| Clone Name | rbags11e24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009543.1| Triticum aestivum clone wr1.pk0153.d9:fis, full insert mRNA sequence Length = 1074 Score = 775 bits (391), Expect = 0.0 Identities = 509/550 (92%), Gaps = 9/550 (1%) Strand = Plus / Minus Query: 36 acatgtgtgtatttccgcactccctccgttaaatgcacaagnnctggttttcaaaggttg 95 ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| Sbjct: 978 acatgtgtgtatttctgcactccctctgttaaatgcacaagtactggttttcaaaggt-- 921 Query: 96 tagaaccacaaagaaacatcattcgcatccaggcatccagatgaagttgtatcaagctcg 155 | ||||||||| ||||||| ||||||||||| ||||||||| ||||| |||||||||| Sbjct: 920 -ataaccacaaataaacatccttcgcatccagacatccagataaagttctatcaagctca 862 Query: 156 c-----ttcagccccaagcggcngatcggactgttcttgatcacattgaagtcgaccttt 210 | | |||||||||||||| ||||| ||| ||||||||| |||||||||||||||| Sbjct: 861 ccacactacagccccaagcggcaaatcgggctgctcttgatcagattgaagtcgaccttt 802 Query: 211 ggcccaaagagatcccgtatgttgncaatctcatacataatcattgntggcctttcaagt 270 |||||||||||||| ||||||||| ||||| |||||| |||||||| |||||||||||| Sbjct: 801 ggcccaaagagatcacgtatgttgtcaatcccatacagaatcattgttggcctttcaagc 742 Query: 271 gaaagaccccatgcgataacattaacaccctctggcagtcccatgggaagtaacatttca 330 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 gaaagaccccatgcgataacattaacaccctctggcagtcccatgggaagtaacatttcc 682 Query: 331 ggcctgaacatgcctgagttgnctatttccacccatctcttcanaccatcgtgntagctg 390 ||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |||||| Sbjct: 681 ggcctgaacatgcctgagttgcctatttccacccatttcttcagaccatcgtggtagctg 622 Query: 391 aaaatttccatgcttgnttcanctgtacgggttgtaggcaggtttgaaacgcagctttga 450 |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 621 aaaatttccatgcttggttcag-tgtacgggttgtaggcaggtttgaaacgcagctttga 563 Query: 451 catgcctagtctggagaagaaatcctccaatacacctatcagatcaccaagcgtcaaacc 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 catgcctagtctggagaagaaatcctccaatacacctatcagatcaccaagcgtcaaacc 503 Query: 511 ataatcacaaataagaccttctatctggtggaattctgcaagatgagttcgatncacagc 570 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 502 ataatcacaaataagaccttctatctggtggaattctgcaagatgagttcggtccacagc 443 Query: 571 ttcattccgg 580 |||||||||| Sbjct: 442 ttcattccgg 433
>dbj|AK068126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129C16, full insert sequence Length = 2056 Score = 391 bits (197), Expect = e-105 Identities = 334/381 (87%), Gaps = 1/381 (0%) Strand = Plus / Minus Query: 196 ttgaagtcgacctttggcccaaagagatcccgtatgttgncaatctcatacataatcatt 255 ||||| || |||||||| |||||||| || || |||||| | || | || | ||||||| Sbjct: 1607 ttgaaatcaacctttggtccaaagaggtctcgaatgttgtcgatgccgtaaagaatcatt 1548 Query: 256 gntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatg 315 | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1547 gttggcctttctagtgaaagaccccatgcaataacattaacaccctctggcagtcccatg 1488 Query: 316 ggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctcttcana 375 ||||||||||||||||| ||||||||||| ||||| | | |||||||||| |||||| | Sbjct: 1487 ggaagtaacatttcaggtctgaacatgccagagttaccaacttccacccatttcttcaaa 1428 Query: 376 ccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggcaggttt 435 || || || || ||||||||||||||||| | || |||| || ||||||||||| || Sbjct: 1427 ccttcatggtaactgaaaatttccatgctcggctcgg-tgtatggattgtaggcaggctt 1369 Query: 436 gaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctatcagatc 495 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 1368 gaaacgcagctttgacatgcctagactcgagaagaaatcctccaatacaccaatcagatc 1309 Query: 496 accaagcgtcaaaccataatcacaaataagaccttctatctggtggaattctgcaagatg 555 ||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 1308 acccagcgtcaaaccataatcacaaatgagaccttcaatctggtggaattccgcaagatg 1249 Query: 556 agttcgatncacagcttcatt 576 ||| || | |||||||||||| Sbjct: 1248 agtccggtccacagcttcatt 1228
