ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11d11 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 191 bits (485), Expect = 2e-48 Identities = 100/114 (87%), Positives = 106/114 (92%), Gaps = 1/114 (0%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VKRTCYAQASQIRQIRRKMVEIM NQA+SCDLKELV+KFIPEVIGKEIEKATSSIFPLQN Sbjct: 149 VKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 350 V+VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 209 VFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 176 bits (446), Expect = 6e-44 Identities = 89/112 (79%), Positives = 98/112 (87%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VKRTCYAQ+SQI+QIRRKM EIMV QA +CDLKELV KFIPE IG+EIEKATSSI+PLQN Sbjct: 149 VKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 353 V++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 209 VFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 174 bits (441), Expect = 2e-43 Identities = 86/110 (78%), Positives = 95/110 (86%) Frame = -1 Query: 685 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 506 KRTCYAQ+SQIRQIRRKM EIMVNQA SCDLK+LV KFIPE IG+EIEKATSSI+PLQNV Sbjct: 150 KRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNV 209 Query: 505 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 356 ++RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 210 FIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 167 bits (424), Expect = 2e-41 Identities = 84/113 (74%), Positives = 96/113 (84%), Gaps = 1/113 (0%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VKRTCYAQ+SQIRQIRRKM EIMV +A+SCDLKELV KFIPE IG+EIEKAT I+PLQN Sbjct: 149 VKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 353 V++RKVKILKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 209 VFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 157 bits (398), Expect = 2e-38 Identities = 84/114 (73%), Positives = 95/114 (83%), Gaps = 2/114 (1%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQ-AASCDLKELVNKFIPEVIGKEIEKATSSIFPLQ 512 VKRTCYAQ+SQIRQIR KM EIM+ + A+SCDLKELV KFIPE IGK+IEKAT I+PLQ Sbjct: 149 VKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQ 208 Query: 511 NVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 353 NV++RKVKILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 209 NVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 125 bits (314), Expect = 1e-28 Identities = 62/94 (65%), Positives = 78/94 (82%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VK+T YAQ+SQIR IR+KM +++ NQ +SC ++ELV K IPEVIG+EIE+AT SIFPLQN Sbjct: 149 VKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 407 V VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 209 VLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 124 bits (311), Expect = 3e-28 Identities = 66/93 (70%), Positives = 77/93 (82%), Gaps = 1/93 (1%) Frame = -1 Query: 682 RTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSS-IFPLQNV 506 R YAQ+SQI IRRKM EIMV +A +CDLKELV KFIPEVIGKEI++ S I+PLQ+ Sbjct: 149 RNFYAQSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQST 207 Query: 505 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 407 ++RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 208 FIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 123 bits (308), Expect = 6e-28 Identities = 61/108 (56%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KMVEIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 386 VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 122 bits (307), Expect = 8e-28 Identities = 61/110 (55%), Positives = 81/110 (73%), Gaps = 9/110 (8%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 386 VYVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 122 bits (307), Expect = 8e-28 Identities = 61/110 (55%), Positives = 81/110 (73%), Gaps = 9/110 (8%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 V++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL + Sbjct: 149 VRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 386 VYVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 122 bits (305), Expect = 1e-27 Identities = 60/108 (55%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 386 VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 121 bits (304), Expect = 2e-27 Identities = 60/111 (54%), Positives = 81/111 (72%), Gaps = 10/111 (9%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 386 VYVRKVK+LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 121 bits (303), Expect = 2e-27 Identities = 60/108 (55%), Positives = 80/108 (74%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 386 VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 121 bits (303), Expect = 2e-27 Identities = 60/108 (55%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 386 VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 121 bits (303), Expect = 2e-27 Identities = 60/94 (63%), Positives = 77/94 (81%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VK+T YAQ+SQIR I +KM +++ NQA C +KELV K IPEVIG+ IEKAT++I+PLQN Sbjct: 149 VKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 407 V+VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 209 VFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 120 bits (302), Expect = 3e-27 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 146 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 205 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 386 V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 206 VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 120 bits (302), Expect = 3e-27 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 386 V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 120 bits (302), Expect = 3e-27 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 386 V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 120 bits (302), Expect = 3e-27 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 386 V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 120 bits (301), Expect = 4e-27 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 