Clone Information

BLAST Search Result

Clone Name	rbags11e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine syntha...	50	5e-06
2	RLUB_XYLFT (Q87BI2) Ribosomal large subunit pseudouridine syntha...	49	2e-05
3	RLUB_XYLFA (Q9PAP2) Ribosomal large subunit pseudouridine syntha...	49	2e-05
4	RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine syntha...	48	3e-05
5	RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine syntha...	46	9e-05
6	Y554_AQUAE (O66829) Hypothetical RNA pseudouridine synthase aq_5...	45	3e-04
7	RLUB_BUCAI (P57369) Ribosomal large subunit pseudouridine syntha...	41	0.003
8	RLUB_VIBVU (Q8D8C0) Ribosomal large subunit pseudouridine syntha...	41	0.004
9	RLUB_VIBCH (Q9KSS7) Ribosomal large subunit pseudouridine syntha...	40	0.006
10	Y1464_AQUAE (O67444) Hypothetical RNA pseudouridine synthase aq_...	40	0.008
11	RLUB_SALTY (Q8ZP51) Ribosomal large subunit pseudouridine syntha...	39	0.011
12	RLUB_SALTI (Q8Z7D5) Ribosomal large subunit pseudouridine syntha...	39	0.011
13	RSUA_SALTY (P65840) Ribosomal small subunit pseudouridine syntha...	39	0.011
14	RSUA_SALTI (P65841) Ribosomal small subunit pseudouridine syntha...	39	0.011
15	RLUB_YERPE (Q8ZEG0) Ribosomal large subunit pseudouridine syntha...	39	0.011
16	RLUE_PSEAE (Q9HX48) Ribosomal large subunit pseudouridine syntha...	39	0.014
17	RSUA_YERPE (Q8ZGM2) Ribosomal small subunit pseudouridine syntha...	39	0.018
18	RSUA_SHIFL (P0AA46) Ribosomal small subunit pseudouridine syntha...	39	0.018
19	RSUA_ECOLI (P0AA43) Ribosomal small subunit pseudouridine syntha...	39	0.018
20	RSUA_ECOL6 (P0AA44) Ribosomal small subunit pseudouridine syntha...	39	0.018
21	RSUA_ECO57 (P0AA45) Ribosomal small subunit pseudouridine syntha...	39	0.018
22	RLUB_BUCAP (P42395) Ribosomal large subunit pseudouridine syntha...	39	0.018
23	YTZF_BACSU (O32068) Hypothetical RNA pseudouridine synthase ytzF...	38	0.031
24	RLUB_VIBPA (Q87NB7) Ribosomal large subunit pseudouridine syntha...	38	0.031
25	Y807_RICCN (Q92HG4) Hypothetical RNA pseudouridine synthase RC08...	38	0.031
26	RLUB_SHIFL (P59815) Ribosomal large subunit pseudouridine syntha...	38	0.031
27	RLUB_ECO57 (Q8X4Q8) Ribosomal large subunit pseudouridine syntha...	38	0.031
28	RLUB_ECOLI (P37765) Ribosomal large subunit pseudouridine syntha...	38	0.031
29	RLUB_ECOL6 (Q8FHV4) Ribosomal large subunit pseudouridine syntha...	38	0.031
30	RSUA_VIBCH (Q9KRK5) Ribosomal small subunit pseudouridine syntha...	37	0.041
31	RLUE_PASMU (Q9CKK7) Ribosomal large subunit pseudouridine syntha...	37	0.054
32	RLUB_HAEIN (P45104) Ribosomal large subunit pseudouridine syntha...	36	0.12
33	RSUA_VIBVU (Q8D8X2) Ribosomal small subunit pseudouridine syntha...	35	0.16
34	RLUE_SALTI (Q8Z7G6) Ribosomal large subunit pseudouridine syntha...	35	0.20
35	Y1738_MYCBO (P65843) Hypothetical RNA pseudouridine synthase Mb1...	34	0.45
36	Y1711_MYCTU (P65842) Hypothetical RNA pseudouridine synthase Rv1...	34	0.45
37	RLUB_PASMU (Q9CMY9) Ribosomal large subunit pseudouridine syntha...	34	0.45
38	Y1459_HELPY (P55986) Hypothetical RNA pseudouridine synthase HP1...	33	0.59
39	RSUA_PASMU (Q9CPN4) Ribosomal small subunit pseudouridine syntha...	33	0.78
40	RSUA_HAEIN (P45124) Ribosomal small subunit pseudouridine syntha...	33	0.78
41	Y544_RICPR (Q9ZD06) Hypothetical RNA pseudouridine synthase RP54...	33	1.0
42	RLUB_BACSU (P35159) Ribosomal large subunit pseudouridine syntha...	32	1.3
43	RLUE_SALTY (Q8ZPZ1) Ribosomal large subunit pseudouridine syntha...	32	2.3
44	RLUE_ECO57 (Q8X724) Ribosomal large subunit pseudouridine syntha...	32	2.3
45	Y129_BORBU (O51155) Hypothetical RNA pseudouridine synthase BB01...	31	2.9
46	YE59_HELPJ (Q9ZJG0) Hypothetical RNA pseudouridine synthase jhp_...	31	2.9
47	RLUE_SHIFL (Q83LF6) Ribosomal large subunit pseudouridine syntha...	31	2.9
48	RLUE_ECOLI (P75966) Ribosomal large subunit pseudouridine syntha...	31	2.9
49	RLUE_ECOL6 (Q8FIB6) Ribosomal large subunit pseudouridine syntha...	31	2.9
50	RLUE_YERPE (Q8ZFQ3) Ribosomal large subunit pseudouridine syntha...	31	3.8
51	YQ38_CAEEL (Q09459) Hypothetical protein C09G5.8	30	6.6
52	POL_HTL1C (P14078) Pol polyprotein [Contains: Reverse transcript...	30	6.6
53	POL_HTL1A (P03362) Pol polyprotein [Contains: Reverse transcript...	30	6.6
54	RSUA_PSEAE (Q9I5J6) Ribosomal small subunit pseudouridine syntha...	30	6.6