>dbj|AK058484.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D07, full insert sequence Length = 1222 Score = 391 bits (197), Expect = e-105 Identities = 334/381 (87%), Gaps = 1/381 (0%) Strand = Plus / Minus Query: 196 ttgaagtcgacctttggcccaaagagatcccgtatgttgncaatctcatacataatcatt 255 ||||| || |||||||| |||||||| || || |||||| | || | || | ||||||| Sbjct: 890 ttgaaatcaacctttggtccaaagaggtctcgaatgttgtcgatgccgtaaagaatcatt 831 Query: 256 gntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatg 315 | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 830 gttggcctttctagtgaaagaccccatgcaataacattaacaccctctggcagtcccatg 771 Query: 316 ggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctcttcana 375 ||||||||||||||||| ||||||||||| ||||| | | |||||||||| |||||| | Sbjct: 770 ggaagtaacatttcaggtctgaacatgccagagttaccaacttccacccatttcttcaaa 711 Query: 376 ccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggcaggttt 435 || || || || ||||||||||||||||| | || |||| || ||||||||||| || Sbjct: 710 ccttcatggtaactgaaaatttccatgctcggctcgg-tgtatggattgtaggcaggctt 652 Query: 436 gaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctatcagatc 495 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 651 gaaacgcagctttgacatgcctagactcgagaagaaatcctccaatacaccaatcagatc 592 Query: 496 accaagcgtcaaaccataatcacaaataagaccttctatctggtggaattctgcaagatg 555 ||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 591 acccagcgtcaaaccataatcacaaatgagaccttcaatctggtggaattccgcaagatg 532 Query: 556 agttcgatncacagcttcatt 576 ||| || | |||||||||||| Sbjct: 531 agtccggtccacagcttcatt 511
>gb|AY104305.1| Zea mays PCO070985 mRNA sequence Length = 1329 Score = 359 bits (181), Expect = 7e-96 Identities = 330/381 (86%), Gaps = 1/381 (0%) Strand = Plus / Minus Query: 196 ttgaagtcgacctttggcccaaagagatcccgtatgttgncaatctcatacataatcatt 255 ||||| || |||||||| ||||| || |||| ||||||| | || |||| | ||||| Sbjct: 922 ttgaaatcaacctttggtccaaacaggtcccttatgttgtcgataccataaaggatcatc 863 Query: 256 gntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatg 315 | ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 862 gttggcctttcaagtgaaagaccccatgcaataacattaacaccttctggcagtcccatg 803 Query: 316 ggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctcttcana 375 ||||| ||||| || ||||||||||||||||| || | | |||||||||| |||||| | Sbjct: 802 ggaagcaacatctctggcctgaacatgcctgaattaccaacttccacccatttcttcaaa 743 Query: 376 ccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggcaggttt 435 ||||| || || ||||||||||||||||| | |||| | || || ||||||||||| || Sbjct: 742 ccatcatggtaactgaaaatttccatgctgggttcag-tatatggattgtaggcaggctt 684 Query: 436 gaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctatcagatc 495 |||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 683 gaaacgcagcttggacatgcctagacttgagaagaaatcctccaatacaccaatcagatc 624 Query: 496 accaagcgtcaaaccataatcacaaataagaccttctatctggtggaattctgcaagatg 555 |||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 623 accaagtgtcaaaccataatcacagataagtccctctatctggtggaattcagcaagatg 564 Query: 556 agttcgatncacagcttcatt 576 ||| || | ||||||||||| Sbjct: 563 agtccggtcaacagcttcatt 543
