>tpg|BK005644.1| TPA: TPA_inf: Triticum aestivum histidine-containing
           phosphotransfer protein 2 (HP) mRNA, complete cds
          Length = 1212

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 5   tttaggctcttancctatgagcatcttgntatctttnannaaactgtaggtgggcacctc 64
           |||||||||||| ||||||||||||||| ||||||  |  ||||||||||||||||||||
Sbjct: 286 tttaggctcttagcctatgagcatcttgttatcttccaagaaactgtaggtgggcacctc 345

                
Query: 65  aaggt 69
           |||||
Sbjct: 346 aaggt 350

>gb|BT017520.1| Zea mays clone EL01N0421A02.c mRNA sequence
          Length = 1172

 Score = 67.9 bits (34), Expect = 6e-09
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                             
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggat 94
           ||||||||||| || ||||| |||||| ||||||||||||||||||||||
Sbjct: 867 aaactgtaggtcgggacctcgaggttgaacggggcagggcccttgcggat 818

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 83/102 (81%)
 Strand = Plus / Minus

                                                                            
Query: 8        aggctcttancctatgagcatcttgntatctttnannaaactgtaggtgggcacctcaag 67
                ||||||||| |||||||| | |||| | || |  |  ||||||||||| || ||||| ||
Sbjct: 19696266 aggctcttagcctatgaggagcttgttctcctccaagaaactgtaggtagggacctccag 19696207

                                                          
Query: 68       gttgtacggggcagggcccttgcggattctgccagagatgtc 109
                |||| | || || ||||||||||| || ||||||||||||||
Sbjct: 19696206 gttgaatggagcggggcccttgcgaatcctgccagagatgtc 19696165

>dbj|AK059519.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C04, full
           insert sequence
          Length = 1242

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 83/102 (81%)
 Strand = Plus / Minus

                                                                       
Query: 8   aggctcttancctatgagcatcttgntatctttnannaaactgtaggtgggcacctcaag 67
           ||||||||| |||||||| | |||| | || |  |  ||||||||||| || ||||| ||
Sbjct: 972 aggctcttagcctatgaggagcttgttctcctccaagaaactgtaggtagggacctccag 913

                                                     
Query: 68  gttgtacggggcagggcccttgcggattctgccagagatgtc 109
           |||| | || || ||||||||||| || ||||||||||||||
Sbjct: 912 gttgaatggagcggggcccttgcgaatcctgccagagatgtc 871

>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07,
              complete sequence
          Length = 166410

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 83/102 (81%)
 Strand = Plus / Minus

                                                                          
Query: 8      aggctcttancctatgagcatcttgntatctttnannaaactgtaggtgggcacctcaag 67
              ||||||||| |||||||| | |||| | || |  |  ||||||||||| || ||||| ||
Sbjct: 146992 aggctcttagcctatgaggagcttgttctcctccaagaaactgtaggtagggacctccag 146933

                                                        
Query: 68     gttgtacggggcagggcccttgcggattctgccagagatgtc 109
              |||| | || || ||||||||||| || ||||||||||||||
Sbjct: 146932 gttgaatggagcggggcccttgcgaatcctgccagagatgtc 146891

>gb|BT018238.1| Zea mays clone EL01N0563B05.c mRNA sequence
          Length = 971

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggat 94
           ||||||||||| || ||||| |||||| |||| |||||||||||||||||
Sbjct: 755 aaactgtaggtcgggacctcgaggttgaacggcgcagggcccttgcggat 706

>gb|AY109584.1| Zea mays CL2436_1 mRNA sequence
          Length = 1746

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 45   aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggat 94
            ||||||||||| || ||||| |||||| |||| |||||||||||||||||
Sbjct: 1407 aaactgtaggtagggacctcgaggttgaacggcgcagggcccttgcggat 1358

>gb|M77224.1|MZERFESPA Zea mays mitochondrial Rieske Fe-S protein mRNA, complete cds
          Length = 1197

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggat 94
           ||||||||||| || ||||| |||||| |||| |||||||||||||||||
Sbjct: 898 aaactgtaggtagggacctcgaggttgaacggcgcagggcccttgcggat 849

>ref|XM_472343.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggattctgccagag 104
           ||||||||||| || ||||| |||||| | || || ||||||||||| || |||||||||
Sbjct: 806 aaactgtaggtagggacctccaggttgaatggagcggggcccttgcgaatcctgccagag 747

                
Query: 105 atgtc 109
           |||||
Sbjct: 746 atgtc 742

>gb|L16813.1|TOBFESD Nicotiana tabacum clone 32.10 Rieske iron-sulfur protein mRNA,
           complete cds; mitochondrial
          Length = 1121

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggattctgccagag 104
           ||||||||||| |||||||| || || || || ||||| || ||||| || || ||||||
Sbjct: 875 aaactgtaggtaggcacctccagattatatggcgcaggtcctttgcgaatcctaccagag 816

                
Query: 105 atgtc 109
           |||||
Sbjct: 815 atgtc 811

>gb|L16812.1|TOBFESC Nicotiana tabacum clone 36.14 Rieske iron-sulfur protein mRNA,
           complete cds; mitochondrial
          Length = 1286

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 57  ggcacctcaaggttgtacggggcagggcccttgcggattctgccagagatgtc 109
           |||||||| || || || || ||||| ||||||||||| || |||||||||||
Sbjct: 986 ggcacctccagattatatggtgcaggtcccttgcggatcctaccagagatgtc 934

>gb|L16811.1|TOBFESB Nicotiana tabacum clone 8.8 Rieske iron-sulfur protein mRNA,
           complete cds; mitochondrial
          Length = 1202

