||||||||||||||||| Sbjct: 884 atcctgagcagctgttgcaa 865
>gb|AC161434.2| Mus musculus chromosome 3, clone RP23-7K18, complete sequence Length = 195815 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaatgaaaataaaacagtac 48 |||||||||||||||||||| Sbjct: 116229 aaatgaaaataaaacagtac 116210
>gb|AC007864.5| Trypanosoma brucei chromosome 2 clone RPCI93-28H13, complete sequence Length = 160498 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 885 ttgcttttctttttcctttt 904
>gb|AC007862.7| Trypanosoma brucei chromosome 2 clone RPCI93-10C8, complete sequence Length = 150671 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 138810 ttgcttttctttttcctttt 138829
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 617214 ttgcttttctttttcctttt 617233
>gb|AC099705.7| Mus musculus chromosome 1, clone RP23-256I3, complete sequence Length = 166683 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 cgaattatagttgcttttcttttt 104 |||||||||||| ||||||||||| Sbjct: 101031 cgaattatagtttcttttcttttt 101054
>gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, complete sequence Length = 152510 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 66436 cttttctttttccttttggt 66455
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 29308136 ttgcttttctttttcctttt 29308117
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 47864 ttgcttttctttttcctttt 47883
>gb|AC003074.3| Homo sapiens PAC clone RP4-596O9 from 7, complete sequence Length = 143878 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 56659 cttttctttttccttttggt 56678
>emb|AL021479.1|CEY22F5A Caenorhabditis elegans YAC Y22F5A, complete sequence Length = 32588 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ttttctttttccttttggtg 114 |||||||||||||||||||| Sbjct: 13706 ttttctttttccttttggtg 13725
>gb|AC122842.3| Mus musculus BAC clone RP23-148K14 from 1, complete sequence Length = 209506 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 131256 ttgcttttctttttcctttt 131237
>gb|AC122317.4| Mus musculus BAC clone RP23-304C21 from 12, complete sequence Length = 173567 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caggaacaggtgcaggtggg 199 |||||||||||||||||||| Sbjct: 100887 caggaacaggtgcaggtggg 100868
>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence Length = 158340 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 153112 cttttctttttccttttggt 153131
>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 153084 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 taagaagatccaggaacagg 189 |||||||||||||||||||| Sbjct: 113835 taagaagatccaggaacagg 113816
>gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, complete sequence Length = 220713 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 159535 ttgcttttctttttcctttt 159554
>gb|AC148406.12| Medicago truncatula clone mth2-46e9, complete sequence Length = 110272 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gacatactaatgtgttgcatctaa 24 |||||||||||||||| ||||||| Sbjct: 23422 gacatactaatgtgttacatctaa 23445
>emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chromosome 10 Contains a novel gene, complete sequence Length = 113271 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 atttacatggtttagtgtga 151 |||||||||||||||||||| Sbjct: 21207 atttacatggtttagtgtga 21226
>emb|AL390838.26| Human DNA sequence from clone RP11-158D2 on chromosome 9 Contains a novel pseudogene and a novel gene, complete sequence Length = 193709 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ttaatggcttcaaaaattct 466 |||||||||||||||||||| Sbjct: 118899 ttaatggcttcaaaaattct 118918
>emb|AL357312.8| Human DNA sequence from clone RP11-390F10 on chromosome Xq21.2-22.1 Contains a eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene and a high-mobility group box 1 (HMGB1) pseudogene, complete sequence Length = 187469 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcttttctttttccttttgg 112 |||||||||||||||||||| Sbjct: 92721 gcttttctttttccttttgg 92702
>emb|AL160273.9| Human DNA sequence from clone RP11-366I5 on chromosome 9, complete sequence Length = 159934 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 98028 ttgcttttctttttcctttt 98009
>emb|AL133331.27| Human DNA sequence from clone RP11-157E14 on chromosome 20 Contains the 3' end of a novel gene, the 5' end of a novel gene, a novel gene and the 5' end of the SPTLC2L gene for serine palmitoyltransferase long chain base subunit 2-like (aminotransferase 2), complete sequence Length = 85110 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 acatcaaatgaaaataaaac 43 |||||||||||||||||||| Sbjct: 25757 acatcaaatgaaaataaaac 25776
>gb|AC158903.4| Mus musculus chromosome 18, clone RP23-318E22, complete sequence Length = 201073 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aacatcaaatgaaaataaaa 42 |||||||||||||||||||| Sbjct: 116619 aacatcaaatgaaaataaaa 116638
