ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471148.1| Oryza sativa (japonica cultivar-group), predic... 174 2e-40
2dbj|AK120404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
3dbj|AK071693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
4gb|BT016797.1| Zea mays clone Contig630 mRNA sequence 119 1e-23
5gb|AY104615.1| Zea mays PCO111783 mRNA sequence 119 1e-23
6emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4,... 113 8e-22
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
8dbj|AK071986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 7e-10
9gb|AC127245.5| Mus musculus BAC clone RP24-422M4 from chromosome... 44 0.58
10gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete se... 44 0.58
11gb|AC132394.3| Mus musculus BAC clone RP23-391F16 from chromosom... 44 0.58
12gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 42 2.3
13gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 42 2.3
14gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 42 2.3
15gb|AC104686.2| Homo sapiens BAC clone RP11-74M11 from 4, complet... 42 2.3
16gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-4... 42 2.3
17gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 42 2.3
18emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on ch... 42 2.3
19emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2... 42 2.3
20emb|AL805971.6| Mouse DNA sequence from clone RP23-143H1 on chro... 42 2.3
21gb|AF024495.2| Caenorhabditis elegans cosmid R02D1, complete seq... 40 9.1
22gb|AC132323.3| Mus musculus BAC clone RP24-268M17 from chromosom... 40 9.1
23gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, co... 40 9.1
24gb|AC163654.2| Mus musculus BAC clone RP23-259M14 from chromosom... 40 9.1
25gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell P... 40 9.1
26gb|AC108081.2| Homo sapiens chromosome 16 clone CTC-661I16, comp... 40 9.1
27gb|AC093844.3| Homo sapiens BAC clone RP11-451F20 from 4, comple... 40 9.1
28gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complet... 40 9.1
29emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19,... 40 9.1
30emb|CR391759.1| Gallus gallus finished cDNA, clone ChEST469n6 40 9.1
31gb|AF125951.1| Caenorhabditis elegans cosmid D2063, complete seq... 40 9.1
32ref|NM_071793.4| Caenorhabditis elegans Nuclear Hormone Receptor... 40 9.1
33emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in... 40 9.1
34gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complet... 40 9.1
35gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromos... 40 9.1
36emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, co... 40 9.1
37emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 ... 40 9.1
38gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, c... 40 9.1
39gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 9.1
40gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 ... 40 9.1
41emb|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-8... 40 9.1
42emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in... 40 9.1
43emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 ... 40 9.1
44gb|AE016830.1| Enterococcus faecalis V583, complete genome 40 9.1
45gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complet... 40 9.1 
>ref|XM_471148.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3084

 Score =  174 bits (88), Expect = 2e-40
 Identities = 251/304 (82%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                        
Query: 365  agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 424
            ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 3082 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 3023

                                                                        
Query: 425  tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 484
            |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 3022 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 2963

                                                                        
Query: 485  gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 544
            |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 2962 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 2903

                                                                        
Query: 545  ccatgaagtttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcag 604
             |||||| ||||| ||||  | ||| |||||||||||||| |||| |||||||||||| |
Sbjct: 2902 tcatgaaatttctggagtactcgttatcacattctctcaattgaacctttgatagatc-g 2844

                                                                        
Query: 605  gggaagtttgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattcta 664
            |||||||||| || ||||||||||||||||| |||||  || |||||  ||||||| |||
Sbjct: 2843 gggaagtttgccaagctgactccaagaatgttgttcacaagttcaggtgggagcatccta 2784

                
Query: 665  ccta 668
            ||||
Sbjct: 2783 ccta 2780
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>dbj|AK120404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088L21, full
            insert sequence
          Length = 3678

 Score =  174 bits (88), Expect = 2e-40
 Identities = 251/304 (82%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                        
Query: 365  agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 424
            ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 3208 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 3149

                                                                        
Query: 425  tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 484
            |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 3148 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 3089

                                                                        
Query: 485  gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 544
            |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 3088 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 3029

                                                                        
Query: 545  ccatgaagtttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcag 604
             |||||| ||||| ||||  | ||| |||||||||||||| |||| |||||||||||| |
Sbjct: 3028 tcatgaaatttctggagtactcgttatcacattctctcaattgaacctttgatagatc-g 2970

                                                                        
Query: 605  gggaagtttgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattcta 664
            |||||||||| || ||||||||||||||||| |||||  || |||||  ||||||| |||
Sbjct: 2969 gggaagtttgccaagctgactccaagaatgttgttcacaagttcaggtgggagcatccta 2910

