Clone Information

BLAST Search Result

Clone Name	rbags11c21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	90	1e-14
2	dbj\|AP002897.2\| Oryza sativa (japonica cultivar-group) genomic D...	90	1e-14
3	dbj\|AK111993.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
4	dbj\|AK065278.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
5	gb\|BT018104.1\| Zea mays clone EL01N0553C09.c mRNA sequence	52	0.002
6	gb\|BT023981.1\| Zea mays clone EL01N0308E05 mRNA sequence	52	0.002
7	gb\|AY106996.1\| Zea mays PCO068905 mRNA sequence	52	0.002
8	gb\|AC108148.5\| Homo sapiens BAC clone RP11-444B12 from 4, comple...	46	0.15
9	gb\|BT016953.1\| Zea mays clone E04912705E08.c mRNA sequence	42	2.3
10	gb\|AC145984.3\| Pan troglodytes BAC clone RP43-17F10 from 7, comp...	42	2.3
11	gb\|AC146154.3\| Pan troglodytes BAC clone RP43-37E8 from 7, compl...	42	2.3
12	gb\|AC091819.3\| Homo sapiens chromosome 5 clone CTC-264O10, compl...	42	2.3
13	gb\|AC011395.5\| Homo sapiens chromosome 5 clone CTB-187I2, comple...	42	2.3
14	ref\|XM_392510.2\| PREDICTED: Apis mellifera similar to GA18878-PA...	42	2.3
15	gb\|AC010420.11\| Homo sapiens chromosome 5 clone CTD-2187J20, com...	42	2.3
16	gb\|AC115004.14\| Mus musculus chromosome 3, clone RP24-182K13, co...	42	2.3
17	emb\|AL365475.1\|CNS05TF6 Human chromosome 14 DNA sequence BAC R-4...	42	2.3
18	emb\|AL355833.4\|CNS05TCS Human chromosome 14 DNA sequence BAC R-2...	42	2.3
19	gb\|AC121362.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.2
20	gb\|AC105459.1\| Homo sapiens BAC clone RP11-115D14 from 7, comple...	40	9.2
21	ref\|XM_130125.6\| PREDICTED: Mus musculus RIKEN cDNA 1700007K13 g...	40	9.2
22	ref\|XM_976934.1\| PREDICTED: Mus musculus RIKEN cDNA 1700007K13 g...	40	9.2
23	ref\|XM_914418.2\| PREDICTED: Mus musculus RIKEN cDNA 1700007K13 g...	40	9.2
24	emb\|CT025840.2\| Medicago truncatula chromosome 5 clone mth4-39c2...	40	9.2
25	emb\|BX936334.12\| Zebrafish DNA sequence from clone DKEY-117L19 i...	40	9.2
26	gb\|AC004382.1\|HUAC004382 Homo sapiens Chromosome 16 BAC clone CI...	40	9.2
27	emb\|Z70686.1\|CER10H10 Caenorhabditis elegans Cosmid R10H10, comp...	40	9.2
28	gb\|AC131234.3\| Homo sapiens 12 BAC RP11-308F13 (Roswell Park Can...	40	9.2
29	emb\|AL137067.7\| Human DNA sequence from clone RP11-13B9 on chrom...	40	9.2
30	gb\|AC113054.14\| Mus musculus chromosome 15, clone RP23-251L21, c...	40	9.2
31	gb\|AC160396.1\| Pan troglodytes BAC clone CH251-354A6 from chromo...	40	9.2
32	gb\|AC093244.2\| Homo sapiens chromosome 5 clone RP11-113I22, comp...	40	9.2
33	gb\|AC018691.10\| Homo sapiens BAC clone RP11-547F10 from 2, compl...	40	9.2
34	emb\|BX510648.5\| Zebrafish DNA sequence from clone CH211-155O9 in...	40	9.2
35	dbj\|AK005731.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	9.2
36	gb\|BC048581.1\| Mus musculus RIKEN cDNA 1700007K13 gene, mRNA (cD...	40	9.2
37	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
38	gb\|AC161477.4\| Pan troglodytes BAC clone CH251-168J20 from chrom...	40	9.2
39	gb\|AC154744.2\| Mus musculus BAC clone RP24-394N17 from chromosom...	40	9.2
40	gb\|AC009052.8\| Homo sapiens chromosome 16 clone RP11-250E14, com...	40	9.2
41	gb\|AC079304.6\| Homo sapiens BAC clone RP11-389K20 from 2, comple...	40	9.2
42	ref\|XM_216027.3\| PREDICTED: Rattus norvegicus similar to hypothe...	40	9.2
43	emb\|BX294181.5\| Zebrafish DNA sequence from clone CH211-284E13 i...	40	9.2
44	gb\|AY927869.1\| Mus musculus pierce 1 mRNA, complete cds	40	9.2
45	gb\|AC113964.18\| Mus musculus chromosome 16, clone RP23-31O16, co...	40	9.2
46	gb\|AC134555.4\| Mus musculus BAC clone RP24-320K4 from 17, comple...	40	9.2
47	emb\|CT010463.9\| Mouse DNA sequence from clone RP23-193M19 on chr...	40	9.2
48	gb\|BC099566.1\| Mus musculus RIKEN cDNA 1700007K13 gene, mRNA (cD...	40	9.2
49	gb\|U20142.1\|CEU20142 Caenorhabditis elegans SPE-26 protein (spe-...	40	9.2
50	emb\|AL772249.6\| Mouse DNA sequence from clone RP23-430H1 on chro...	40	9.2