>emb|AL021307.1|HS106B9 Human DNA sequence from clone RP1-106B9 on chromosome Xq21, complete sequence Length = 109155 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 108626 cttttctttttccttttggt 108607
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 agttgcttttctttttcctt 108 |||||||||||||||||||| Sbjct: 669805 agttgcttttctttttcctt 669824
>gb|AC139238.5| Mus musculus BAC clone RP24-403G3 from chromosome 12, complete sequence Length = 170371 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 32253 cttttctttttccttttggt 32272
>emb|BX005003.10| Zebrafish DNA sequence from clone DKEY-241F8 in linkage group 13, complete sequence Length = 172889 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 taatggcttcaaaaattctg 467 |||||||||||||||||||| Sbjct: 165852 taatggcttcaaaaattctg 165833
>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence Length = 224673 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 cgaattatagttgcttttcttttt 104 |||||||||||| ||||||||||| Sbjct: 80284 cgaattatagtttcttttcttttt 80307
>emb|BX005068.13| Zebrafish DNA sequence from clone DKEY-40H17 in linkage group 1, complete sequence Length = 215007 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 cttcaaaaattctggagctg 473 |||||||||||||||||||| Sbjct: 11459 cttcaaaaattctggagctg 11440
>emb|BX537304.14| Zebrafish DNA sequence from clone CH211-283H6 in linkage group 5, complete sequence Length = 157564 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ttgcatctaacatcaaatgaaaat 38 ||||||| |||||||||||||||| Sbjct: 81483 ttgcatcaaacatcaaatgaaaat 81506
>gb|AC099783.2| Homo sapiens chromosome 3 clone RP11-115I24, complete sequence Length = 159870 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 tctaagaagatccaggaaca 187 |||||||||||||||||||| Sbjct: 101021 tctaagaagatccaggaaca 101002
>gb|AC099058.2| Homo sapiens chromosome 3 clone RP11-714G12, complete sequence Length = 196623 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aatttacatggtttagtgtg 150 |||||||||||||||||||| Sbjct: 42827 aatttacatggtttagtgtg 42808
>gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, complete sequence Length = 182165 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 120312 ttgcttttctttttcctttt 120331
>gb|AC025155.20| Homo sapiens 3 BAC RP11-487M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 40307 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 458 aaaaattctggagctgcattgtat 481 |||||||||| ||||||||||||| Sbjct: 377 aaaaattctgcagctgcattgtat 354
>emb|CR390516.1| Gallus gallus finished cDNA, clone ChEST135m12 Length = 705 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 557 cttttctttttccttttggt 576
>dbj|AK042799.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730025J21 product:unclassifiable, full insert sequence Length = 1567 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 151 ttgcttttctttttcctttt 170
>gb|AC023906.7|AC023906 Homo sapiens chromosome 15 clone CTD-2184D3 map 15q21.2, complete sequence Length = 93287 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ggaacaggtgcaggtgggat 201 |||||||||||||||||||| Sbjct: 65115 ggaacaggtgcaggtgggat 65096
>dbj|AK035049.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430079B08 product:unclassifiable, full insert sequence Length = 2902 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 83 ttgcttttctttttcctttt 102
>gb|AY370523.1| Petunia x hybrida MADS-box protein 17 (PMADS17) gene, partial cds Length = 1218 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ttctttttccttttggtgca 116 |||||||||||||||||||| Sbjct: 513 ttctttttccttttggtgca 494
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gatacgagaaccaaacacac 275 |||||||||||||||||||| Sbjct: 18397082 gatacgagaaccaaacacac 18397101
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 25283011 cttttctttttccttttggt 25283030
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 29399558 ttgcttttctttttcctttt 29399539
>gb|AC159114.7| Mus musculus BAC RP23-370L19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 169393 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 taagaagatccaggaacagg 189 |||||||||||||||||||| Sbjct: 101227 taagaagatccaggaacagg 101246
>gb|AC017033.5| Homo sapiens BAC clone RP11-297J22 from 2, complete sequence Length = 183887 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 162066 ttgcttttctttttcctttt 162047
>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202478 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 92750 ttgcttttctttttcctttt 92769
>gb|AC069410.10| Homo sapiens 3 BAC RP11-32M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176924 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 458 aaaaattctggagctgcattgtat 481 |||||||||| ||||||||||||| Sbjct: 148675 aaaaattctgcagctgcattgtat 148652
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 ttatagttgcttttctttttcctt 108 |||||||||||||| ||||||||| Sbjct: 655420 ttatagttgcttttgtttttcctt 655397
