ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10p04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017066.1| Zea mays clone EL01N0358F01.c mRNA sequence 131 3e-27
2dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 8e-25
3gb|AY110364.1| Zea mays CL5344_1 mRNA sequence 117 5e-23
4emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 80 1e-11
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
6gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosom... 46 0.14
7gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, comple... 46 0.14
8gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 42 2.3
9emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chr... 42 2.3
10gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 8.9
11gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, co... 40 8.9
12gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 8.9
13gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 8.9
14gb|AC024579.5| Homo sapiens chromosome 5 clone CTD-2582M21, comp... 40 8.9
15gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 40 8.9
16gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 40 8.9
17gb|AC122733.11| Mus musculus chromosome 5, clone RP24-506B15, co... 40 8.9
18gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, com... 40 8.9
19emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chr... 40 8.9
20gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, co... 40 8.9
21emb|AL671880.15| Mouse DNA sequence from clone RP23-384C22 on ch... 40 8.9
22gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, com... 40 8.9 
>gb|BT017066.1| Zea mays clone EL01N0358F01.c mRNA sequence
          Length = 876

 Score =  131 bits (66), Expect = 3e-27
 Identities = 211/258 (81%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                       
Query: 398 ggtgttcatgaggcgcctgctgcgatttctggtgccttttcttgagcctcgtccttgctc 457
           |||| |||||| |||||| | || ||||||||||  || ||||| ||||| ||||||| |
Sbjct: 548 ggtgatcatgacgcgcctaccgccatttctggtggtttctcttgtgcctcatccttgccc 489

                                                                       
Query: 458 agcaatgctggtgtgaccgagacgacgccgatcaagaacagcagagctactgactgggtg 517
           ||||||||||||||||| || || || ||||||| ||| ||||| ||||  |||||||||
Sbjct: 488 agcaatgctggtgtgactgaaacaacaccgatcaggaatagcagtgctatcgactgggtg 429

                                                                       
Query: 518 tcgtacaggtcgctgagcgatgtcagctctcccagagcaatgccagccctcacgggtcac 577
           ||||| ||||| || ||||| || | |||||| |||||||| |||||||| ||  |||||
Sbjct: 428 tcgtaaaggtcactcagcgaagttaactctccaagagcaattccagccctgac-agtcac 370

                                                                       
Query: 578 gtaggctgctgggatgagaccgataagagttgccaataagaaggtatggaagggcacatc 637
            || || |||||||| ||||| || |||||| ||| ||||||  ||||| |||| |||||
Sbjct: 369 ataagcagctgggataagaccaatgagagttcccagtaagaatatatggtaggggacatc 310

                             
Query: 638 aacaatgggagatgctaa 655
            || ||||| || |||||
Sbjct: 309 tactatgggtgaagctaa 292
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>dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077L10, full
           insert sequence
          Length = 1310

 Score =  123 bits (62), Expect = 8e-25
 Identities = 183/222 (82%), Gaps = 1/222 (0%)
 Strand = Plus / Minus

                                                                       
Query: 434 ttttcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaag 493
           |||||||| || |||||||||| || ||||| |||||||||||| || |  |||||||||
Sbjct: 892 ttttcttgcgcttcgtccttgcccaacaatgttggtgtgaccgaaacaatcccgatcaag 833

                                                                       
Query: 494 aacagcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccaga 553
           |||||||| ||||  || ||||| || |||||||| || |  ||||| | |||||| |||
Sbjct: 832 aacagcagcgctatcgattgggtatcatacaggtcactcaatgatgttaactctcctaga 773

                                                                       
Query: 554 gcaatgccagccctcacgggtcacgtaggctgctgggatgagaccgataagagttgccaa 613
           ||||| |||||||| ||  || || ||||  ||||||||||||||||| |||||||||| 
Sbjct: 772 gcaatcccagccctgac-agtaacataggaagctgggatgagaccgatgagagttgccag 714

                                                     
Query: 614 taagaaggtatggaagggcacatcaacaatgggagatgctaa 655
           ||||||  ||||| |||||||||| || ||||| || |||||
Sbjct: 713 taagaatatatggtagggcacatctactatgggtgaagctaa 672