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 85/97 (87%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                            
Query: 353      ccttccaccatatgcaagatgacaacgaaaaggtacaatctggaacagagataatcaccg 412
                |||| |||||| | |||||||||||||||| ||||||| |||||||  ||| ||||||| 
Sbjct: 24531407 cctttcaccatctacaagatgacaacgaaa-ggtacaagctggaactcagaaaatcacca 24531465

                                                     
Query: 413      gagattgaagagatctcagcacccaatcaataatata 449
                ||||  |||||||||||||| ||||||||||||||||
Sbjct: 24531466 gagaccgaagagatctcagctcccaatcaataatata 24531502



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 564      ttctgttccagctgtaaccagg 585
                ||||||||||||||||||||||
Sbjct: 24531614 ttctgttccagctgtaaccagg 24531635

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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 85/97 (87%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                          
Query: 353    ccttccaccatatgcaagatgacaacgaaaaggtacaatctggaacagagataatcaccg 412
              |||| |||||| | |||||||||||||||| ||||||| |||||||  ||| ||||||| 
Sbjct: 111791 cctttcaccatctacaagatgacaacgaaa-ggtacaagctggaactcagaaaatcacca 111849

                                                   
Query: 413    gagattgaagagatctcagcacccaatcaataatata 449
              ||||  |||||||||||||| ||||||||||||||||
Sbjct: 111850 gagaccgaagagatctcagctcccaatcaataatata 111886



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 564    ttctgttccagctgtaaccagg 585
              ||||||||||||||||||||||
Sbjct: 111998 ttctgttccagctgtaaccagg 112019

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>dbj|AK111993.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D04, full
            insert sequence
          Length = 1673

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 85/97 (87%), Gaps = 1/97 (1%)
 Strand = Plus / Minus

                                                                        
Query: 353  ccttccaccatatgcaagatgacaacgaaaaggtacaatctggaacagagataatcaccg 412
            |||| |||||| | |||||||||||||||| ||||||| |||||||  ||| ||||||| 
Sbjct: 1263 cctttcaccatctacaagatgacaacgaaa-ggtacaagctggaactcagaaaatcacca 1205

                                                 
Query: 413  gagattgaagagatctcagcacccaatcaataatata 449
            ||||  |||||||||||||| ||||||||||||||||
Sbjct: 1204 gagaccgaagagatctcagctcccaatcaataatata 1168