                
Query: 665  ccta 668
            ||||
Sbjct: 2909 ccta 2906
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>dbj|AK071693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108J23, full
            insert sequence
          Length = 1804

 Score =  174 bits (88), Expect = 2e-40
 Identities = 251/304 (82%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                        
Query: 365  agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 424
            ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 1341 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 1282

                                                                        
Query: 425  tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 484
            |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 1281 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 1222

                                                                        
Query: 485  gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 544
            |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 1221 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 1162

                                                                        
Query: 545  ccatgaagtttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcag 604
             |||||| ||||| ||||  | ||| |||||||||||||| |||| |||||||||||| |
Sbjct: 1161 tcatgaaatttctggagtactcgttatcacattctctcaattgaacctttgatagatc-g 1103

                                                                        
Query: 605  gggaagtttgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattcta 664
            |||||||||| || ||||||||||||||||| |||||  || |||||  ||||||| |||
Sbjct: 1102 gggaagtttgccaagctgactccaagaatgttgttcacaagttcaggtgggagcatccta 1043

                
Query: 665  ccta 668
            ||||
Sbjct: 1042 ccta 1039
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>gb|BT016797.1| Zea mays clone Contig630 mRNA sequence
          Length = 1829

 Score =  119 bits (60), Expect = 1e-23
 Identities = 238/296 (80%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                        
Query: 373  gtttggcggtgaatctggagtatccaatccatgtaactgctggttccagccatctggtcc 432
            ||||| |||||||| ||  |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 1328 gtttgacggtgaatttgctgtatccaatcaacgtaactacttgttccagccatctggtcc 1269

                                                                        
Query: 433  tcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgccgtacaaca 492
            || || ||||| || |||||||   |||| ||||||||||| ||||| || || || |||
Sbjct: 1268 tcaacaaggttagatagaagcagatagccttctcttggctgttcaccctgtcgcaccaca 1209

                                                                        
Query: 493  cggggcagctggtaacacgaagaatccctctccctcagggctctttgtactgccatgaag 552
            |||   ||||||| | | |||| |||| |||||| ||||| |||| ||| |  |||||| 
Sbjct: 1208 cggcatagctggtgataggaaggatccttctcccgcagggatcttagtattttcatgaaa 1149

                                                                        
Query: 553  tttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcaggggaagtt 612
            ||||| ||    |  |||||||| ||||||||   |||||||||||| ||| ||||||||
Sbjct: 1148 tttcttgacaattcattgtcacactctctcaatacaatctttgataggtca-gggaagtt 1090

                                                                    
Query: 613  tgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattctaccta 668
            || || ||| ||||||||||||| |||||  || |||||| ||||||| |||||||
Sbjct: 1089 tgccaagctcactccaagaatgttgttcacaagttcaggcgggagcatcctaccta 1034
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>gb|AY104615.1| Zea mays PCO111783 mRNA sequence
          Length = 2510

 Score =  119 bits (60), Expect = 1e-23
 Identities = 238/296 (80%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                        
Query: 373  gtttggcggtgaatctggagtatccaatccatgtaactgctggttccagccatctggtcc 432
            ||||| |||||||| ||  |||||||||| | |||||| || ||||||||||||||||||
Sbjct: 2064 gtttgacggtgaatttgctgtatccaatcaacgtaactacttgttccagccatctggtcc 2005

                                                                        
Query: 433  tcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgccgtacaaca 492
            || || ||||| || |||||||   |||| ||||||||||| ||||| || || || |||
Sbjct: 2004 tcaacaaggttagatagaagcagatagccttctcttggctgttcaccctgtcgcaccaca 1945

                                                                        
Query: 493  cggggcagctggtaacacgaagaatccctctccctcagggctctttgtactgccatgaag 552
            |||   ||||||| | | |||| |||| |||||| ||||| |||| ||| |  |||||| 
Sbjct: 1944 cggcatagctggtgataggaaggatccttctcccgcagggatcttagtattttcatgaaa 1885

                                                                        
Query: 553  tttctcgagtgattgttgtcacattctctcaactgaatctttgatagatcaggggaagtt 612
            ||||| ||    |  |||||||| ||||||||   |||||||||||| ||| ||||||||
Sbjct: 1884 tttcttgacaattcattgtcacactctctcaatacaatctttgataggtca-gggaagtt 1826