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggattctgccagag 104
           ||||||||||| |||||||| || || || || ||||| || ||||| || || ||||||
Sbjct: 891 aaactgtaggtaggcacctccagattatatggtgcaggtcctttgcgaatcctaccagag 832

                
Query: 105 atgtc 109
           |||||
Sbjct: 831 atgtc 827

>gb|L16810.1|TOBFESA Nicotiana tabacum clone 17.12 Rieske iron-sulfur protein mRNA,
           complete cds; mitochondrial
          Length = 1210

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 57  ggcacctcaaggttgtacggggcagggcccttgcggattctgccagagatgtc 109
           |||||||| || || || || ||||| ||||||||||| || |||||||||||
Sbjct: 926 ggcacctccagattatatggtgcaggtcccttgcggatcctaccagagatgtc 874

>gb|DQ207870.1| Solanum tuberosum clone 087E11 rieske iron-sulfur protein-like
           mRNA, complete cds
          Length = 1098

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggattctgccagag 104
           ||||||||||| |||||||| || || ||||| || || || ||||| || || ||||||
Sbjct: 825 aaactgtaggtaggcacctccagattatacggtgcgggtcctttgcgaatcctaccagag 766

                
Query: 105 atgtc 109
           |||||
Sbjct: 765 atgtc 761

>gb|BT014059.1| Lycopersicon esculentum clone 133157F, mRNA sequence
          Length = 1087

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 45  aaactgtaggtgggcacctcaaggttgtacggggcagggcccttgcggattctgccagag 104
           ||||||||||| |||||||| || || ||||| || || || ||||| || || ||||||
Sbjct: 837 aaactgtaggtaggcacctccagattatacggtgcgggtcctttgcgaatcctaccagag 778

                
Query: 105 atgtc 109
           |||||
Sbjct: 777 atgtc 773

>emb|CT033644.1| Platynereis dumerilii EST IB0AAA16DC02EM1
          Length = 957

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 75  ggggcagggcccttgcggattctgccaga 103
           ||||| || ||||||||||||||||||||
Sbjct: 804 ggggcgggtcccttgcggattctgccaga 776

>emb|CT033533.1| Platynereis dumerilii EST IB0AAA18DC05EM1
          Length = 864

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 75  ggggcagggcccttgcggattctgccaga 103
           ||||| || ||||||||||||||||||||
Sbjct: 826 ggggcgggtcccttgcggattctgccaga 798

>emb|CT033153.1| Platynereis dumerilii EST IB0AAA25DC05EM1
          Length = 915

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 75  ggggcagggcccttgcggattctgccaga 103
           ||||| || ||||||||||||||||||||
Sbjct: 793 ggggcgggtcccttgcggattctgccaga 765

>gb|M77225.1|TOBRFESP Nicotiana tabacum mitochondrial Rieske Fe-S protein mRNA, complete
           cds
          Length = 956

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 57  ggcacctcaaggttgtacggggcagggcccttgcggattctgccagagatgtc 109
           |||||||| || || || || ||||| ||||||||||| || |||||||||||
Sbjct: 734 ggcacctccagattatatggtgcaggtcccttgcggatcctaccagagatgtc 682

>ref|XM_466001.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1157

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 66  aggttgtacggggcagggcccttgcggattct 97
           |||||||| || ||||||||||| ||||||||
Sbjct: 857 aggttgtatggtgcagggcccttacggattct 826

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 66       aggttgtacggggcagggcccttgcggattct 97
                |||||||| || ||||||||||| ||||||||
Sbjct: 19000643 aggttgtatggtgcagggcccttacggattct 19000674

>dbj|AP005842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0003H22
          Length = 68256

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 66    aggttgtacggggcagggcccttgcggattct 97
             |||||||| || ||||||||||| ||||||||
Sbjct: 55964 aggttgtatggtgcagggcccttacggattct 55995

>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0047A17
          Length = 149142

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 66   aggttgtacggggcagggcccttgcggattct 97
            |||||||| || ||||||||||| ||||||||
Sbjct: 6164 aggttgtatggtgcagggcccttacggattct 6195

>dbj|AK102815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108M09, full
           insert sequence
          Length = 1157

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 66  aggttgtacggggcagggcccttgcggattct 97
           |||||||| || ||||||||||| ||||||||
Sbjct: 857 aggttgtatggtgcagggcccttacggattct 826

>emb|AJ719669.1| Gallus gallus mRNA for hypothetical protein, clone 5b19
          Length = 1070

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 46/55 (83%)
 Strand = Plus / Minus

                                                                  
Query: 50  gtaggtgggcacctcaaggttgtacggggcagggcccttgcggattctgccagag 104
           |||||| || ||||| ||||| || |||||||| || || | |||||||||||||
Sbjct: 845 gtaggttggaacctccaggttatagggggcaggacctttcctgattctgccagag 791

>ref|NM_001005843.1| Gallus gallus ubiquinol-cytochrome c reductase, Rieske iron-sulfur
           polypeptide 1 (UQCRFS1), mRNA
          Length = 1070

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 46/55 (83%)
 Strand = Plus / Minus

                                                                  
Query: 50  gtaggtgggcacctcaaggttgtacggggcagggcccttgcggattctgccagag 104
           |||||| || ||||| ||||| || |||||||| || || | |||||||||||||
Sbjct: 845 gtaggttggaacctccaggttatagggggcaggacctttcctgattctgccagag 791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 437,033
Number of Sequences: 3902068
Number of extensions: 437033
Number of successful extensions: 21756
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21708
Number of HSP's gapped (non-prelim): 48
length of query: 109
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 88
effective length of database: 17,151,101,840
effective search space: 1509296961920
effective search space used: 1509296961920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)