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 564  ttctgttccagctgtaaccagg 585
            ||||||||||||||||||||||
Sbjct: 1056 ttctgttccagctgtaaccagg 1035

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>dbj|AK065278.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L16, full
            insert sequence
          Length = 3426

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 85/97 (87%), Gaps = 1/97 (1%)
 Strand = Plus / Minus

                                                                        
Query: 353  ccttccaccatatgcaagatgacaacgaaaaggtacaatctggaacagagataatcaccg 412
            |||| |||||| | |||||||||||||||| ||||||| |||||||  ||| ||||||| 
Sbjct: 3080 cctttcaccatgtacaagatgacaacgaaa-ggtacaagctggaactcagaaaatcacca 3022

                                                 
Query: 413  gagattgaagagatctcagcacccaatcaataatata 449
            ||||  |||||||||||||| ||||||||||||||||
Sbjct: 3021 gagaccgaagagatctcagctcccaatcaataatata 2985



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 564  ttctgttccagctgtaaccagg 585
            ||||||||||||||||||||||
Sbjct: 2871 ttctgttccagctgtaaccagg 2850

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>gb|BT018104.1| Zea mays clone EL01N0553C09.c mRNA sequence
          Length = 1707

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 427  ctcagcacccaatcaataatatactcttca 456
            |||||| |||||||||||||||||||||||
Sbjct: 1303 ctcagctcccaatcaataatatactcttca 1274



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 114/138 (82%), Gaps = 4/138 (2%)
 Strand = Plus / Minus

                                                                        
Query: 524  ctttggttaattggacactggcctccagttccaaatatgtttctgttccagctgtaacca 583
            ||||||||||||||  |||||| |||||||| ||| |||||  |||||||| ||| ||||
Sbjct: 1214 ctttggttaattgggtactggc-tccagttctaaa-atgttg-tgttccagttgtgacca 1158

                                                                        
Query: 584  ggcagcaactagttggcgcatttacctcatgctaaggttgctcagatcatccacaacatg 643
              |||||||| ||| | ||||| |||  ||||| ||| |||||| |||||| |||| |||
Sbjct: 1157 ttcagcaacttgttcgtgcatt-accgaatgcttaggctgctcaaatcatctacaatatg 1099

                              
Query: 644  catggtcccattcaaact 661
            ||  ||||||||||||||
Sbjct: 1098 cagagtcccattcaaact 1081

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>gb|BT023981.1| Zea mays clone EL01N0308E05 mRNA sequence
          Length = 2423

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 427  ctcagcacccaatcaataatatactcttca 456
            |||||| |||||||||||||||||||||||
Sbjct: 2298 ctcagctcccaatcaataatatactcttca 2269



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 113/138 (81%), Gaps = 4/138 (2%)
 Strand = Plus / Minus

                                                                        
Query: 524  ctttggttaattggacactggcctccagttccaaatatgtttctgttccagctgtaacca 583
            ||||||||||||||  ||||| ||||||||| ||| ||| ||  ||||||| ||| ||||
Sbjct: 2209 ctttggttaattgggtactgg-ctccagttctaaa-atg-ttgggttccagttgtgacca 2153

                                                                        
Query: 584  ggcagcaactagttggcgcatttacctcatgctaaggttgctcagatcatccacaacatg 643
              |||||||| ||| | ||| |||||  ||||| ||| |||||| |||||| |||| |||
Sbjct: 2152 ttcagcaacttgttcgtgca-ttaccgaatgcttaggctgctcaaatcatctacaatatg 2094

                              
Query: 644  catggtcccattcaaact 661
            ||  ||||||||||||||
Sbjct: 2093 cagagtcccattcaaact 2076

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>gb|AY106996.1| Zea mays PCO068905 mRNA sequence
          Length = 1333

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 427 ctcagcacccaatcaataatatactcttca 456
           |||||| |||||||||||||||||||||||
Sbjct: 900 ctcagctcccaatcaataatatactcttca 871