                                                                    
Query: 613  tgacaggctgactccaagaatgtcgttcatgagctcaggctggagcattctaccta 668
            || || ||| ||||||||||||| |||||  || |||||| ||||||| |||||||
Sbjct: 1825 tgccaagctcactccaagaatgttgttcacaagttcaggcgggagcatcctaccta 1770



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 92   tgcctacttattctgaaacaacagctgt 119
            ||||||||||||| || |||||||||||
Sbjct: 2330 tgcctacttattccgatacaacagctgt 2303
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>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09,
              complete sequence
          Length = 155672

 Score =  113 bits (57), Expect = 8e-22
 Identities = 183/225 (81%)
 Strand = Plus / Minus

                                                                          
Query: 365    agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 424
              ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 147165 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 147106

                                                                          
Query: 425    tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 484
              |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 147105 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 147046

                                                                          
Query: 485    gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 544
              |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 147045 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 146986

                                                           
Query: 545    ccatgaagtttctcgagtgattgttgtcacattctctcaactgaa 589
               |||||| ||||| ||||  | ||| |||||||||||||| ||||
Sbjct: 146985 tcatgaaatttctggagtactcgttatcacattctctcaattgaa 146941



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 68/78 (87%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                          
Query: 591    ctttgatagatcaggggaagtttgacaggctgactccaagaatgtcgttcatgagctcag 650
              |||||||||||| ||||||||||| || ||||||||||||||||| |||||  || ||||
Sbjct: 146727 ctttgatagatc-ggggaagtttgccaagctgactccaagaatgttgttcacaagttcag 146669

                                
Query: 651    gctggagcattctaccta 668
              |  ||||||| |||||||
Sbjct: 146668 gtgggagcatcctaccta 146651
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 8e-22
 Identities = 183/225 (81%)
 Strand = Plus / Minus

                                                                           
Query: 365     agctctgtgtttggcggtgaatctggagtatccaatccatgtaactgctggttccagcca 424
               ||||||| ||||||||||| || ||||||||||| |||||||||||||| || |||| ||
Sbjct: 1851897 agctctgcgtttggcggtggatttggagtatccagtccatgtaactgctagtcccagaca 1851838

                                                                           
Query: 425     tctggtcctcgacgaggttggacagaagcaagaagccctctcttggctgctcaccttgcc 484
               |||| |||||||| | ||| || |||||||| ||||| ||||||||||| ||||| || |
Sbjct: 1851837 tctgatcctcgaccaagttagatagaagcaaaaagccttctcttggctgttcaccctgac 1851778

                                                                           
Query: 485     gtacaacacggggcagctggtaacacgaagaatccctctccctcagggctctttgtactg 544
               |||| || |||   |||||||   | |||| |||||||||||| ||||  | | ||| | 
Sbjct: 1851777 gtacgacgcggcagagctggtggtaagaaggatccctctcccttagggtccctagtattt 1851718

                                                            
Query: 545     ccatgaagtttctcgagtgattgttgtcacattctctcaactgaa 589
                |||||| ||||| ||||  | ||| |||||||||||||| ||||
Sbjct: 1851717 tcatgaaatttctggagtactcgttatcacattctctcaattgaa 1851673



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 68/78 (87%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                           
Query: 591     ctttgatagatcaggggaagtttgacaggctgactccaagaatgtcgttcatgagctcag 650
               |||||||||||| ||||||||||| || ||||||||||||||||| |||||  || ||||
Sbjct: 1851459 ctttgatagatc-ggggaagtttgccaagctgactccaagaatgttgttcacaagttcag 1851401

                                 
Query: 651     gctggagcattctaccta 668
               |  ||||||| |||||||
Sbjct: 1851400 gtgggagcatcctaccta 1851383
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>dbj|AK071986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094J05, full
            insert sequence
          Length = 2007

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 77/89 (86%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 580  ctcaactgaatctttgatagatcaggggaagtttgacaggctgactccaagaatgtcgtt 639
            ||||| |||| |||||||||||| ||||||||||| || ||||||||||||||||| |||
Sbjct: 2007 ctcaattgaacctttgatagatc-ggggaagtttgccaagctgactccaagaatgttgtt 1949

                                         
Query: 640  catgagctcaggctggagcattctaccta 668
            ||  || |||||  ||||||| |||||||
Sbjct: 1948 cacaagttcaggtgggagcatcctaccta 1920
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>gb|AC127245.5| Mus musculus BAC clone RP24-422M4 from chromosome 6, complete sequence
          Length = 181475

