ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 4e-14
3gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 88 4e-14
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
5gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare str... 88 4e-14
6gb|BT013987.1| Lycopersicon esculentum clone 133032R, mRNA sequence 64 6e-07
7ref|NM_129471.2| Arabidopsis thaliana RNA binding / pseudouridin... 48 0.038
8ref|NM_114202.1| Arabidopsis thaliana unknown protein AT3G43340 ... 48 0.038
9emb|BX842445.1|CNS0A8U5 Arabidopsis thaliana Full-length cDNA Co... 48 0.038
10gb|AY088622.1| Arabidopsis thaliana clone 853 mRNA, complete seq... 48 0.038
11dbj|AK117682.1| Arabidopsis thaliana At2g39140 mRNA for unknown ... 48 0.038
12gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 44 0.59
13gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 44 0.59
14gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, com... 44 0.59
15gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, comp... 44 0.59
16gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone m... 44 0.59
17gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 ma... 44 0.59
18gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 44 0.59
19gb|AC163452.12| Mus musculus chromosome 19, clone RP23-405C7, co... 42 2.3
20gb|AC141563.3| Mus musculus BAC clone RP23-410M22 from chromosom... 42 2.3
21gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosom... 42 2.3
22gb|AY222339.1| Simian T-lymphotropic virus 3 strain CTO-NG409, c... 42 2.3
23emb|AL121930.13|HS1046E21 Human DNA sequence from clone RP5-1046... 42 2.3
24gb|AY332722.1| Homo sapiens insulin-like growth factor 1 recepto... 42 2.3
25gb|AC118660.5| Homo sapiens chromosome 15, clone RP11-631H11, co... 42 2.3
26gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, co... 42 2.3
27emb|AL805935.6| Mouse DNA sequence from clone RP23-326E10 on chr... 42 2.3
28gb|AC154375.2| Mus musculus BAC clone RP23-69H21 from chromosome... 40 9.2
29gb|AC159294.2| Mus musculus BAC clone RP23-287I15 from chromosom... 40 9.2
30emb|AL590811.10| Human DNA sequence from clone RP11-208D8 on chr... 40 9.2
31emb|BX649288.14| Zebrafish DNA sequence from clone CH211-205B11 ... 40 9.2
32gb|AC055761.11| Homo sapiens 3 BAC RP11-73L6 (Roswell Park Cance... 40 9.2
33gb|AC175744.2| Mus musculus BAC clone RP24-163J18 from chromosom... 40 9.2
34gb|AC154831.2| Mus musculus BAC clone RP24-556A11 from chromosom... 40 9.2
35emb|BX004843.10| Zebrafish DNA sequence from clone CH211-165E15,... 40 9.2 
>dbj|AK067387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099O15, full
            insert sequence
          Length = 3247

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                        
Query: 511  acctttagtcctgcattctgcacaagttcacgaacttcatggtttcttccttcatgaacc 570
            |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1187 acctctaggcctgcattctgcacgagttcacgaacttcatgatttcttccttcatgaacc 1128

                                        
Query: 571  actattttaagtcgcatcctttttgtat 598
             ||||| |||  ||  ||||||||||||
Sbjct: 1127 gctattctaatccgggtcctttttgtat 1100



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 477  gaaccggcctatccgaacacgtttcaa 503
            ||||| |||||||||||||||||||||
Sbjct: 2033 gaacctgcctatccgaacacgtttcaa 2007
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                           
Query: 511     acctttagtcctgcattctgcacaagttcacgaacttcatggtttcttccttcatgaacc 570
               |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 2886230 acctctaggcctgcattctgcacgagttcacgaacttcatgatttcttccttcatgaacc 2886171



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 477     gaaccggcctatccgaacacgtttcaa 503
               ||||| |||||||||||||||||||||
Sbjct: 2887076 gaacctgcctatccgaacacgtttcaa 2887050
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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                         
Query: 511   acctttagtcctgcattctgcacaagttcacgaacttcatggtttcttccttcatgaacc 570
             |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 23717 acctctaggcctgcattctgcacgagttcacgaacttcatgatttcttccttcatgaacc 23658



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 477   gaaccggcctatccgaacacgtttcaa 503
             ||||| |||||||||||||||||||||
Sbjct: 24563 gaacctgcctatccgaacacgtttcaa 24537
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                           
Query: 511     acctttagtcctgcattctgcacaagttcacgaacttcatggtttcttccttcatgaacc 570
               |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 2886341 acctctaggcctgcattctgcacgagttcacgaacttcatgatttcttccttcatgaacc 2886282