386 V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 120 bits (301), Expect = 4e-27 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 386 V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 119 bits (299), Expect = 7e-27 Identities = 58/108 (53%), Positives = 81/108 (75%), Gaps = 7/108 (6%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK++EKA SI+PL + Sbjct: 149 IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 386 V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 209 VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 116 bits (290), Expect = 7e-26 Identities = 57/109 (52%), Positives = 79/109 (72%), Gaps = 8/109 (7%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VK+TCYAQ +Q++ IR+KMVEI+ + +S D+KE+VNK IP+ IGK+IEK+ I+PL + Sbjct: 149 VKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHD 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 386 V + KVK+LK PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 209 VLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 111 bits (277), Expect = 2e-24 Identities = 53/104 (50%), Positives = 78/104 (75%), Gaps = 1/104 (0%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 +K T YAQ+S++R+ R+KM+EI+ + ++C L +L +K IPEVIG+EIEK+T +IFPLQN Sbjct: 149 IKETTYAQSSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 380 V++RKVK+LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 209 VHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 108 bits (270), Expect = 2e-23 Identities = 51/108 (47%), Positives = 74/108 (68%), Gaps = 8/108 (7%) Frame = -1 Query: 685 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 506 ++TCYAQ SQ+R+IR +M +I+ N+ + DLK+LVNK + I K+IEK+ I+PL +V Sbjct: 153 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDV 212 Query: 505 YVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 386 Y+RKVK+LK P+FD+ KL+E+HGD G +DRP+G E Sbjct: 213 YIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 107 bits (267), Expect = 3e-23 Identities = 53/103 (51%), Positives = 73/103 (70%), Gaps = 2/103 (1%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VK+T Y + S+IR+IR +M+ + + CDLKE+V+K IP+ IGK+IEK S ++PLQ Sbjct: 147 VKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQE 206 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 386 VY+RKVKI+K PK DLG+L ++HGD G K+DRPD E Sbjct: 207 VYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 101 bits (251), Expect = 2e-21 Identities = 49/85 (57%), Positives = 63/85 (74%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VKR YAQ+S IR IR+ + EI+ + + L +L +K IPEVI KEIE AT IFPLQN Sbjct: 149 VKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD 434 ++VRKVK+LK PKFD+G LM +HG+ Sbjct: 209 IHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 101 bits (251), Expect = 2e-21 Identities = 46/84 (54%), Positives = 62/84 (73%) Frame = -1 Query: 685 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 506 ++TCYAQ SQI+ IR KM I+ + S DLK +V K +P+ I K+IEKA ++PL +V Sbjct: 153 RKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDV 212 Query: 505 YVRKVKILKAPKFDLGKLMEVHGD 434 Y+RKVK+LK P+FDL LME+HGD Sbjct: 213 YIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 100 bits (250), Expect = 3e-21 Identities = 49/85 (57%), Positives = 62/85 (72%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 VKR YAQ+S IR IR+ + EI+ + L +L +K IPEVI KEIE AT IFPLQN Sbjct: 149 VKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQN 208 Query: 508 VYVRKVKILKAPKFDLGKLMEVHGD 434 ++VRKVK+LK PKFD+G LM +HG+ Sbjct: 209 IHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/66 (36%), Positives = 38/66 (57%) Frame = -1 Query: 667 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 488 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 130 QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIK 189 Query: 487 ILKAPK 470 +L+ P+ Sbjct: 190 VLEEPQ 195
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 46.2 bits (108), Expect = 9e-05 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -1 Query: 667 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 488 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 131 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIK 190 Query: 487 ILKAPK 470 +L P+ Sbjct: 191 VLGEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -1 Query: 667 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 488 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 132 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIK 191 Query: 487 ILKAPK 470 +L P+ Sbjct: 192 VLGEPE 197
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 44.3 bits (103), Expect = 4e-04 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Frame = -1 Query: 670 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIP----EVIGKEIEKATSSIFPLQNVY 503 A+ SQ R IR++M +++ A CD E + + + E I ++I++A I+P++ Sbjct: 122 AKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAE 181 Query: 502 VRKVKILKAP 473 +RK ++L+ P Sbjct: 182 IRKTEVLEEP 191
>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae| Length = 203 Score = 43.5 bits (101), Expect = 6e-04 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = -1 Query: 688 VKRTCY----AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIF 521 VK TC+ A++SQ++ IR MVEI+ +AA D + + + I + I + I+ Sbjct: 119 VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIY 178 Query: 520 PLQNVYVRKVKILKAP 473 PL+ V +RK ++ P Sbjct: 179 PLRRVEIRKTEVETIP 194
>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae| Length = 204 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = -1 Query: 688 VKRTCY----AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIF 521 VK TC+ A++SQ++ IR MV+I+ +A+ D + + + I + I + I+ Sbjct: 119 VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIY 178 Query: 520 PLQNVYVRKVKILKAP 473 PL+ V +RK ++ P Sbjct: 179 PLRRVEIRKTQVEAMP 194