>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 492

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = -3

Query: 578 KIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           ++VV EGRN EVR L ++ G +V  LKR R G+  LP +L  G+ VEL +  + AL
Sbjct: 212 RVVVKEGRNREVRRLWESQGCQVSRLKRTRYGKVSLPRELLRGQSVELAQEKVDAL 267

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>RLUB_XYLFT (Q87BI2) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 476

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 25/56 (44%), Positives = 35/56 (62%)
 Frame = -3

Query: 578 KIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           ++VV EGRN EVR L ++ G +V  LKR R G   LP +L  G+  EL +  ++AL
Sbjct: 211 RVVVKEGRNREVRRLWESQGCQVSRLKRTRYGSVLLPRELLRGQSTELPKTQVEAL 266

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>RLUB_XYLFA (Q9PAP2) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 476

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 25/56 (44%), Positives = 35/56 (62%)
 Frame = -3

Query: 578 KIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           ++VV EGRN EVR L ++ G +V  LKR R G   LP +L  G+  EL +  ++AL
Sbjct: 211 RVVVKEGRNREVRRLWESQGCQVSRLKRTRYGSVLLPRELLRGQSTELPKTQVEAL 266

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>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 25/56 (44%), Positives = 35/56 (62%)
 Frame = -3

Query: 578 KIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           ++VV EGRN EVR L ++ G +V  LKR R G+  LP +L  G  VE+ +  + AL
Sbjct: 212 RVVVKEGRNREVRRLWESQGCQVSRLKRSRYGKISLPRELLRGHSVEVAQDKVDAL 267

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>RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 386

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = -3

Query: 572 VVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           VV EGRN EVR L ++ GL V  LKRVR G   L S+L +G+  E+ + +I  L
Sbjct: 197 VVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDIL 250

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>Y554_AQUAE (O66829) Hypothetical RNA pseudouridine synthase aq_554 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 238

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 22/57 (38%), Positives = 34/57 (59%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           +K ++ EGR+H V+ L +  G  V  LKR R+G  RL  ++  G+  EL E ++K L
Sbjct: 172 VKAILTEGRHHVVKRLFKAVGHNVVYLKRTRVGNLRLDENMEPGEWRELTEEEVKEL 228

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>RLUB_BUCAI (P57369) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 250

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -3

Query: 623 VEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKM 444
           ++ +D     K    K V+ EGRN E+R + Q    +V  L R+R G   LP +L +G  
Sbjct: 171 IQTIDHACSKKNKWFKGVLCEGRNREIRSMWQAVQCQVSRLIRIRYGNIFLPKNLKLGDW 230