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 477     gaaccggcctatccgaacacgtttcaa 503
               ||||| |||||||||||||||||||||
Sbjct: 2887187 gaacctgcctatccgaacacgtttcaa 2887161
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>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0038D20, from chromosome 3, complete sequence
          Length = 165395

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                          
Query: 511    acctttagtcctgcattctgcacaagttcacgaacttcatggtttcttccttcatgaacc 570
              |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 158186 acctctaggcctgcattctgcacgagttcacgaacttcatgatttcttccttcatgaacc 158127



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 477    gaaccggcctatccgaacacgtttcaa 503
              ||||| |||||||||||||||||||||
Sbjct: 159032 gaacctgcctatccgaacacgtttcaa 159006
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>gb|BT013987.1| Lycopersicon esculentum clone 133032R, mRNA sequence
          Length = 1667

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 517  agtcctgcattctgcacaagttcacgaacttcatggtttcttccttcatgaaccac 572
            ||||| ||||| | ||||||||||||||||||||| || | |||||||||||||||
Sbjct: 1184 agtccagcatttttcacaagttcacgaacttcatgattccgtccttcatgaaccac 1129
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>ref|NM_129471.2| Arabidopsis thaliana RNA binding / pseudouridine synthase/
            pseudouridylate synthase AT2G39140 mRNA, complete cds
          Length = 1495

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 544  acttcatggtttcttccttcatgaaccactat 575
            |||||||| ||||||||||| |||||||||||
Sbjct: 1140 acttcatgatttcttccttcgtgaaccactat 1109
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>ref|NM_114202.1| Arabidopsis thaliana unknown protein AT3G43340 mRNA, complete cds
          Length = 225

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 544 acttcatggtttcttccttcatgaaccactat 575
           |||||||| ||||||||||| |||||||||||
Sbjct: 134 acttcatgatttcttccttcgtgaaccactat 103
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>emb|BX842445.1|CNS0A8U5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB81ZD06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1404

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 544  acttcatggtttcttccttcatgaaccactat 575
            |||||||| ||||||||||| |||||||||||
Sbjct: 1092 acttcatgatttcttccttcgtgaaccactat 1061
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>gb|AY088622.1| Arabidopsis thaliana clone 853 mRNA, complete sequence
          Length = 1473

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 544  acttcatggtttcttccttcatgaaccactat 575
            |||||||| ||||||||||| |||||||||||
Sbjct: 1127 acttcatgatttcttccttcgtgaaccactat 1096
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>dbj|AK117682.1| Arabidopsis thaliana At2g39140 mRNA for unknown protein, complete
            cds, clone: RAFL17-34-K11
          Length = 1534

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 544  acttcatggtttcttccttcatgaaccactat 575
            |||||||| ||||||||||| |||||||||||
Sbjct: 1179 acttcatgatttcttccttcgtgaaccactat 1148
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 577     ttaagtcgcatcctttttgtat 598
               ||||||||||||||||||||||
Sbjct: 1679027 ttaagtcgcatcctttttgtat 1679048
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 577     ttaagtcgcatcctttttgtat 598
               ||||||||||||||||||||||
Sbjct: 1678972 ttaagtcgcatcctttttgtat 1678993
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>gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, complete sequence
          Length = 166581

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 351    caccgctgtcagaaacagagcc 372
              ||||||||||||||||||||||
Sbjct: 126132 caccgctgtcagaaacagagcc 126111
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>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence
          Length = 171080

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 351    caccgctgtcagaaacagagcc 372
              ||||||||||||||||||||||
Sbjct: 136267 caccgctgtcagaaacagagcc 136288
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>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete
             sequence
          Length = 126143

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 351   caccgctgtcagaaacagagcc 372
             ||||||||||||||||||||||
Sbjct: 25210 caccgctgtcagaaacagagcc 25189
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>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence
          Length = 117052

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 351   caccgctgtcagaaacagagcc 372
             ||||||||||||||||||||||
Sbjct: 57379 caccgctgtcagaaacagagcc 57400
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 577     ttaagtcgcatcctttttgtat 598
               ||||||||||||||||||||||
Sbjct: 1678904 ttaagtcgcatcctttttgtat 1678925
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>gb|AC163452.12| Mus musculus chromosome 19, clone RP23-405C7, complete sequence
          Length = 185406

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 549   atggtttcttccttcatgaac 569
             |||||||||||||||||||||
Sbjct: 64462 atggtttcttccttcatgaac 64442
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>gb|AC141563.3| Mus musculus BAC clone RP23-410M22 from chromosome 6, complete sequence
          Length = 186983