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 572    cacattctctcaactgaatctttgat 597
              |||||||| |||||||||||||||||
Sbjct: 173797 cacattctgtcaactgaatctttgat 173822
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>gb|AC144459.8| Medicago truncatula clone mth2-23o13, complete sequence
          Length = 114098

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 157   aatatattaacaataaagtttg 178
             ||||||||||||||||||||||
Sbjct: 93512 aatatattaacaataaagtttg 93491
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>gb|AC132394.3| Mus musculus BAC clone RP23-391F16 from chromosome 6, complete sequence
          Length = 197171

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 572   cacattctctcaactgaatctttgat 597
             |||||||| |||||||||||||||||
Sbjct: 32272 cacattctgtcaactgaatctttgat 32297
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 316     gtttacacaaaaacaaaaatt 336
               |||||||||||||||||||||
Sbjct: 2398457 gtttacacaaaaacaaaaatt 2398437
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 316     gtttacacaaaaacaaaaatt 336
               |||||||||||||||||||||
Sbjct: 2350274 gtttacacaaaaacaaaaatt 2350254
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 316     gtttacacaaaaacaaaaatt 336
               |||||||||||||||||||||
Sbjct: 2350203 gtttacacaaaaacaaaaatt 2350183
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>gb|AC104686.2| Homo sapiens BAC clone RP11-74M11 from 4, complete sequence
          Length = 149964

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   acaaaaacaaaaatttctgga 342
             |||||||||||||||||||||
Sbjct: 39981 acaaaaacaaaaatttctgga 40001
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>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete
             sequence
          Length = 146321

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 323   caaaaacaaaaatttctggaa 343
             |||||||||||||||||||||
Sbjct: 24817 caaaaacaaaaatttctggaa 24837
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 316     gtttacacaaaaacaaaaatt 336
               |||||||||||||||||||||
Sbjct: 2350150 gtttacacaaaaacaaaaatt 2350130
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>emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on chromosome X, complete
              sequence
          Length = 178341

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 610    gtttgacaggctgactccaag 630
              |||||||||||||||||||||
Sbjct: 162560 gtttgacaggctgactccaag 162580
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>emb|AL121840.4|CNS01DSR Human chromosome 14 DNA sequence BAC C-2251F13 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 93432

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   tattaacaataaagtttgtat 181
             |||||||||||||||||||||
Sbjct: 61915 tattaacaataaagtttgtat 61895
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>emb|AL805971.6| Mouse DNA sequence from clone RP23-143H1 on chromosome X, complete
              sequence
          Length = 107283

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    aaagtttgtattgcccgctga 191
              |||||||||||||||||||||
Sbjct: 103457 aaagtttgtattgcccgctga 103437
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>gb|AF024495.2| Caenorhabditis elegans cosmid R02D1, complete sequence
          Length = 5027

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  caaaaatttctggaacatcc 348
            ||||||||||||||||||||
Sbjct: 4777 caaaaatttctggaacatcc 4796
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>gb|AC132323.3| Mus musculus BAC clone RP24-268M17 from chromosome 9, complete sequence
          Length = 182469

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    atattaacaataaagtttgt 179
              ||||||||||||||||||||
Sbjct: 176578 atattaacaataaagtttgt 176597
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>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence
          Length = 211576

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   gtttacacaaaaacaaaaat 335
             ||||||||||||||||||||
Sbjct: 95687 gtttacacaaaaacaaaaat 95706
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>gb|AC163654.2| Mus musculus BAC clone RP23-259M14 from chromosome 16, complete
             sequence
          Length = 159273

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    tgcatacaaacccctaccaaaaac 60
             ||||||||||| ||||||||||||
Sbjct: 32179 tgcatacaaactcctaccaaaaac 32156
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>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165052

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    acaaaaacaaaaatttctgg 341
              ||||||||||||||||||||
Sbjct: 117029 acaaaaacaaaaatttctgg 117048
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>gb|AC108081.2| Homo sapiens chromosome 16 clone CTC-661I16, complete sequence
          Length = 100808

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   tctggtcctcgacgaggttg 444
             ||||||||||||||||||||
Sbjct: 23452 tctggtcctcgacgaggttg 23433
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>gb|AC093844.3| Homo sapiens BAC clone RP11-451F20 from 4, complete sequence
          Length = 196044