Query: 443 VELKEADIKAL 411
            EL    +  L
Sbjct: 231 SELSSESVNNL 241

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>RLUB_VIBVU (Q8D8C0) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 320

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 23/55 (41%), Positives = 31/55 (56%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           +V++EGRN EVR L ++    V  LKRVR G   L   L  G  +EL+  D+  L
Sbjct: 185 VVINEGRNREVRRLWESQDCTVSRLKRVRYGDIYLDKKLPRGGWMELELKDVNYL 239

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>RLUB_VIBCH (Q9KSS7) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 321

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVEL 435
           +V++EGRN EVR L ++ G  V  LKRVR G   L   L  G  +EL
Sbjct: 185 VVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231

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>Y1464_AQUAE (O67444) Hypothetical RNA pseudouridine synthase aq_1464 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 249

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = -3

Query: 593 KRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKA 414
           K   L+I  HEGR H V+  +   G KV  LKR+ IG  +L   L  GK  EL + ++  
Sbjct: 176 KNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWRELNQGELAQ 234

Query: 413 L 411
           L
Sbjct: 235 L 235

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>RLUB_SALTY (Q8ZP51) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 291

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKALDG 405
           + + EGRN EVR L +  G++V  L RVR G   LP  L  G   EL  A    L G
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRG 242

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>RLUB_SALTI (Q8Z7D5) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 291

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 24/57 (42%), Positives = 29/57 (50%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKALDG 405
           + + EGRN EVR L +  G++V  L RVR G   LP  L  G   EL  A    L G
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDFAQTNYLRG 242

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>RSUA_SALTY (P65840) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = -3

Query: 629 DLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIG 450
           DL +P   +  T  +++++ + EGR H+V+ +    G +V  L R RIG   L  +L  G
Sbjct: 159 DLTKPATLEVITP-VQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPG 217

Query: 449 KMVELKEADIKAL 411
           +   L E +I ++
Sbjct: 218 EYRPLTEEEIASV 230

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>RSUA_SALTI (P65841) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = -3

Query: 629 DLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIG 450
           DL +P   +  T  +++++ + EGR H+V+ +    G +V  L R RIG   L  +L  G
Sbjct: 159 DLTKPATLEVITP-VQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPG 217

Query: 449 KMVELKEADIKAL 411
           +   L E +I ++
Sbjct: 218 EYRPLTEEEIASV 230

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>RLUB_YERPE (Q8ZEG0) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 318

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 24/54 (44%), Positives = 30/54 (55%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKA 414
           + + EGRN EVR L +  G++V  L RVR G   LP  L  G   EL   D+KA
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDINLPKGLPRGGWTEL---DLKA 236

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>RLUE_PSEAE (Q9HX48) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 189

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVEL 435
           L++V+ EGRN +VR +    GL    L RVRIG + L   LG+G+  E+
Sbjct: 137 LELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGPWSL-DGLGLGEWREV 184

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>RSUA_YERPE (Q8ZGM2) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 235

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -3

Query: 650 DGVKVVPDLVEPLDTQADT-KRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFR 474
           DGV++  +       Q D  +  R+++ + EGR H+V+ +    G +V  L R RIG   
Sbjct: 150 DGVQLYNEKSLTKPAQLDVIEPQRVRLTISEGRYHQVKRMFAAVGNRVIELHRERIGDIT 209

Query: 473 LPSDLGIGKMVELKEADIKAL 411
           L  DL  G+   L   +I ++
Sbjct: 210 LDDDLAPGEYRPLTTEEIASV 230

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>RSUA_SHIFL (P0AA46) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = -3

Query: 629 DLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIG 450
           DL +P   +  T   ++++ + EGR H+V+ +    G  V  L R RIG   L +DL  G
Sbjct: 159 DLTKPAVLEVITPT-QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217

Query: 449 KMVELKEADIKAL 411
           +   L E +I ++
Sbjct: 218 EYRPLTEEEIASV 230

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>RSUA_ECOLI (P0AA43) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = -3

Query: 629 DLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIG 450
           DL +P   +  T   ++++ + EGR H+V+ +    G  V  L R RIG   L +DL  G
Sbjct: 159 DLTKPAVLEVITPT-QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217

Query: 449 KMVELKEADIKAL 411
           +   L E +I ++
Sbjct: 218 EYRPLTEEEIASV 230

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>RSUA_ECOL6 (P0AA44) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = -3