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 404   tgccatctagtgccttgatgtcagc 428
             |||||||| ||||||||||||||||
Sbjct: 54536 tgccatcttgtgccttgatgtcagc 54512
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>gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosome 19, complete
             sequence
          Length = 197365

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 549   atggtttcttccttcatgaac 569
             |||||||||||||||||||||
Sbjct: 12220 atggtttcttccttcatgaac 12200
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>gb|AY222339.1| Simian T-lymphotropic virus 3 strain CTO-NG409, complete genome
          Length = 8918

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 23   agttgcaaaactgttggaact 43
            |||||||||||||||||||||
Sbjct: 4594 agttgcaaaactgttggaact 4574
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>emb|AL121930.13|HS1046E21 Human DNA sequence from clone RP5-1046E21 on chromosome 6q14.1-14.3,
             complete sequence
          Length = 135434

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    agcatttacatttcacagata 92
             |||||||||||||||||||||
Sbjct: 65823 agcatttacatttcacagata 65843
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>gb|AY332722.1| Homo sapiens insulin-like growth factor 1 receptor (IGF1R) gene,
             complete cds
          Length = 309626

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   ttatattcatccgcccacacc 354
             |||||||||||||||||||||
Sbjct: 35248 ttatattcatccgcccacacc 35228
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>gb|AC118660.5| Homo sapiens chromosome 15, clone RP11-631H11, complete sequence
          Length = 167851

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    ttatattcatccgcccacacc 354
              |||||||||||||||||||||
Sbjct: 143856 ttatattcatccgcccacacc 143836
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>gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, complete sequence
          Length = 152451

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    tacactatcaacaactctgct 137
              |||||||||||||||||||||
Sbjct: 101806 tacactatcaacaactctgct 101786
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>emb|AL805935.6| Mouse DNA sequence from clone RP23-326E10 on chromosome X, complete
            sequence
          Length = 195918

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 543  aacttcatggtttcttccttc 563
            |||||||||||||||||||||
Sbjct: 9764 aacttcatggtttcttccttc 9784
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>gb|AC154375.2| Mus musculus BAC clone RP23-69H21 from chromosome 12, complete sequence
          Length = 169125

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     acatttcacagataaatcag 98
              ||||||||||||||||||||
Sbjct: 115330 acatttcacagataaatcag 115349
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>gb|AC159294.2| Mus musculus BAC clone RP23-287I15 from chromosome 12, complete sequence
          Length = 226841

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 135    gctagctagcctagctgaacatat 158
              ||||||||| ||||||||||||||
Sbjct: 214052 gctagctagactagctgaacatat 214029
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>emb|AL590811.10| Human DNA sequence from clone RP11-208D8 on chromosome 13, complete
             sequence
          Length = 38580

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    atttacatttcacagataaatcag 98
             |||| |||||||||||||||||||
Sbjct: 33724 attttcatttcacagataaatcag 33701
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>emb|BX649288.14| Zebrafish DNA sequence from clone CH211-205B11 in linkage group 3,
              complete sequence
          Length = 145373

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     aaaactgttggaactgtttg 48
              ||||||||||||||||||||
Sbjct: 120421 aaaactgttggaactgtttg 120402
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>gb|AC055761.11| Homo sapiens 3 BAC RP11-73L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 148114

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 573   tattttaagtcgcatcctttttgt 596
             ||||||||||| ||||||||||||
Sbjct: 51933 tattttaagtctcatcctttttgt 51956
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>gb|AC175744.2| Mus musculus BAC clone RP24-163J18 from chromosome y, complete sequence
          Length = 147935

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ctgtttggaccagttcatca 61
             ||||||||||||||||||||
Sbjct: 71993 ctgtttggaccagttcatca 72012
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>gb|AC154831.2| Mus musculus BAC clone RP24-556A11 from chromosome 12, complete
             sequence
          Length = 199712

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   gctagctagcctagctgaacatat 158
             ||||||||| ||||||||||||||
Sbjct: 21847 gctagctagactagctgaacatat 21824
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>emb|BX004843.10| Zebrafish DNA sequence from clone CH211-165E15, complete sequence
          Length = 131026

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    caaaactgttggaactgttt 47
             ||||||||||||||||||||
Sbjct: 32561 caaaactgttggaactgttt 32580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,219,744
Number of Sequences: 3902068
Number of extensions: 5219744
Number of successful extensions: 87421
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87199
Number of HSP's gapped (non-prelim): 222
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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