| Clone Name | rbags11e08 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 | 95 | 4e-20 | 2 | SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF | 44 | 3e-04 | 3 | YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II | 32 | 1.7 | 4 | TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichloroph... | 32 | 2.3 | 5 | DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13) | 30 | 8.6 |
|---|
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 94.7 bits (234), Expect(2) = 4e-20 Identities = 44/80 (55%), Positives = 59/80 (73%) Frame = -1 Query: 602 DLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGEQPREGFLLLSNLVEDQM 423 DLS++ +E +N S+ M + + LRE D S + + +VRQGEQPREGFLLL NL+EDQM Sbjct: 959 DLSRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQM 1018 Query: 422 AGTSSYMDWILQIHRQTQSS 363 G+S Y+DWILQ+HRQ Q + Sbjct: 1019 GGSSGYVDWILQLHRQVQQN 1038 Score = 23.1 bits (48), Expect(2) = 4e-20 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = -3 Query: 666 GRMLQPELMNDILGVSLS 613 GRML P++ ++LGV + Sbjct: 940 GRMLSPDIAKNLLGVDFA 957
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/76 (32%), Positives = 47/76 (61%) Frame = -1 Query: 596 SKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGEQPREGFLLLSNLVEDQMAG 417 S+ L++ DN S+ F V +R + SS ++ ++ ++G+ P L S +VED+ +G Sbjct: 1020 SQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRI-KLCKKGD-PAGNMLFQSYMVEDRGSG 1077 Query: 416 TSSYMDWILQIHRQTQ 369 +SY+D+++ +HRQ Q Sbjct: 1078 GASYVDFLVSVHRQIQ 1093
>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II| Length = 891 Score = 32.0 bits (71), Expect = 1.7 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = -1 Query: 599 LSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGEQPREGFLLLSNLVEDQMA 420 L ++L D S + +LR + S P++VRQG EG + S LVED Sbjct: 811 LKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIF-STLVEDNTR 869 Query: 419 GTSSYMDWILQIH 381 Y+D++ +IH Sbjct: 870 EGFGYLDFLTKIH 882
>TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate| dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase) Length = 297 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -1 Query: 311 ADSAAVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 171 A++ A +V G L H + QP + Y++L A L PS G+T F Sbjct: 97 AEADAREVVGNFANQLWHSDSSFQQPAARYSMLSAIVLPPSGGDTEF 143
>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)| Length = 302 Score = 29.6 bits (65), Expect = 8.6 Identities = 28/91 (30%), Positives = 31/91 (34%) Frame = +2 Query: 260 G*EGDQGDRGLAQQPNLQRFTQKQKFLEHPRYIITSSVFGGESGVSNPCNCWFQPSGPRR 439 G GDQGD+G A QP S GE G P +P P Sbjct: 160 GLPGDQGDKGEAGQPGQP----------------GSDAAPGEQGPKGPNGAPGKPGAPGA 203 Query: 440 GWTEARSPLLAAHLAVQHGAAGNTKNPSPSG 532 E L A VQ G G+T P P G Sbjct: 204 PGDEG---LPAVCEPVQKGEPGSTGEPGPVG 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,238,088 Number of Sequences: 219361 Number of extensions: 2277746 Number of successful extensions: 6234 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5955 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6232 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)