Query: 629 DLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIG 450
           DL +P   +  T   ++++ + EGR H+V+ +    G  V  L R RIG   L +DL  G
Sbjct: 159 DLTKPAVLEVITPT-QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217

Query: 449 KMVELKEADIKAL 411
           +   L E +I ++
Sbjct: 218 EYRPLTEEEIASV 230

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>RSUA_ECO57 (P0AA45) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 23/73 (31%), Positives = 38/73 (52%)
 Frame = -3

Query: 629 DLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIG 450
           DL +P   +  T   ++++ + EGR H+V+ +    G  V  L R RIG   L +DL  G
Sbjct: 159 DLTKPAVLEVITPT-QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217

Query: 449 KMVELKEADIKAL 411
           +   L E +I ++
Sbjct: 218 EYRPLTEEEIASV 230

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>RLUB_BUCAP (P42395) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 257

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = -3

Query: 647 GVKVVPDLVE-----PLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIG 483
           GVK++   V      PL  + + K    K ++ EG+N E+R + ++   +V  L RVR G
Sbjct: 158 GVKIIHGYVSFKEIVPLYDKKEGKNKWFKGILCEGKNREIRLMFKSIQCQVNQLIRVRYG 217

Query: 482 RFRLPSDLGIGKMVELKEADIKAL 411
              LP +L  G+ + L    +K L
Sbjct: 218 NIILPKNLKEGQWMMLNSIFLKKL 241

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>YTZF_BACSU (O32068) Hypothetical RNA pseudouridine synthase ytzF (EC 5.4.99.-)|
           (RNA-uridine isomerase) (RNA pseudouridylate synthase)
          Length = 157

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 19/64 (29%), Positives = 36/64 (56%)
 Frame = -3

Query: 599 DTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADI 420
           D+    + + + EG+ H+V+++ +  G +V  LKR+ +GR  L   L  G+  EL E ++
Sbjct: 90  DSGNTVIYLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYRELTEEEL 149

Query: 419 KALD 408
             L+
Sbjct: 150 HLLN 153

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>RLUB_VIBPA (Q87NB7) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 312

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 22/55 (40%), Positives = 30/55 (54%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           +V++EGRN EVR L ++    V  LKRVR G   L   L  G  +EL   ++  L
Sbjct: 185 VVINEGRNREVRRLWESQECTVSRLKRVRYGDIFLDKKLPRGGWMELDLKEVNYL 239

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>Y807_RICCN (Q92HG4) Hypothetical RNA pseudouridine synthase RC0807 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 230

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 25/84 (29%), Positives = 44/84 (52%)
 Frame = -3

Query: 653 IDGVKVVPDLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFR 474
           IDG+   P  ++ L  + +      ++V+ EG+N E+R + +  GLKV  L R++ G F 
Sbjct: 153 IDGIFYNPHSIKLL--KQNKTNCWFEVVLFEGKNREIRRIFEYCGLKVNKLIRIQYGSFT 210

Query: 473 LPSDLGIGKMVELKEADIKALDGN 402
           + +     K  + KE + K L+ N
Sbjct: 211 IDN----LKPGDYKEINNKILENN 230

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>RLUB_SHIFL (P59815) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 290

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + + EGRN EVR L +  G++V  L RVR G   LP  L  G   EL  A    L
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240

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>RLUB_ECO57 (Q8X4Q8) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 290

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + + EGRN EVR L +  G++V  L RVR G   LP  L  G   EL  A    L
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240

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>RLUB_ECOLI (P37765) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 291

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + + EGRN EVR L +  G++V  L RVR G   LP  L  G   EL  A    L
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240

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>RLUB_ECOL6 (Q8FHV4) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 291

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + + EGRN EVR L +  G++V  L RVR G   LP  L  G   EL  A    L
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240

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>RSUA_VIBCH (Q9KRK5) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 231

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + +HEG+ H+V+ +    G KV  L R RIG+  L   L  G+   L E ++ ++
Sbjct: 175 LTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEVASI 229

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>RLUE_PASMU (Q9CKK7) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 241

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           L+I +HEGRN +VR +  + G     L R ++  F L ++L  G+  +L E ++ AL
Sbjct: 178 LEIKIHEGRNRQVRRMTAHIGFPTLRLIRYQMALFNL-ANLEQGQYRQLSEVELTAL 233

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>RLUB_HAEIN (P45104) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 357