>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0505A04 Length = 159241 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 101619 cttttctttttccttttggt 101638
>emb|BX284612.22| Mouse DNA sequence from clone RP23-332H17 on chromosome 2, complete sequence Length = 132718 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 aatggcttcaaaaattctgg 468 |||||||||||||||||||| Sbjct: 83243 aatggcttcaaaaattctgg 83262
>emb|BX005473.5| Zebrafish DNA sequence from clone DKEY-148P7 in linkage group 1, complete sequence Length = 94966 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 cttcaaaaattctggagctg 473 |||||||||||||||||||| Sbjct: 57883 cttcaaaaattctggagctg 57902
>gb|AC136371.4| Mus musculus chromosome 1, clone RP23-405G16, complete sequence Length = 225976 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 206281 ttgcttttctttttcctttt 206262
>gb|AC151973.4| Mus musculus BAC clone RP24-317P2 from 14, complete sequence Length = 176759 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ttttctttttccttttggtg 114 |||||||||||||||||||| Sbjct: 31143 ttttctttttccttttggtg 31124
>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173275 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 117218 ttgcttttctttttcctttt 117199
>dbj|AP001980.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-264L21, complete sequence Length = 151939 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 130238 cttttctttttccttttggt 130257
>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete sequence Length = 171738 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 52912 cttttctttttccttttggt 52931
>dbj|AP004106.1| Nansenia ardesiaca mitochondrial DNA, complete genome Length = 16620 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ctcaacatcacttatcttaa 419 |||||||||||||||||||| Sbjct: 11958 ctcaacatcacttatcttaa 11977
>gb|AC102393.8| Mus musculus chromosome 18, clone RP24-125H9, complete sequence Length = 152240 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aacatcaaatgaaaataaaa 42 |||||||||||||||||||| Sbjct: 95186 aacatcaaatgaaaataaaa 95167
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gatacgagaaccaaacacac 275 |||||||||||||||||||| Sbjct: 18323308 gatacgagaaccaaacacac 18323327
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gatacgagaaccaaacacac 275 |||||||||||||||||||| Sbjct: 48981 gatacgagaaccaaacacac 49000
>gb|AC121960.3| Mus musculus BAC clone RP24-248C17 from 14, complete sequence Length = 160030 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ttttctttttccttttggtg 114 |||||||||||||||||||| Sbjct: 155125 ttttctttttccttttggtg 155106
>gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, complete sequence Length = 212242 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ttgcttttctttttcctttt 110 |||||||||||||||||||| Sbjct: 64008 ttgcttttctttttcctttt 63989
>emb|CR385061.15| Zebrafish DNA sequence from clone BUSM1-20K6, complete sequence Length = 79139 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ttgcatctaacatcaaatgaaaat 38 ||||||| |||||||||||||||| Sbjct: 62625 ttgcatcaaacatcaaatgaaaat 62648
>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence Length = 217373 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ttttctttttccttttggtg 114 |||||||||||||||||||| Sbjct: 174821 ttttctttttccttttggtg 174802
>emb|AL807803.6| Mouse DNA sequence from clone RP23-96B14 on chromosome X, complete sequence Length = 177011 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tgcttttctttttccttttg 111 |||||||||||||||||||| Sbjct: 142564 tgcttttctttttccttttg 142583
>emb|AL844526.5| Mouse DNA sequence from clone RP23-201O18 on chromosome 2, complete sequence Length = 204398 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cttttctttttccttttggt 113 |||||||||||||||||||| Sbjct: 154746 cttttctttttccttttggt 154727
>gb|AY066707.1| Schmidtea mediterranea clone HB.21.1a unknown mRNA sequence Length = 683 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 agaagatccaggaacaggtg 191 |||||||||||||||||||| Sbjct: 128 agaagatccaggaacaggtg 147
>gb|AC107050.3| Homo sapiens BAC clone RP11-182A9 from 4, complete sequence Length = 167699 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 acaagcacccttaaattctc 558 |||||||||||||||||||| Sbjct: 122382 acaagcacccttaaattctc 122401
>gb|AC135321.2| Homo sapiens chromosome 3 clone RP11-733F11, complete sequence Length = 177164 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tctaagaagatccaggaaca 187 |||||||||||||||||||| Sbjct: 7493 tctaagaagatccaggaaca 7512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,623,339 Number of Sequences: 3902068 Number of extensions: 6623339 Number of successful extensions: 163925 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 163242 Number of HSP's gapped (non-prelim): 671 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