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 114/138 (82%), Gaps = 4/138 (2%)
 Strand = Plus / Minus

                                                                       
Query: 524 ctttggttaattggacactggcctccagttccaaatatgtttctgttccagctgtaacca 583
           ||||||||||||||  |||||| |||||||| ||| |||||  |||||||| ||| ||||
Sbjct: 811 ctttggttaattgggtactggc-tccagttctaaa-atgttg-tgttccagttgtgacca 755

                                                                       
Query: 584 ggcagcaactagttggcgcatttacctcatgctaaggttgctcagatcatccacaacatg 643
             |||||||| ||| | ||||| |||  ||||| ||| |||||| |||||| |||| |||
Sbjct: 754 ttcagcaacttgttcgtgcatt-accgaatgcttaggctgctcaaatcatctacaatatg 696

                             
Query: 644 catggtcccattcaaact 661
           ||  ||||||||||||||
Sbjct: 695 cagagtcccattcaaact 678

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>gb|AC108148.5| Homo sapiens BAC clone RP11-444B12 from 4, complete sequence
          Length = 93048

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 523   actttggttaattggacactggc 545
             |||||||||||||||||||||||
Sbjct: 26847 actttggttaattggacactggc 26825

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>gb|BT016953.1| Zea mays clone E04912705E08.c mRNA sequence
          Length = 974

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 178 gttttatgccaaaaattgttgttgt 202
           |||||||| ||||||||||||||||
Sbjct: 171 gttttatggcaaaaattgttgttgt 195

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>gb|AC145984.3| Pan troglodytes BAC clone RP43-17F10 from 7, complete sequence
          Length = 186825

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 457    aatgaatgcatcaagaagtta 477
              |||||||||||||||||||||
Sbjct: 161445 aatgaatgcatcaagaagtta 161425

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>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence
          Length = 240699

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 457    aatgaatgcatcaagaagtta 477
              |||||||||||||||||||||
Sbjct: 114089 aatgaatgcatcaagaagtta 114109

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>gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, complete sequence
          Length = 118603

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 163   ttgagattaataactgtttta 183
             |||||||||||||||||||||
Sbjct: 40202 ttgagattaataactgtttta 40222

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>gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, complete sequence
          Length = 96489

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   ttgagattaataactgtttta 183
             |||||||||||||||||||||
Sbjct: 38118 ttgagattaataactgtttta 38098

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>ref|XM_392510.2| PREDICTED: Apis mellifera similar to GA18878-PA (LOC408978), mRNA
          Length = 2489

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 28  ggacgaccgaaatacaatatc 48
           |||||||||||||||||||||
Sbjct: 968 ggacgaccgaaatacaatatc 988

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>gb|AC010420.11| Homo sapiens chromosome 5 clone CTD-2187J20, complete sequence
          Length = 88736

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 536   ggacactggcctccagttcca 556
             |||||||||||||||||||||
Sbjct: 77348 ggacactggcctccagttcca 77328

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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 161    gtttgagattaataactgttt 181
              |||||||||||||||||||||
Sbjct: 104503 gtttgagattaataactgttt 104523

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>emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-452D12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187947

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   ctgttgctgccaagcaacaaa 311
             |||||||||||||||||||||
Sbjct: 23296 ctgttgctgccaagcaacaaa 23276

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>emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-262M8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197817

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   ctgttgctgccaagcaacaaa 311
             |||||||||||||||||||||
Sbjct: 79825 ctgttgctgccaagcaacaaa 79805

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>gb|AC121362.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0009N21, complete sequence
          Length = 164925

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  aaaaggtacaatctggaaca 399
            ||||||||||||||||||||
Sbjct: 8137 aaaaggtacaatctggaaca 8118

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>gb|AC105459.1| Homo sapiens BAC clone RP11-115D14 from 7, complete sequence
          Length = 146098

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aaagtttgagattaataact 177
             ||||||||||||||||||||
Sbjct: 41703 aaagtttgagattaataact 41684