>ref|NM_196382.1| Oryza sativa (japonica cultivar-group) putative phenylalanyl-tRNA synthetase alpha chain (OSJNBa0050N08.23), mRNA Length = 1572 Score = 232 bits (117), Expect = 1e-57 Identities = 225/262 (85%), Gaps = 1/262 (0%) Strand = Plus / Minus Query: 196 ttgaagtcgacctttggcccaaagagatcccgtatgttgncaatctcatacataatcatt 255 ||||| || |||||||| |||||||| || || |||||| | || | || | ||||||| Sbjct: 1529 ttgaaatcaacctttggtccaaagaggtctcgaatgttgtcgatgccgtaaagaatcatt 1470 Query: 256 gntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatg 315 | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1469 gttggcctttctagtgaaagaccccatgcaataacattaacaccctctggcagtcccatg 1410 Query: 316 ggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctcttcana 375 ||||||||||||||||| ||||||||||| ||||| | | |||||||||| |||||| | Sbjct: 1409 ggaagtaacatttcaggtctgaacatgccagagttaccaacttccacccatttcttcaaa 1350 Query: 376 ccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggcaggttt 435 || || || || ||||||||||||||||| | || |||| || ||||||||||| || Sbjct: 1349 ccttcatggtaactgaaaatttccatgctcggctc-ggtgtatggattgtaggcaggctt 1291 Query: 436 gaaacgcagctttgacatgcct 457 |||||||||||||||||||||| Sbjct: 1290 gaaacgcagctttgacatgcct 1269 Score = 61.9 bits (31), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 527 ccttctatctggtggaattctgcaagatgagttcgatncacagcttcatt 576 ||||| |||||||||||||| ||||||||||| || | |||||||||||| Sbjct: 1271 ccttcaatctggtggaattccgcaagatgagtccggtccacagcttcatt 1222
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08, complete sequence Length = 144593 Score = 161 bits (81), Expect = 3e-36 Identities = 120/134 (89%) Strand = Plus / Plus Query: 261 cctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatgggaag 320 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 121965 cctttctagtgaaagaccccatgcaataacattaacaccctctggcagtcccatgggaag 122024 Query: 321 taacatttcaggcctgaacatgcctgagttgnctatttccacccatctcttcanaccatc 380 |||||||||||| ||||||||||| ||||| | | |||||||||| |||||| ||| || Sbjct: 122025 taacatttcaggtctgaacatgccagagttaccaacttccacccatttcttcaaaccttc 122084 Query: 381 gtgntagctgaaaa 394 || || ||||||| Sbjct: 122085 atggtaactgaaaa 122098 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 455 cctagtctggagaagaaatcctccaatacacctatcagatcaccaagcgtcaaaccataa 514 ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 122838 cctagactcgagaagaaatcctccaatacaccaatcagatcacccagcgtcaaaccataa 122897 Query: 515 tcacaaataagacct 529 |||||||| |||||| Sbjct: 122898 tcacaaatgagacct 122912 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 422 ttgtaggcaggtttgaaacgcagctttgacatgccta 458 ||||||||||| ||||||||||||||||||||||||| Sbjct: 122223 ttgtaggcaggcttgaaacgcagctttgacatgccta 122259 Score = 63.9 bits (32), Expect = 5e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 526 accttctatctggtggaattctgcaagatgagttcgatncacagcttcatt 576 |||||| |||||||||||||| ||||||||||| || | |||||||||||| Sbjct: 123018 accttcaatctggtggaattccgcaagatgagtccggtccacagcttcatt 123068
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 161 bits (81), Expect = 3e-36 Identities = 120/134 (89%) Strand = Plus / Plus Query: 261 cctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatgggaag 320 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 13023049 cctttctagtgaaagaccccatgcaataacattaacaccctctggcagtcccatgggaag 13023108 Query: 321 taacatttcaggcctgaacatgcctgagttgnctatttccacccatctcttcanaccatc 380 |||||||||||| ||||||||||| ||||| | | |||||||||| |||||| ||| || Sbjct: 13023109 taacatttcaggtctgaacatgccagagttaccaacttccacccatttcttcaaaccttc 13023168 Query: 381 gtgntagctgaaaa 394 || || ||||||| Sbjct: 13023169 