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   ttacacaaaaacaaaaattt 337
             ||||||||||||||||||||
Sbjct: 58574 ttacacaaaaacaaaaattt 58555
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>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence
          Length = 219476

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tctgaaacaacagctgtgtc 122
             ||||||||||||||||||||
Sbjct: 63759 tctgaaacaacagctgtgtc 63740
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>emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19, complete sequence
          Length = 177660

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   aatatattaacaataaagtttgta 180
             |||||||| |||||||||||||||
Sbjct: 17735 aatatattcacaataaagtttgta 17712
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>emb|CR391759.1| Gallus gallus finished cDNA, clone ChEST469n6
          Length = 917

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 gtttctcgagtgattgttgt 571
           ||||||||||||||||||||
Sbjct: 45  gtttctcgagtgattgttgt 64
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>gb|AF125951.1| Caenorhabditis elegans cosmid D2063, complete sequence
          Length = 18125

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  caaaaatttctggaacatcc 348
            ||||||||||||||||||||
Sbjct: 1650 caaaaatttctggaacatcc 1669
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>ref|NM_071793.4| Caenorhabditis elegans Nuclear Hormone Receptor family member
           (nhr-125) (nhr-125) mRNA, complete cds
          Length = 2339

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 caaaaatttctggaacatcc 348
           ||||||||||||||||||||
Sbjct: 179 caaaaatttctggaacatcc 160
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>emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in linkage group 1,
             complete sequence
          Length = 194023

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   tttacacaaaaacaaaaatt 336
             ||||||||||||||||||||
Sbjct: 64816 tttacacaaaaacaaaaatt 64797
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>gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complete sequence
          Length = 188914

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    atacaaatgcatacaaaccc 49
             ||||||||||||||||||||
Sbjct: 43849 atacaaatgcatacaaaccc 43868
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>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete
              sequence
          Length = 240555

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    aaaaacaaaaatttctggaa 343
              ||||||||||||||||||||
Sbjct: 149380 aaaaacaaaaatttctggaa 149361
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>emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, complete sequence
          Length = 212049

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 446   acagaagcaagaagccctctcttg 469
             ||||||||||||| ||||||||||
Sbjct: 55877 acagaagcaagaaaccctctcttg 55900
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>emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 in linkage group 1,
             complete sequence
          Length = 207004

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 446   acagaagcaagaagccctctcttg 469
             ||||||||||||| ||||||||||
Sbjct: 91754 acagaagcaagaaaccctctcttg 91777
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>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    gcctacttattctgaaacaa 112
             ||||||||||||||||||||
Sbjct: 70811 gcctacttattctgaaacaa 70792
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    ctggtcctcgacgaggttgg 445
              ||||||||||||||||||||
Sbjct: 941296 ctggtcctcgacgaggttgg 941315
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>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete
              sequence
          Length = 299153

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    acaaaaacaaaaatttctgg 341
              ||||||||||||||||||||
Sbjct: 273911 acaaaaacaaaaatttctgg 273930
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>emb|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-804M7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163923

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   acaaaaacaaaaatttctgg 341
             ||||||||||||||||||||
Sbjct: 71834 acaaaaacaaaaatttctgg 71853
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>emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in linkage group 21,
             complete sequence
          Length = 253718

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 446   acagaagcaagaagccctctcttg 469
             ||||||||||||| ||||||||||
Sbjct: 99165 acagaagcaagaaaccctctcttg 99188
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>emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1,
             complete sequence
          Length = 211668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   tttacacaaaaacaaaaatt 336
             ||||||||||||||||||||
Sbjct: 79436 tttacacaaaaacaaaaatt 79417
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     atatattaacaataaagttt 177
               ||||||||||||||||||||
Sbjct: 2011992 atatattaacaataaagttt 2011973
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>gb|AC111202.5| Mus musculus BAC clone RP23-338I3 from 9, complete sequence
          Length = 200266

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    atattaacaataaagtttgt 179
              ||||||||||||||||||||
Sbjct: 187047 atattaacaataaagtttgt 187028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,107,503
Number of Sequences: 3902068
Number of extensions: 7107503
Number of successful extensions: 137483
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137115
Number of HSP's gapped (non-prelim): 352
length of query: 668
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 645
effective length of database: 17,143,297,704
effective search space: 11057427019080
effective search space used: 11057427019080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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