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 1    tggattgaatgaatctggtcatatatatacaaggat 36
            ||||||||||||||||| ||| ||||||||| ||||
Sbjct: 1293 tggattgaatgaatctgatca-atatatacagggat 1259
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>gb|AY110364.1| Zea mays CL5344_1 mRNA sequence
          Length = 1292

 Score =  117 bits (59), Expect = 5e-23
 Identities = 180/219 (82%), Gaps = 1/219 (0%)
 Strand = Plus / Minus

                                                                       
Query: 437 tcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaagaac 496
           ||||| ||||| ||||||| |||||||||||||||||| || || || ||||||| ||| 
Sbjct: 887 tcttgtgcctcatccttgcccagcaatgctggtgtgactgaaacaacaccgatcaggaat 828

                                                                       
Query: 497 agcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccagagca 556
           ||||| ||||  |||||||||||||| ||||| || ||||| || | |||||| ||||||
Sbjct: 827 agcagtgctatcgactgggtgtcgtaaaggtcactcagcgaagttaactctccaagagca 768

                                                                       
Query: 557 atgccagccctcacgggtcacgtaggctgctgggatgagaccgataagagttgccaataa 616
           || |||||||| ||  ||||| || || |||||||| ||||| || |||||| ||| |||
Sbjct: 767 attccagccctgac-agtcacataagcagctgggataagaccaatgagagttcccagtaa 709

                                                  
Query: 617 gaaggtatggaagggcacatcaacaatgggagatgctaa 655
           |||  ||||| |||| ||||| || ||||| || |||||
Sbjct: 708 gaatatatggtaggggacatctactatgggtgaagctaa 670



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                 
Query: 1    tggattgaatgaatctggtcatatatatacaaggatt 37
            ||||||||||||||||||| | ||||||||| |||||
Sbjct: 1280 tggattgaatgaatctggtta-atatatacagggatt 1245
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>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 109/132 (82%)
 Strand = Plus / Plus

                                                                         
Query: 434   ttttcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaag 493
             |||||||| || |||||||||| || ||||| |||||||||||| || |  |||||||||
Sbjct: 85617 ttttcttgcgcttcgtccttgcccaacaatgttggtgtgaccgaaacaatcccgatcaag 85676

                                                                         
Query: 494   aacagcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccaga 553
             |||||||| ||||  || ||||| || |||||||| || |  ||||| | |||||| |||
Sbjct: 85677 aacagcagcgctatcgattgggtatcatacaggtcactcaatgatgttaactctcctaga 85736

                         
Query: 554   gcaatgccagcc 565
             ||||| ||||||
Sbjct: 85737 gcaatcccagcc 85748



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                         
Query: 585   gctgggatgagaccgataagagttgccaataagaaggtatggaagggcacatcaacaatg 644
             ||||||||||||||||| |||||||||| ||||||  ||||| |||||||||| || |||
Sbjct: 85854 gctgggatgagaccgatgagagttgccagtaagaatatatggtagggcacatctactatg 85913

                        
Query: 645   ggagatgctaa 655
             || || |||||
Sbjct: 85914 ggtgaagctaa 85924



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                 
Query: 1     tggattgaatgaatctggtcatatatatacaaggat 36
             ||||||||||||||||| ||| ||||||||| ||||
Sbjct: 85216 tggattgaatgaatctgatca-atatatacagggat 85250
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 109/132 (82%)
 Strand = Plus / Plus

                                                                            
Query: 434      ttttcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaag 493
                |||||||| || |||||||||| || ||||| |||||||||||| || |  |||||||||
Sbjct: 29948865 ttttcttgcgcttcgtccttgcccaacaatgttggtgtgaccgaaacaatcccgatcaag 29948924

                                                                            
Query: 494      aacagcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccaga 553
                |||||||| ||||  || ||||| || |||||||| || |  ||||| | |||||| |||
Sbjct: 29948925 aacagcagcgctatcgattgggtatcatacaggtcactcaatgatgttaactctcctaga 29948984

                            
Query: 554      gcaatgccagcc 565
                ||||| ||||||
Sbjct: 29948985 gcaatcccagcc 29948996