atggtaactgaaaa 13023182 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 455 cctagtctggagaagaaatcctccaatacacctatcagatcaccaagcgtcaaaccataa 514 ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 13023922 cctagactcgagaagaaatcctccaatacaccaatcagatcacccagcgtcaaaccataa 13023981 Query: 515 tcacaaataagacct 529 |||||||| |||||| Sbjct: 13023982 tcacaaatgagacct 13023996 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 422 ttgtaggcaggtttgaaacgcagctttgacatgccta 458 ||||||||||| ||||||||||||||||||||||||| Sbjct: 13023307 ttgtaggcaggcttgaaacgcagctttgacatgccta 13023343 Score = 63.9 bits (32), Expect = 5e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 526 accttctatctggtggaattctgcaagatgagttcgatncacagcttcatt 576 |||||| |||||||||||||| ||||||||||| || | |||||||||||| Sbjct: 13024102 accttcaatctggtggaattccgcaagatgagtccggtccacagcttcatt 13024152
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 161 bits (81), Expect = 3e-36 Identities = 120/134 (89%) Strand = Plus / Plus Query: 261 cctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatgggaag 320 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 13030389 cctttctagtgaaagaccccatgcaataacattaacaccctctggcagtcccatgggaag 13030448 Query: 321 taacatttcaggcctgaacatgcctgagttgnctatttccacccatctcttcanaccatc 380 |||||||||||| ||||||||||| ||||| | | |||||||||| |||||| ||| || Sbjct: 13030449 taacatttcaggtctgaacatgccagagttaccaacttccacccatttcttcaaaccttc 13030508 Query: 381 gtgntagctgaaaa 394 || || ||||||| Sbjct: 13030509 atggtaactgaaaa 13030522 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 455 cctagtctggagaagaaatcctccaatacacctatcagatcaccaagcgtcaaaccataa 514 ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 13031262 cctagactcgagaagaaatcctccaatacaccaatcagatcacccagcgtcaaaccataa 13031321 Query: 515 tcacaaataagacct 529 |||||||| |||||| Sbjct: 13031322 tcacaaatgagacct 13031336 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 422 ttgtaggcaggtttgaaacgcagctttgacatgccta 458 ||||||||||| ||||||||||||||||||||||||| Sbjct: 13030647 ttgtaggcaggcttgaaacgcagctttgacatgccta 13030683 Score = 63.9 bits (32), Expect = 5e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 526 accttctatctggtggaattctgcaagatgagttcgatncacagcttcatt 576 |||||| |||||||||||||| ||||||||||| || | |||||||||||| Sbjct: 13031442 accttcaatctggtggaattccgcaagatgagtccggtccacagcttcatt 13031492
>gb|BT012684.1| Lycopersicon esculentum clone 113532R, mRNA sequence Length = 1732 Score = 79.8 bits (40), Expect = 9e-12 Identities = 126/156 (80%) Strand = Plus / Minus Query: 249 aatcattgntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcag 308 |||||| | |||||| ||||| ||||| ||||| || |||||| |||| | |||||||| Sbjct: 1452 aatcatcgttggcctctcaagggaaaggccccaggcaataacacgaacatcttctggcag 1393 Query: 309 tcccatgggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatct 368 ||||| ||||| | |||||||||||| ||||| || || || | | |||||||||| | Sbjct: 1392 acccataggaagaagcatttcaggcctaaacataccagaatttccaacttccacccattt 1333 Query: 369 cttcanaccatcgtgntagctgaaaatttccatgct 404 ||| | || || || |||||||||||||||||||| Sbjct: 1332 cttaaagccttcatggtagctgaaaatttccatgct 1297