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>ref|XM_130125.6| PREDICTED: Mus musculus RIKEN cDNA 1700007K13 gene (1700007K13Rik),
           mRNA
          Length = 1018

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 573 cattgtaactggggtgaaag 554

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>ref|XM_976934.1| PREDICTED: Mus musculus RIKEN cDNA 1700007K13 gene (1700007K13Rik),
           mRNA
          Length = 1019

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 573 cattgtaactggggtgaaag 554

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>ref|XM_914418.2| PREDICTED: Mus musculus RIKEN cDNA 1700007K13 gene (1700007K13Rik),
           mRNA
          Length = 1018

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 573 cattgtaactggggtgaaag 554

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>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
          Length = 243542

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   ttcatggttcacaaaagttt 164
             ||||||||||||||||||||
Sbjct: 21528 ttcatggttcacaaaagttt 21547

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>emb|BX936334.12| Zebrafish DNA sequence from clone DKEY-117L19 in linkage group 8,
              complete sequence
          Length = 107810

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     caaaagttgcaaaggtaagg 109
              ||||||||||||||||||||
Sbjct: 105018 caaaagttgcaaaggtaagg 105037

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>gb|AC004382.1|HUAC004382 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-152E5, complete
             sequence
          Length = 217873

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 645   atggtcccattcaaactgtg 664
             ||||||||||||||||||||
Sbjct: 36914 atggtcccattcaaactgtg 36895

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>emb|Z70686.1|CER10H10 Caenorhabditis elegans Cosmid R10H10, complete sequence
          Length = 35056

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  gttttatgccaaaaattgtt 197
            ||||||||||||||||||||
Sbjct: 7906 gttttatgccaaaaattgtt 7925

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>gb|AC131234.3| Homo sapiens 12 BAC RP11-308F13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 16903

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 563   tttctgttccagctgtaaccaggc 586
             ||||| ||||||||||||||||||
Sbjct: 13925 tttcttttccagctgtaaccaggc 13902

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>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3
              Contains a gene for a novel protein similar to a
              glycosyltransferase, the gene for protein translocation
              complex beta (SEC61B), a novel gene for a protein similar
              to cytokeratin 8 (KRT8)and a CpG island, complete sequence
          Length = 197169

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    agagatctcagcacccaatc 440
              ||||||||||||||||||||
Sbjct: 126518 agagatctcagcacccaatc 126537

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>gb|AC113054.14| Mus musculus chromosome 15, clone RP23-251L21, complete sequence
          Length = 179314

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    ccaggcaacaaattcaagat 263
              ||||||||||||||||||||
Sbjct: 118763 ccaggcaacaaattcaagat 118744

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>gb|AC160396.1| Pan troglodytes BAC clone CH251-354A6 from chromosome unknown, complete
              sequence
          Length = 161979

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ttaacttggctaatttacat 79
              ||||||||||||||||||||
Sbjct: 109854 ttaacttggctaatttacat 109873

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>gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, complete sequence
          Length = 85927

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   aacaaaaagaaccaccaggcaaca 253
             ||||||||||||||||||| ||||
Sbjct: 64062 aacaaaaagaaccaccagggaaca 64039

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>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence
          Length = 187298

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 542    tggcctccagttccaaatatgtttctgt 569
              ||||||||||||||| ||||||| ||||
Sbjct: 105122 tggcctccagttccatatatgttgctgt 105095

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>emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in linkage group 5,
            complete sequence
          Length = 191453

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  aaaagtttgagattaataac 176
            ||||||||||||||||||||
Sbjct: 6005 aaaagtttgagattaataac 5986

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>dbj|AK005731.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700007K13 product:hypothetical protein,
           full insert sequence
          Length = 810

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 543 cattgtaactggggtgaaag 524

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>gb|BC048581.1| Mus musculus RIKEN cDNA 1700007K13 gene, mRNA (cDNA clone
           IMAGE:6706436), containing frame-shift errors
          Length = 812