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + + EGRN EVR L ++ G++V  L R+R G  +L   L  G   E+   ++  L
Sbjct: 259 VTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYL 313

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>RSUA_VIBVU (Q8D8X2) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 233

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + +HEG+ H+V+ +    G KV  L R RIG   L   L  G+   L + +I ++
Sbjct: 177 LTIHEGKYHQVKRMFAALGNKVEQLHRERIGAIELDESLEPGEYRYLTQEEIDSV 231

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>RLUE_SALTI (Q8Z7G6) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 221

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
 Frame = -3

Query: 665 GGTVIDGVKVV--PDLV----EPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYA 504
           G T+  G+++V  PD +     P+  + +     LK+ ++EGRNH+VR +  + G     
Sbjct: 134 GPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNHQVRRMTAHVGHPTLR 193

Query: 503 LKRVRIGRFRLPSDLGIGKMVELKE 429
           L R  +G + L + L  G+  E+ +
Sbjct: 194 LIRYSMGDYTL-NGLDNGQWCEIAQ 217

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>Y1738_MYCBO (P65843) Hypothetical RNA pseudouridine synthase Mb1738 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 254

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRL 471
           +++ +HEGRN  VR L+  AG  V AL R  IG   L
Sbjct: 193 VRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIGAVSL 229

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>Y1711_MYCTU (P65842) Hypothetical RNA pseudouridine synthase Rv1711/MT1751.1|
           (EC 5.4.99.-) (RNA-uridine isomerase) (RNA
           pseudouridylate synthase)
          Length = 254

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRL 471
           +++ +HEGRN  VR L+  AG  V AL R  IG   L
Sbjct: 193 VRVTLHEGRNRIVRRLLAAAGFPVEALVRTDIGAVSL 229

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>RLUB_PASMU (Q9CMY9) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 345

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 575 IVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + + EGRN EVR L ++ G++V  L R R G   L   L  G   E+   ++  L
Sbjct: 247 VTLMEGRNREVRRLWESQGVQVSRLIRTRYGNISLMKSLPRGGWEEMDLTNVNYL 301

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>Y1459_HELPY (P55986) Hypothetical RNA pseudouridine synthase HP1459 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 262

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -3

Query: 593 KRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKA 414
           K  +L+++++EG+N E+R         V  L+RVR G   L + L +GKM  L   +   
Sbjct: 190 KYSKLRVIINEGKNRELRRFFAFFNAGVLDLRRVRYGFVNL-NALPVGKMRFLNRQEYNE 248

Query: 413 L 411
           L
Sbjct: 249 L 249

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>RSUA_PASMU (Q9CPN4) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 232

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADI 420
           + + + EGR H+V+ +    G KV  L R +IG+  L   L  G+   L   +I
Sbjct: 174 VNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGQIELDDRLAEGEYRSLSAEEI 227

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>RSUA_HAEIN (P45124) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 232

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADIKAL 411
           + + + EGR H+V+ +    G KV  L R +IG   L   L  G+   L +++I+ L
Sbjct: 174 VNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKL 230

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>Y544_RICPR (Q9ZD06) Hypothetical RNA pseudouridine synthase RP544 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 235

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = -3

Query: 653 IDGVKVVPDLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFR 474
           IDG+   P  ++ L  + +      ++V+ EG+N E+R + +  GL+V  L R++ G  +
Sbjct: 153 IDGIFYNPHSIKLL--RQNKSNSWFEVVLFEGKNREIRRIFEYFGLQVNKLIRIQYGALK 210

Query: 473 L 471
           +
Sbjct: 211 I 211

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>RLUB_BACSU (P35159) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 229

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 662 GTVIDGVKVVPDLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKR 495
           G  ++  K  P   + L      +   +++ +HEGRN +VR + +  G +V  LKR
Sbjct: 151 GIRLEEGKTAPAKAKLLSLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKR 206

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>RLUE_SALTY (Q8ZPZ1) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 221

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = -3

Query: 665 GGTVIDGVKVV--PDLV----EPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYA 504
           G T+  G+++V  PD +     P+  + +     LK+ ++EGRN +VR +  + G     
Sbjct: 134 GPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNRQVRRMTAHVGHPTLR 193

Query: 503 LKRVRIGRFRL 471
           L R  +G + L
Sbjct: 194 LIRYSMGDYTL 204

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>RLUE_ECO57 (Q8X724) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 217