>gb|AC146746.15| Medicago truncatula clone mth2-108p9, complete sequence Length = 95118 Score = 54.0 bits (27), Expect = 5e-04 Identities = 86/106 (81%) Strand = Plus / Minus Query: 261 cctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatgggaag 320 ||||||||| ||||| |||||||| ||||| | ||| | || || |||||||| || | Sbjct: 88613 cctttcaagagaaagtccccatgcaataacttggacatcttcaggaagtcccatcggccg 88554 Query: 321 taacatttcaggcctgaacatgcctgagttgnctatttccacccat 366 ||||||||||| ||||||||||| ||||| ||| ||| |||||| Sbjct: 88553 caacatttcaggtctgaacatgccagagtttcctacttctacccat 88508 Score = 40.1 bits (20), Expect = 7.9 Identities = 43/51 (84%) Strand = Plus / Minus Query: 526 accttctatctggtggaattctgcaagatgagttcgatncacagcttcatt 576 |||||||||||| ||||| || |||||||| || || | ||| |||||||| Sbjct: 87875 accttctatctgatggaactcagcaagatgtgtacggtccactgcttcatt 87825
>gb|AC134242.17| Medicago truncatula clone mth2-10p20, complete sequence Length = 115005 Score = 54.0 bits (27), Expect = 5e-04 Identities = 86/106 (81%) Strand = Plus / Minus Query: 261 cctttcaagtgaaagaccccatgcgataacattaacaccctctggcagtcccatgggaag 320 ||||||||| ||||| |||||||| ||||| | ||| | || || |||||||| || | Sbjct: 18648 cctttcaagagaaagtccccatgcaataacttggacatcttcaggaagtcccatcggccg 18589 Query: 321 taacatttcaggcctgaacatgcctgagttgnctatttccacccat 366 ||||||||||| ||||||||||| ||||| ||| ||| |||||| Sbjct: 18588 caacatttcaggtctgaacatgccagagtttcctacttctacccat 18543 Score = 40.1 bits (20), Expect = 7.9 Identities = 43/51 (84%) Strand = Plus / Minus Query: 526 accttctatctggtggaattctgcaagatgagttcgatncacagcttcatt 576 |||||||||||| ||||| || |||||||| || || | ||| |||||||| Sbjct: 17910 accttctatctgatggaactcagcaagatgtgtacggtccactgcttcatt 17860
>ref|NM_120089.3| Arabidopsis thaliana ATP binding / phenylalanine-tRNA ligase AT4G39280 mRNA, complete cds Length = 1655 Score = 52.0 bits (26), Expect = 0.002 Identities = 195/252 (77%), Gaps = 1/252 (0%) Strand = Plus / Minus Query: 250 atcattgntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagt 309 ||||||| ||| |||||||| || |||||||| ||||| || ||||| |||| || || Sbjct: 1382 atcattgttggtctttcaagagagagaccccaagcgatgactctaacatcctcggggaga 1323 Query: 310 cccatgggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctc 369 ||||| || || | |||||| || |||||||| || ||||| | || |||||||| || Sbjct: 1322 cccatcggtagaagcatttcgggtctgaacatcccagagtttccaatctccacccacttc 1263 Query: 370 ttcanaccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggc 429 | ||| || || ||||||||||| |||||||||| || |||| |||||||| || Sbjct: 1262 cctaaaccttcatggtagctgaaaatctccatgcttggctc-tgtgtaagggttgtaagc 1204 Query: 430 aggtttgaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctat 489 || |||||||||| || ||||| |||| | |||||||| || || |||||||| || Sbjct: 1203 tggcttgaaacgcaatttcgacatccctaagcgtgagaagaagtcttctaatacaccaat 1144 Query: 490 cagatcaccaag 501 ||| || ||||| Sbjct: 1143 caggtctccaag 1132
>gb|BT015558.1| Arabidopsis thaliana At4g39280 mRNA sequence Length = 1455 Score = 52.0 bits (26), Expect = 0.002 Identities = 195/252 (77%), Gaps = 1/252 (0%) Strand = Plus / Minus Query: 250 atcattgntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagt 309 ||||||| ||| |||||||| || |||||||| ||||| || ||||| |||| || || Sbjct: 1361 atcattgttggtctttcaagagagagaccccaagcgatgactctaacatcctcggggaga 1302 Query: 310 cccatgggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctc 369 ||||| || || | |||||| || |||||||| || ||||| | || |||||||| || Sbjct: 1301 cccatcggtagaagcatttcgggtctgaacatcccagagtttccaatctccacccacttc 1242 Query: 370 ttcanaccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggc 429 | ||| || || ||||||||||| |||||||||| || |||| |||||||| || Sbjct: 1241 cctaaaccttcatggtagctgaaaatctccatgcttggctc-tgtgtaagggttgtaagc 1183 Query: 430 aggtttgaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctat 489 || |||||||||| || ||||| |||| | |||||||| || || |||||||| || Sbjct: 1182 tggcttgaaacgcaatttcgacatccctaagcgtgagaagaagtcttctaatacaccaat 1123 Query: 490 cagatcaccaag 501 ||| || ||||| Sbjct: 1122 caggtctccaag 1111
