>DMP1_RAT (P98193) Dentin matrix acidic phosphoprotein 1 precursor (Dentin|
           matrix protein 1) (DMP-1) (AG1)
          Length = 489

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 4/164 (2%)
 Frame = -1

Query: 643 QTSQVNAPDLGSTPEQTHFVEQDAYTSYGAHT--QGSQPYLPT-RGIRMPEENRWTETSE 473
           +T  V+  D  S  E     ++D   +       +G  P   +      P +   +E+ E
Sbjct: 268 ETQSVSTEDFRSKEESRSETQEDTAETQSQEDSPEGQDPSSESSEEAGEPSQESSSESQE 327

Query: 472 GAQSYNSGQEINDPSW-GDEHTQRGAQKKILTETHDTQCTLPVMLNDFFGEDVIGPSYIN 296
           G  S + G   ++ S  GD+     +++  L     ++        D    + +    ++
Sbjct: 328 GVASESRGDNPDNTSQTGDQRDSESSEEDRLNTFSSSESQSTEEQGDSESNESLS---LS 384

Query: 295 SESQPFTYNLESSSQYGFQTPPHMHESQTQEHEGQYGRGLREHR 164
            ESQ    + +SSSQ G Q+     ES++QE + +      E+R
Sbjct: 385 EESQESAQDEDSSSQEGLQSQSASRESRSQESQSEQDSRSEENR 428

>NEDD4_RAT (Q62940) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 887

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
 Frame = -1

Query: 673 DNDSSLPIHGQ-------TSQVNAPDLGSTPEQTHFVEQDAYTSYGAHTQGSQPY-LPTR 518
           + D  L  HG        +  V+ PD   +PE    V +D  T Y      S P   P  
Sbjct: 288 NGDIQLQAHGAFTTRRQISEDVDGPDNHESPENWEIVREDENTIYSGQAVQSPPSGHPDV 347

Query: 517 GIRMPEENRWTETSEGAQSYNSGQEINDPSWGDEHTQRGAQKKILTETHDTQCTLPVML 341
            +R+ EE     T  G          + P     H+ RG   +  T   + Q TLPV+L
Sbjct: 348 QVRLAEELDTRLTMYG------NPATSQPVTSSNHSSRGGSSQ--TCIFEEQPTLPVLL 398

>PTP1_CAEEL (P28191) Tyrosine-protein phosphatase 1 (EC 3.1.3.48)|
           (Protein-tyrosine phosphatase 1)
          Length = 1026

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = -1

Query: 652 IHGQTSQVNAPDLGSTPE-QTHFVEQDAYTSYGAHTQGSQPYLPTRGIRMPEENRWTETS 476
           IH  T+ V     GSTP   +       Y+ YG  TQ  QP   T     P  N     S
Sbjct: 490 IHASTASVRPVSSGSTPNGASRKSANSGYSGYGYATQTQQPTSTTNASYSPYLNGTISRS 549

Query: 475 EGA 467
            GA
Sbjct: 550 SGA 552

>EXPA_DROME (Q07436) Protein expanded|
          Length = 1427

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 1/172 (0%)
 Frame = -1

Query: 670  NDSSLPIHGQTSQVNAPDLGSTPEQTHFVEQDAYTSYGAHTQGSQPYLPTRGIRMPEENR 491
            NDSS      +SQ N   +GS    T           GA    S   +P        E  
Sbjct: 548  NDSSTATDSPSSQHN---IGSQCSSTCSTVVVTSPVNGAGASSSGAPIPVHSTSSSLELG 604

Query: 490  WTETSEG-AQSYNSGQEINDPSWGDEHTQRGAQKKILTETHDTQCTLPVMLNDFFGEDVI 314
            ++ T++  A S  S  +    S  +E         + T  H    T    +      ++ 
Sbjct: 605  FSHTAQNSALSETSPDDFLSTSAREETESVSGASGVYTLAHGAPPTETSGVYTMHSSELT 664

Query: 313  GPSYINSESQPFTYNLESSSQYGFQTPPHMHESQTQEHEGQYGRGLREHRPR 158
            G S   +ES       E SS YG   P  + E+  Q  +   G+   + RPR
Sbjct: 665  GQSSEIAES-------EKSSHYGMFQPQKLEETHVQHSDSVDGKKKEDFRPR 709

>CD008_MOUSE (Q8CGI1) Protein C4orf008 homolog (Fragment)|
          Length = 944

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
 Frame = +3

Query: 147 DNRSRGLCSRRPRPYCPSCS----CVCDSC------ICGGV*NPY*DD 260
           D R   L SR   P CP+C+    C CD C       CG +  P  DD
Sbjct: 187 DTRRHMLSSRLSMPDCPNCNYRRRCACDDCSLSHILTCGIMDTPVTDD 234

>VP7_WTV (P13092) Nonstructural protein PNS7|
          Length = 520

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 523 WADMAEILECVRHMMYMHPAPRNESVRASNLNLEHLPVMSGHVLVETSHCR 675
           W D AEIL  +  + ++  +P +   R SNL    LPV S ++ VE S  R
Sbjct: 272 WLDKAEILSKLNAIDFI-VSPEDNEDRISNLLKLMLPVQSNNITVEKSDTR 321