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                            
Query: 585      gctgggatgagaccgataagagttgccaataagaaggtatggaagggcacatcaacaatg 644
                ||||||||||||||||| |||||||||| ||||||  ||||| |||||||||| || |||
Sbjct: 29949102 gctgggatgagaccgatgagagttgccagtaagaatatatggtagggcacatctactatg 29949161

                           
Query: 645      ggagatgctaa 655
                || || |||||
Sbjct: 29949162 ggtgaagctaa 29949172



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 1        tggattgaatgaatctggtcatatatatacaaggat 36
                ||||||||||||||||| ||| ||||||||| ||||
Sbjct: 29948464 tggattgaatgaatctgatca-atatatacagggat 29948498
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>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 133    gatgggcattgtgcttcccagat 155
              |||||||||||||||||||||||
Sbjct: 160404 gatgggcattgtgcttcccagat 160426
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>gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, complete sequence
          Length = 162078

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 133   gatgggcattgtgcttcccagat 155
             |||||||||||||||||||||||
Sbjct: 53631 gatgggcattgtgcttcccagat 53653
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 331    cccaaatccaatgaagccgccgcat 355
              ||||||||| |||||||||||||||
Sbjct: 847795 cccaaatccgatgaagccgccgcat 847819
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>emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chromosome 13 Contains the
             5' end of a novel gene, complete sequence
          Length = 165257

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   aaaccatgtgtcatccgcctc 316
             |||||||||||||||||||||
Sbjct: 41431 aaaccatgtgtcatccgcctc 41451
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    ccgagacgacgccgatcaag 493
              ||||||||||||||||||||
Sbjct: 349223 ccgagacgacgccgatcaag 349204
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>gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, complete sequence
          Length = 207496

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    atttctggtgccttttcttg 441
              ||||||||||||||||||||
Sbjct: 100603 atttctggtgccttttcttg 100622
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 385    gtggctcctcttcggtgttcatga 408
              |||||| |||||||||||||||||
Sbjct: 750582 gtggctgctcttcggtgttcatga 750605
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 223     tccggcaggcgggtgatggg 242
               ||||||||||||||||||||
Sbjct: 1906763 tccggcaggcgggtgatggg 1906744
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>gb|AC024579.5| Homo sapiens chromosome 5 clone CTD-2582M21, complete sequence
          Length = 149870

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 611    caataagaaggtatggaagg 630
              ||||||||||||||||||||
Sbjct: 147818 caataagaaggtatggaagg 147837
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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 611   caataagaaggtatggaagg 630
             ||||||||||||||||||||
Sbjct: 99607 caataagaaggtatggaagg 99588
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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   caataagaaggtatggaagg 630
             ||||||||||||||||||||
Sbjct: 35478 caataagaaggtatggaagg 35497
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>gb|AC122733.11| Mus musculus chromosome 5, clone RP24-506B15, complete sequence
          Length = 157625

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   catatatatacaaggatttt 39
            ||||||||||||||||||||
Sbjct: 3052 catatatatacaaggatttt 3071
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>gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, complete sequence
          Length = 220813

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     catatatatacaaggatttt 39
              ||||||||||||||||||||
Sbjct: 114148 catatatatacaaggatttt 114129
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>emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chromosome 4, complete
              sequence
          Length = 241148

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    atgggcattgtgcttcccag 153
              ||||||||||||||||||||
Sbjct: 140568 atgggcattgtgcttcccag 140587
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>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence
          Length = 231400

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 172    atgtggggggtgaccatgaaatgaaacagtgt 203
              ||||| |||| |||| ||||||||||||||||
Sbjct: 223436 atgtgtggggagaccttgaaatgaaacagtgt 223467
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>emb|AL671880.15| Mouse DNA sequence from clone RP23-384C22 on chromosome X, complete
            sequence
          Length = 200535

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   catatatatacaaggatttt 39
            ||||||||||||||||||||
Sbjct: 9727 catatatatacaaggatttt 9746
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>gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, complete sequence
          Length = 150336

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 172   atgtggggggtgaccatgaaatgaaacagtgt 203
             ||||| |||| |||| ||||||||||||||||
Sbjct: 45227 atgtgtggggagaccttgaaatgaaacagtgt 45196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,092,423
Number of Sequences: 3902068
Number of extensions: 5092423
Number of successful extensions: 79740
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79574
Number of HSP's gapped (non-prelim): 165
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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