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 514 cattgtaactggggtgaaag 495

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 380     aaaaggtacaatctggaaca 399
               ||||||||||||||||||||
Sbjct: 9131482 aaaaggtacaatctggaaca 9131463

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>gb|AC161477.4| Pan troglodytes BAC clone CH251-168J20 from chromosome unknown, complete
              sequence
          Length = 205823

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ttaacttggctaatttacat 79
              ||||||||||||||||||||
Sbjct: 163410 ttaacttggctaatttacat 163391

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>gb|AC154744.2| Mus musculus BAC clone RP24-394N17 from chromosome 12, complete
             sequence
          Length = 165140

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   ctcttcaaatgaatgcatca 469
             ||||||||||||||||||||
Sbjct: 84137 ctcttcaaatgaatgcatca 84156

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>gb|AC009052.8| Homo sapiens chromosome 16 clone RP11-250E14, complete sequence
          Length = 200557

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 645   atggtcccattcaaactgtg 664
             ||||||||||||||||||||
Sbjct: 84610 atggtcccattcaaactgtg 84591

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>gb|AC079304.6| Homo sapiens BAC clone RP11-389K20 from 2, complete sequence
          Length = 188132

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ttaacttggctaatttacat 79
             ||||||||||||||||||||
Sbjct: 15639 ttaacttggctaatttacat 15620

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>ref|XM_216027.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
           MGC29761 (predicted) (LOC296608), mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 428 cattgtaactggggtgaaag 409

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>emb|BX294181.5| Zebrafish DNA sequence from clone CH211-284E13 in linkage group 5,
            complete sequence
          Length = 171388

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  aaaagtttgagattaataac 176
            ||||||||||||||||||||
Sbjct: 9151 aaaagtttgagattaataac 9170

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>gb|AY927869.1| Mus musculus pierce 1 mRNA, complete cds
          Length = 504

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 478 cattgtaactggggtgaaag 459

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>gb|AC113964.18| Mus musculus chromosome 16, clone RP23-31O16, complete sequence
          Length = 213851

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    gaaaaggtacaatctggaac 398
              ||||||||||||||||||||
Sbjct: 131648 gaaaaggtacaatctggaac 131667

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>gb|AC134555.4| Mus musculus BAC clone RP24-320K4 from 17, complete sequence
          Length = 174388

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    tccaaatatgtttctgttcc 572
              ||||||||||||||||||||
Sbjct: 109377 tccaaatatgtttctgttcc 109358

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>emb|CT010463.9| Mouse DNA sequence from clone RP23-193M19 on chromosome 12, complete
              sequence
          Length = 250364

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    ctcttcaaatgaatgcatca 469
              ||||||||||||||||||||
Sbjct: 180834 ctcttcaaatgaatgcatca 180853

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>gb|BC099566.1| Mus musculus RIKEN cDNA 1700007K13 gene, mRNA (cDNA clone
           MGC:118342 IMAGE:30916995), complete cds
          Length = 833

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 cattgtaactggggtgaaag 345
           ||||||||||||||||||||
Sbjct: 533 cattgtaactggggtgaaag 514

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>gb|U20142.1|CEU20142 Caenorhabditis elegans SPE-26 protein (spe-26) gene, complete cds
          Length = 3987

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  gttttatgccaaaaattgtt 197
            ||||||||||||||||||||
Sbjct: 3211 gttttatgccaaaaattgtt 3192

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>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete
              sequence
          Length = 204907

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    cattgtaactggggtgaaag 345
              ||||||||||||||||||||
Sbjct: 100809 cattgtaactggggtgaaag 100828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,603,053
Number of Sequences: 3902068
Number of extensions: 6603053
Number of successful extensions: 119338
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119171
Number of HSP's gapped (non-prelim): 161
length of query: 675
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 652
effective length of database: 17,143,297,704
effective search space: 11177430103008
effective search space used: 11177430103008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result