ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 95 4e-20
2SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF 44 3e-04
3YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II 32 1.7
4TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichloroph... 32 2.3
5DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13) 30 8.6

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 94.7 bits (234), Expect(2) = 4e-20
 Identities = 44/80 (55%), Positives = 59/80 (73%)
 Frame = -1

Query: 602  DLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGEQPREGFLLLSNLVEDQM 423
            DLS++  +E +N  S+  M + + LRE D S + +  +VRQGEQPREGFLLL NL+EDQM
Sbjct: 959  DLSRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQM 1018

Query: 422  AGTSSYMDWILQIHRQTQSS 363
             G+S Y+DWILQ+HRQ Q +
Sbjct: 1019 GGSSGYVDWILQLHRQVQQN 1038



 Score = 23.1 bits (48), Expect(2) = 4e-20
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 666 GRMLQPELMNDILGVSLS 613
           GRML P++  ++LGV  +
Sbjct: 940 GRMLSPDIAKNLLGVDFA 957



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>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 47/76 (61%)
 Frame = -1

Query: 596  SKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGEQPREGFLLLSNLVEDQMAG 417
            S+  L++ DN  S+ F  V   +R + SS  ++ ++ ++G+ P    L  S +VED+ +G
Sbjct: 1020 SQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRI-KLCKKGD-PAGNMLFQSYMVEDRGSG 1077

Query: 416  TSSYMDWILQIHRQTQ 369
             +SY+D+++ +HRQ Q
Sbjct: 1078 GASYVDFLVSVHRQIQ 1093



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>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II|
          Length = 891

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -1

Query: 599  LSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGEQPREGFLLLSNLVEDQMA 420
            L  ++L   D   S     +  +LR +  S    P++VRQG    EG +  S LVED   
Sbjct: 811  LKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIF-STLVEDNTR 869

Query: 419  GTSSYMDWILQIH 381
                Y+D++ +IH
Sbjct: 870  EGFGYLDFLTKIH 882



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>TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate|
           dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase)
          Length = 297

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 311 ADSAAVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 171
           A++ A +V G     L H +    QP + Y++L A  L PS G+T F
Sbjct: 97  AEADAREVVGNFANQLWHSDSSFQQPAARYSMLSAIVLPPSGGDTEF 143



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>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 28/91 (30%), Positives = 31/91 (34%)
 Frame = +2

Query: 260 G*EGDQGDRGLAQQPNLQRFTQKQKFLEHPRYIITSSVFGGESGVSNPCNCWFQPSGPRR 439
           G  GDQGD+G A QP                    S    GE G   P     +P  P  
Sbjct: 160 GLPGDQGDKGEAGQPGQP----------------GSDAAPGEQGPKGPNGAPGKPGAPGA 203

Query: 440 GWTEARSPLLAAHLAVQHGAAGNTKNPSPSG 532
              E    L A    VQ G  G+T  P P G
Sbjct: 204 PGDEG---LPAVCEPVQKGEPGSTGEPGPVG 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,238,088
Number of Sequences: 219361
Number of extensions: 2277746
Number of successful extensions: 6234
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6232
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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