>gb|BT014739.1| Arabidopsis thaliana At4g39280.1 mRNA sequence Length = 1455 Score = 52.0 bits (26), Expect = 0.002 Identities = 195/252 (77%), Gaps = 1/252 (0%) Strand = Plus / Minus Query: 250 atcattgntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagt 309 ||||||| ||| |||||||| || |||||||| ||||| || ||||| |||| || || Sbjct: 1361 atcattgttggtctttcaagagagagaccccaagcgatgactctaacatcctcggggaga 1302 Query: 310 cccatgggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctc 369 ||||| || || | |||||| || |||||||| || ||||| | || |||||||| || Sbjct: 1301 cccatcggtagaagcatttcgggtctgaacatcccagagtttccaatctccacccacttc 1242 Query: 370 ttcanaccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggc 429 | ||| || || ||||||||||| |||||||||| || |||| |||||||| || Sbjct: 1241 cctaaaccttcatggtagctgaaaatctccatgcttggctc-tgtgtaagggttgtaagc 1183 Query: 430 aggtttgaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctat 489 || |||||||||| || ||||| |||| | |||||||| || || |||||||| || Sbjct: 1182 tggcttgaaacgcaatttcgacatccctaagcgtgagaagaagtcttctaatacaccaat 1123 Query: 490 cagatcaccaag 501 ||| || ||||| Sbjct: 1122 caggtctccaag 1111
>ref|XM_656336.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3824.2), mRNA Length = 1551 Score = 52.0 bits (26), Expect = 0.002 Identities = 57/67 (85%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 381 gtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggcaggtttgaaac 440 ||| |||| |||||||||||| || | |||| |||| |||||||||||||||||||| | Sbjct: 1323 gtgatagccgaaaatttccatactaggttcag-tgtaggggttgtaggcaggtttgaagc 1265 Query: 441 gcagctt 447 | ||||| Sbjct: 1264 ggagctt 1258
>gb|AY094460.1| Arabidopsis thaliana AT4g39280/T22F8_180 mRNA, complete cds Length = 1603 Score = 52.0 bits (26), Expect = 0.002 Identities = 195/252 (77%), Gaps = 1/252 (0%) Strand = Plus / Minus Query: 250 atcattgntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagt 309 ||||||| ||| |||||||| || |||||||| ||||| || ||||| |||| || || Sbjct: 1382 atcattgttggtctttcaagagagagaccccaagcgatgactctaacatcctcggggaga 1323 Query: 310 cccatgggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctc 369 ||||| || || | |||||| || |||||||| || ||||| | || |||||||| || Sbjct: 1322 cccatcggtagaagcatttcgggtctgaacatcccagagtttccaatctccacccacttc 1263 Query: 370 ttcanaccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggc 429 | ||| || || ||||||||||| |||||||||| || |||| |||||||| || Sbjct: 1262 cctaaaccttcatggtagctgaaaatctccatgcttggctc-tgtgtaagggttgtaagc 1204 Query: 430 aggtttgaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctat 489 || |||||||||| || ||||| |||| | |||||||| || || |||||||| || Sbjct: 1203 tggcttgaaacgcaatttcgacatccctaagcgtgagaagaagtcttctaatacaccaat 1144 Query: 490 cagatcaccaag 501 ||| || ||||| Sbjct: 1143 caggtctccaag 1132
>emb|BX826939.1|CNS0A42A Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB78ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1609 Score = 52.0 bits (26), Expect = 0.002 Identities = 195/252 (77%), Gaps = 1/252 (0%) Strand = Plus / Minus Query: 250 atcattgntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagt 309 ||||||| ||| |||||||| || |||||||| ||||| || ||||| |||| || || Sbjct: 1380 atcattgttggtctttcaagagagagaccccaagcgatgactctaacatcctcggggaga 1321 Query: 310 cccatgggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctc 369 ||||| || || | |||||| || |||||||| || ||||| | || |||||||| || Sbjct: 1320 