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = -1 Query: 667 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 488 Q SQ R IR+ + +I+ +A + + V + + I EI K I+P++ VRK+K Sbjct: 134 QTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIK 193 Query: 487 ILKAP 473 +L P Sbjct: 194 VLAEP 198
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 V T A SQ IR+ + +I +A D + V I + +I + I+PL+ Sbjct: 124 VLTTYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRK 183 Query: 508 VYVRKVKILKAPK 470 V + K K+LKAPK Sbjct: 184 VEIEKTKLLKAPK 196
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 40.0 bits (92), Expect = 0.007 Identities = 20/65 (30%), Positives = 38/65 (58%) Frame = -1 Query: 667 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 488 + SQ R IR M +I+V +A+S + + + + + + EI K I+P++ V +RK++ Sbjct: 133 KTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIE 192 Query: 487 ILKAP 473 +L P Sbjct: 193 LLAEP 197
>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae| Length = 221 Score = 39.3 bits (90), Expect = 0.011 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -1 Query: 661 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 482 +Q +R+KM+E +V +AA D + + + + + ++ I P++ V + K+K+L Sbjct: 141 AQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVL 200 Query: 481 KAP 473 K P Sbjct: 201 KYP 203
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 38.9 bits (89), Expect = 0.015 Identities = 22/69 (31%), Positives = 35/69 (50%) Frame = -1 Query: 679 TCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYV 500 T A SQ +IR+ + I+ +A+ E V + + +I + I+PL+ V V Sbjct: 124 TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEV 183 Query: 499 RKVKILKAP 473 K K+LKAP Sbjct: 184 EKTKLLKAP 192
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 37.4 bits (85), Expect = 0.043 Identities = 23/81 (28%), Positives = 40/81 (49%) Frame = -1 Query: 688 VKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 509 V T SQ IR+ + E + +A+ + + + + EI +A I+PL+ Sbjct: 122 VLTTYKCHQSQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRK 181 Query: 508 VYVRKVKILKAPKFDLGKLME 446 + K K+LK P+ +LGK +E Sbjct: 182 AEIEKTKVLKVPE-NLGKQVE 201
>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae| Length = 215 Score = 37.0 bits (84), Expect = 0.057 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = -1 Query: 649 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 470 QIR+ + + ++N+ S E V I + I ++ AT I+PL+ + VRK +++ Sbjct: 137 QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSELV---- 192 Query: 469 FDLGKLMEVH 440 L + E+H Sbjct: 193 -SLSGISEIH 201
>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae| Length = 213 Score = 35.8 bits (81), Expect = 0.13 Identities = 24/94 (25%), Positives = 44/94 (46%) Frame = -1 Query: 670 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKV 491 A ASQ + IRR M++++ A ++L++ + + I I+PL+ V ++K Sbjct: 126 ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKT 185 Query: 490 KILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGD 389 + P+ EV + E+ V +D D D Sbjct: 186 TLEARPE-------EVAAE--EETAVDVDEEDVD 210
>RS3A_METTH (O27630) 30S ribosomal protein S3Ae| Length = 195 Score = 34.3 bits (77), Expect = 0.37 Identities = 19/66 (28%), Positives = 35/66 (53%) Frame = -1 Query: 670 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKV 491 A++SQ + +R+ + E + A+ +ELV + I EI I+PL+ V + K Sbjct: 129 AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKS 188 Query: 490 KILKAP 473 ++L+ P Sbjct: 189 RVLEEP 194
>RS3A_METJA (P54059) 30S ribosomal protein S3Ae| Length = 222 Score = 33.9 bits (76), Expect = 0.48 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = -1 Query: 670 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKV 491 A Q IR+KM EI+ A + V + + ++I+ IFP++NV + K Sbjct: 136 ANTKQKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKS 195 Query: 490 KILKAPK 470 ++L K Sbjct: 196 EVLSLAK 202
>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13| (Nucleotide-binding oligomerization domain protein 14) Length = 1043 Score = 30.8 bits (68), Expect = 4.1 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = +1 Query: 76 LEITTNNTVEHKVHANIKHIWQE*TKYLVSTHNLHPESNTNKTR*LNA--G*ECRQKYSR 249 LEI + + ++HA W LV+ NLH +N ++ G K R Sbjct: 700 LEILETSKFDSRMHA-----WNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPR 754 Query: 250 NQPSKLTTKFTTPRWHIYHLLDKKQQNS 333 + KLT K TP W + L+ Q NS Sbjct: 755 CKVQKLTCKSVTPEWVLQDLIIALQGNS 782
>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae| Length = 215 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/97 (20%), Positives = 43/97 (44%) Frame = -1 Query: 649 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 470 +IR+ + +V++ + + V I + ++ +AT +I+PL+ + +RK Sbjct: 137 EIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYPLRKIEIRK-------- 188 Query: 469 FDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVA 359 +L+ + G + P +E PG E +A Sbjct: 189 ---SELVSLSG---------MQEPQKNEPAPGGEAIA 213
>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae| Length = 209 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/61 (21%), Positives = 32/61 (52%) Frame = -1 Query: 664 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 485 A++ ++R K++ + + S L EL I + + +I ++P++ + +RK ++ Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190 Query: 484 L 482 L Sbjct: 191 L 191
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 562 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 386 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 385 VIPGAEEV 362 + PG ++ Sbjct: 847 LPPGVNQL 854
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 562 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 386 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 385 VIPGAEEV 362 + PG ++ Sbjct: 867 LPPGVNQL 874 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,451,586 Number of Sequences: 219361 Number of extensions: 1499663 Number of successful extensions: 3518 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 3420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3513 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