>BGAL_ACTPL (P70753) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 1005

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
 Frame = -1

Query: 535  PYLPTRGIRMPEENRWTETSEGAQSYNSGQEINDPSWGDEH--TQRGAQKKILTETHDTQ 362
            PYLP  G+R      W   +E    Y    E    S+ D+H     G       + H T 
Sbjct: 853  PYLPRFGLRF-----WLAKAENTVEYFGYGE--QESYVDKHHLANLGIYHTTAKQNH-TD 904

Query: 361  CTLPVMLNDFFG-EDVIGPSYINSESQPFTYNLESSSQYGFQTPPHMHESQTQEH 200
               P      +G E +   +   S SQPF++NL   +Q       H +E Q  ++
Sbjct: 905  YVKPQENGSHYGCEYLKSENLFVSASQPFSFNLSPYTQEELTEKKHYYELQESDY 959

>LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein domain family|
           member 1)
          Length = 1096

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 526 PTRGIRMPEENRWTETSEGAQSYNSGQEINDPSW----GDEHTQRGAQKK 389
           PTR +   ++ +  E  EG+ S  S +  +D S     GDE  QRG QKK
Sbjct: 196 PTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKK 245

>DMP1_MOUSE (O55188) Dentin matrix acidic phosphoprotein 1 precursor (Dentin|
           matrix protein 1) (DMP-1) (AG1)
          Length = 503

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = -1

Query: 505 PEENRWTETSEGAQSYNSGQEINDPSW-GDEHTQRGAQKKILTETHDTQCTLPVMLNDFF 329
           P +   +E+ EG  S + G   ++ S  GD+     +++  L     ++        D  
Sbjct: 333 PSQESSSESQEGVTSESRGDNPDNTSQTGDQEDSESSEEDSLNTFSSSESQSTEEQADSE 392

Query: 328 GEDVIGPSYINSESQPFTYNLESSSQYGFQTPPHMHESQTQEHEGQ 191
             + +    ++ ESQ    + +SSSQ G Q+     ES++QE + +
Sbjct: 393 SNESLS---LSEESQESAQDGDSSSQEGLQSQSASTESRSQESQSE 435

>YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 intergenic|
           region
          Length = 758

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
 Frame = -1

Query: 505 PEENRWTETSEGAQSYNSGQE--INDPSWGDEHTQRGAQKKILTET---HDTQCTLPVML 341
           P +N +  + E  +    G    +NDP      T R   ++ L+ T   +D Q +     
Sbjct: 190 PTQNSFPVSEESFRPNGDGSNFNLNDP------TNRNVSERFLSRTSGVYDKQNSANFAP 243

Query: 340 NDFFGEDVIGPSYINSESQPFTYNLES------SSQYGFQTPPHMHESQTQEHEGQYGRG 179
           +     D+ G  Y          +L+S      SSQ   Q P H  + Q Q+ + Q  + 
Sbjct: 244 DTAINSDIAGQQYATINLHKHFNDLQSPAQPQQSSQQQIQQPQHQPQHQPQQQQQQQQQQ 303

Query: 178 LREHRPRER 152
            ++ + +++
Sbjct: 304 QQQQQQQQQ 312

>KI21B_HUMAN (O75037) Kinesin family member 21B|
          Length = 1637

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 529  LPTRGIRMPEENRWTETS--EGAQSYNSGQEINDPSWG 422
            LPTRG   P ++R TETS     +SY+ GQ I     G
Sbjct: 1198 LPTRGSTFPRQSRATETSPLTRRKSYDRGQPIRSTDVG 1235

>FEMX_STAES (Q8CNE9) Aminoacyltransferase femX (EC 2.3.2.-) (Factor essential|
           for expression of methicillin resistance X)
          Length = 416

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = -1

Query: 589 FVEQDAYTSYGAHTQGSQPYLPTRGIRMPEENRWTETSEGAQSYNSGQEINDPSWGDEHT 410
           F    +Y  YGA +   + +LP     M  E        GA +Y+ G   NDP    EH 
Sbjct: 306 FAGNKSYYLYGASSNDYRDFLPNH--HMQFEMMKYAREHGATTYDFGGTDNDPDKDSEHY 363

Query: 409 QRGAQKKI 386
              A K++
Sbjct: 364 GLWAFKRV 371

>FEMX_STAEQ (Q5HLY6) Aminoacyltransferase femX (EC 2.3.2.-) (Factor essential|
           for expression of methicillin resistance X)
          Length = 416

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = -1

Query: 589 FVEQDAYTSYGAHTQGSQPYLPTRGIRMPEENRWTETSEGAQSYNSGQEINDPSWGDEHT 410
           F    +Y  YGA +   + +LP     M  E        GA +Y+ G   NDP    EH 
Sbjct: 306 FAGNKSYYLYGASSNDYRDFLPNH--HMQFEMMKYAREHGATTYDFGGTDNDPDKDSEHY 363

Query: 409 QRGAQKKI 386
              A K++
Sbjct: 364 GLWAFKRV 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,049,231
Number of Sequences: 219361
Number of extensions: 2122594
Number of successful extensions: 5877
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5872
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)