cccatcggtagaagcatttcgggtctgaacatcccagagtttccaatctccacccacttc 1261 Query: 370 ttcanaccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggc 429 | ||| || || ||||||||||| |||||||||| || |||| |||||||| || Sbjct: 1260 cctaaaccttcatggtagctgaaaatctccatgcttggctc-tgtgtaagggttgtaagc 1202 Query: 430 aggtttgaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctat 489 || |||||||||| || ||||| |||| | |||||||| || || |||||||| || Sbjct: 1201 tggcttgaaacgcaatttcgacatccctaagcgtgagaagaagtcttctaatacaccaat 1142 Query: 490 cagatcaccaag 501 ||| || ||||| Sbjct: 1141 caggtctccaag 1130
>gb|BT002310.1| Arabidopsis thaliana At4g39280/T22F8_180 mRNA, complete cds Length = 1458 Score = 52.0 bits (26), Expect = 0.002 Identities = 195/252 (77%), Gaps = 1/252 (0%) Strand = Plus / Minus Query: 250 atcattgntggcctttcaagtgaaagaccccatgcgataacattaacaccctctggcagt 309 ||||||| ||| |||||||| || |||||||| ||||| || ||||| |||| || || Sbjct: 1364 atcattgttggtctttcaagagagagaccccaagcgatgactctaacatcctcggggaga 1305 Query: 310 cccatgggaagtaacatttcaggcctgaacatgcctgagttgnctatttccacccatctc 369 ||||| || || | |||||| || |||||||| || ||||| | || |||||||| || Sbjct: 1304 cccatcggtagaagcatttcgggtctgaacatcccagagtttccaatctccacccacttc 1245 Query: 370 ttcanaccatcgtgntagctgaaaatttccatgcttgnttcanctgtacgggttgtaggc 429 | ||| || || ||||||||||| |||||||||| || |||| |||||||| || Sbjct: 1244 cctaaaccttcatggtagctgaaaatctccatgcttggctc-tgtgtaagggttgtaagc 1186 Query: 430 aggtttgaaacgcagctttgacatgcctagtctggagaagaaatcctccaatacacctat 489 || |||||||||| || ||||| |||| | |||||||| || || |||||||| || Sbjct: 1185 tggcttgaaacgcaatttcgacatccctaagcgtgagaagaagtcttctaatacaccaat 1126 Query: 490 cagatcaccaag 501 ||| || ||||| Sbjct: 1125 caggtctccaag 1114
>ref|XM_759164.1| Theileria parva strain Muguga chromosome 4 phenylalanyl-tRNA synthetase subunit alpha (TP04_0622) partial mRNA Length = 1554 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 300 ctctggcagtcccatgggaagtaacatttcaggcctgaa 338 |||||| |||||||||||||| | |||||| |||||||| Sbjct: 1437 ctctgggagtcccatgggaaggagcatttcgggcctgaa 1399
>ref|XM_663085.1| Cryptosporidium hominis TU502 phenylalanyl-trna synthetase-like protein (Chro.30378) partial mRNA Length = 1530 Score = 44.1 bits (22), Expect = 0.50 Identities = 33/37 (89%) Strand = Plus / Minus Query: 248 taatcattgntggcctttcaagtgaaagaccccatgc 284 ||||||| | |||||||||||| ||||| |||||||| Sbjct: 1471 taatcatcgttggcctttcaagagaaagtccccatgc 1435
>ref|XM_626883.1| Cryptosporidium parvum Iowa II putative phenylalanyl-tRNA synthetase (cgd3_3320), partial mRNA Length = 1545 Score = 44.1 bits (22), Expect = 0.50 Identities = 33/37 (89%) Strand = Plus / Minus Query: 248 taatcattgntggcctttcaagtgaaagaccccatgc 284 ||||||| | |||||||||||| ||||| |||||||| Sbjct: 1486 taatcatcgttggcctttcaagagaaagcccccatgc 1450
>dbj|AK222295.1| Ciona intestinalis cDNA, clone:ciad035p19, full insert sequence Length = 1170 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 414 tgtacgggttgtaggcaggtttgaaacgcagct 446 |||||||||| || ||||| ||||||||||||| Sbjct: 796 tgtacgggttataagcaggcttgaaacgcagct 828
>gb|AC087074.1|AC087074 Caenorhabditis briggsae cosmid CB010J11, complete sequence Length = 91433 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Minus Query: 302 ctggcagtcccatgggaagtaacatttcaggcctgaacatgcctgagtt 350 ||||||||||||| ||||| | ||||||||| | |||||| || ||||| Sbjct: 29586 ctggcagtcccatcggaagaagcatttcagggcggaacattccagagtt 29538