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKE 429
           LKI ++EGRN +VR +  + G     L R  +G + L  +L  G+  E  E
Sbjct: 168 LKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREATE 217

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>Y129_BORBU (O51155) Hypothetical RNA pseudouridine synthase BB0129 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 249

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 19/77 (24%), Positives = 38/77 (49%)
 Frame = -3

Query: 647 GVKVVPDLVEPLDTQADTKRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLP 468
           G+KV  +  + L +     +   ++++ EG+N E+R++  +  + +  + R+RIG   L 
Sbjct: 161 GIKVKKEFFK-LKSYEILNKNSARLILDEGKNREIRKVFLSKNIFLKKIHRIRIGNINLD 219

Query: 467 SDLGIGKMVELKEADIK 417
           S         LKE  +K
Sbjct: 220 S---------LKEGQVK 227

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>YE59_HELPJ (Q9ZJG0) Hypothetical RNA pseudouridine synthase jhp_1352 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 262

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -3

Query: 593 KRMRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGK 447
           K  +L+++++EG+N E+R         V  L+RVR G   L + L +GK
Sbjct: 190 KYSKLRVIINEGKNRELRRFFAFFNAGVLDLRRVRYGFVNL-NALPVGK 237

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>RLUE_SHIFL (Q83LF6) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 217

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRL 471
           LKI ++EGRN +VR +  + G     L R  +G + L
Sbjct: 168 LKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204

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>RLUE_ECOLI (P75966) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 217

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRL 471
           LKI ++EGRN +VR +  + G     L R  +G + L
Sbjct: 168 LKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204

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>RLUE_ECOL6 (Q8FIB6) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 217

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRL 471
           LKI ++EGRN +VR +  + G     L R  +G + L
Sbjct: 168 LKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204

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>RLUE_YERPE (Q8ZFQ3) Ribosomal large subunit pseudouridine synthase E (EC|
           5.4.99.-) (rRNA-uridine isomerase E) (rRNA
           pseudouridylate synthase E)
          Length = 208

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 581 LKIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRL 471
           LKI ++EGRN +VR +  + G     L R  +G   L
Sbjct: 158 LKITLYEGRNRQVRRMTAHVGFPTLRLIRFSMGNLSL 194

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>YQ38_CAEEL (Q09459) Hypothetical protein C09G5.8|
          Length = 1531

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 239 VQQACLSFEEHGGCFAEEHGSVCWSFGICSARL 141
           ++  C+ FE    CF +EHG  C      +AR+
Sbjct: 114 IETICIDFEHFSHCFIQEHGKYCGYRSEITARM 146

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>POL_HTL1C (P14078) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 896

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 194 RSSPRVLRMKGMPVEPDRQAPISHL*WHNRRPFKRGVVMPYAGRGICYIHPPTPLSETEP 373
           R+ P+  R + +P +P+R   + HL    R+  + G + PY G G   + P    + T  
Sbjct: 19  RTPPKAPRNQPVPFKPERLQALQHL---VRKALEAGHIEPYTGPGNNPVFPVKKANGTWR 75

Query: 374 MNSDVHSTS 400
              D+ +T+
Sbjct: 76  FIHDLRATN 84

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>POL_HTL1A (P03362) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 896

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 194 RSSPRVLRMKGMPVEPDRQAPISHL*WHNRRPFKRGVVMPYAGRGICYIHPPTPLSETEP 373
           R+ P+  R + +P +P+R   + HL    R+  + G + PY G G   + P    + T  
Sbjct: 19  RTPPKAPRNQPVPFKPERLQALQHL---VRKALEAGHIEPYTGPGNNPVFPVKKANGTWR 75

Query: 374 MNSDVHSTS 400
              D+ +T+
Sbjct: 76  FIHDLRATN 84

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>RSUA_PSEAE (Q9I5J6) Ribosomal small subunit pseudouridine synthase A (EC|
           5.4.99.-) (16S pseudouridylate 516 synthase) (16S
           pseudouridine 516 synthase) (rRNA-uridine isomerase A)
           (rRNA pseudouridylate synthase A)
          Length = 230

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 578 KIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPSDLGIGKMVELKEADI 420
           ++ +HEGR H+V+ +  +   KV  L R R+G   L   L  G    L   +I
Sbjct: 175 RLTLHEGRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEI 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,107,600
Number of Sequences: 219361
Number of extensions: 1831591
Number of successful extensions: 4222
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 4098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4222
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result