>dbj|AK116480.1| Ciona intestinalis cDNA, clone:citb042h18, full insert sequence Length = 1646 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 414 tgtacgggttgtaggcaggtttgaaacgcagct 446 |||||||||| || ||||| ||||||||||||| Sbjct: 1249 tgtacgggttataagcaggcttgaaacgcagct 1217
>emb|CT010576.9| Mouse DNA sequence from clone RP23-193B21 on chromosome 16, complete sequence Length = 208110 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tcccatgggaagtaacattt 328 |||||||||||||||||||| Sbjct: 27813 tcccatgggaagtaacattt 27832
>ref|XM_381280.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01104.1) partial mRNA Length = 1536 Score = 40.1 bits (20), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 379 tcgtgntagctgaaaatttccat 401 ||||| ||||||||||||||||| Sbjct: 1310 tcgtggtagctgaaaatttccat 1288
>gb|AC121798.3| Mus musculus BAC clone RP23-426H21 from chromosome 2, complete sequence Length = 209189 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaccacaaagaaacatcatt 118 |||||||||||||||||||| Sbjct: 73138 aaccacaaagaaacatcatt 73119
>emb|AL603923.7| Mouse DNA sequence from clone RP23-180L15 on chromosome 11 Contains a plexin D1 (Plxnd1) pseudogene, the genes for olfactory receptors MOR135-9, -26 and -6 the gene for a novel olfactory receptor MOR135 family member, a ubiquitin (Ub) pseudogene, an olfactory receptor MOR135 pseudogene and the 3' end of the gene for a novel KRAB box domain containing protein, complete sequence Length = 141596 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tacaacatgtgtgtatttcc 51 |||||||||||||||||||| Sbjct: 25299 tacaacatgtgtgtatttcc 25280
>gb|AC154654.2| Mus musculus BAC clone RP24-262O15 from chromosome 16, complete sequence Length = 173200 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tcccatgggaagtaacattt 328 |||||||||||||||||||| Sbjct: 5940 tcccatgggaagtaacattt 5921
>gb|AC022479.3|AC022479 Homo sapiens BAC clone RP11-217F11 from 3, complete sequence Length = 156535 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctttcaagtgaaagacccca 281 |||||||||||||||||||| Sbjct: 32031 ctttcaagtgaaagacccca 32050
>gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168551 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gggaagtaacatttcaggcc 334 |||||||||||||||||||| Sbjct: 83918 gggaagtaacatttcaggcc 83937
>gb|AC092988.6| Homo sapiens 3 BAC RP11-217F11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156528 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctttcaagtgaaagacccca 281 |||||||||||||||||||| Sbjct: 32030 ctttcaagtgaaagacccca 32049
>emb|BX571957.10| Zebrafish DNA sequence from clone DKEYP-117B4 in linkage group 18, complete sequence Length = 179945 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 503 gtcaaaccataatcacaaataagacctt 530 |||| |||||||| |||||||||||||| Sbjct: 144990 gtcataccataatgacaaataagacctt 145017
>emb|AL928613.3| Mouse DNA sequence from clone RP23-33E20 on chromosome 2, complete sequence Length = 102804 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aaccacaaagaaacatcatt 118 |||||||||||||||||||| Sbjct: 73428 aaccacaaagaaacatcatt 73409 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,175,170 Number of Sequences: 3902068 Number of extensions: 4175170 Number of successful extensions: 84870 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 84767 Number of HSP's gapped (non-prelim): 104 length of query: 580 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 557 effective length of database: 17,143,297,704 effective search space: 9548816821128 effective search space used: 9548816821128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)