| Clone Name | rbags11c13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507035.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1116_E04.3 mRNA Length = 1236 Score = 309 bits (156), Expect = 7e-81 Identities = 413/495 (83%), Gaps = 4/495 (0%) Strand = Plus / Minus Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280 ||||||| |||||||||||||||||||| || | ||||| || || || || || || | Sbjct: 953 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 894 Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338 ||| |||||||||||||||||| | || || || | |||||||| ||||| |||||||| Sbjct: 893 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 836 Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398 || |||||||||||| || || ||||||| ||| ||||| |||| ||||| || | Sbjct: 835 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 776 Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458 ||| |||||||| ||||| || ||| ||||| ||||||||||| || ||||| || || Sbjct: 775 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 716 Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518 ||||| |||| || || ||||| || ||||| ||||| || || ||||||||||| || Sbjct: 715 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 656 Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578 ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| || Sbjct: 655 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 596 Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638 ||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 595 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 536 Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 476 Query: 699 aatcagcttgtctcg 713 || ||||| ||||| Sbjct: 475 aacaagcttctctcg 461
>ref|XM_468331.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1157 Score = 309 bits (156), Expect = 7e-81 Identities = 413/495 (83%), Gaps = 4/495 (0%) Strand = Plus / Minus Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280 ||||||| |||||||||||||||||||| || | ||||| || || || || || || | Sbjct: 954 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 895 Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338 ||| |||||||||||||||||| | || || || | |||||||| ||||| |||||||| Sbjct: 894 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 837 Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398 || |||||||||||| || || ||||||| ||| ||||| |||| ||||| || | Sbjct: 836 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 777 Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458 ||| |||||||| ||||| || ||| ||||| ||||||||||| || ||||| || || Sbjct: 776 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 717 Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518 ||||| |||| || || ||||| || ||||| ||||| || || ||||||||||| || Sbjct: 716 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 657 Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578 ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| || Sbjct: 656 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 597 Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638 ||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 596 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 537 Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 477 Query: 699 aatcagcttgtctcg 713 || ||||| ||||| Sbjct: 476 aacaagcttctctcg 462
>dbj|AK059363.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E03, full insert sequence Length = 1236 Score = 309 bits (156), Expect = 7e-81 Identities = 413/495 (83%), Gaps = 4/495 (0%) Strand = Plus / Minus Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280 ||||||| |||||||||||||||||||| || | ||||| || || || || || || | Sbjct: 953 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 894 Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338 ||| |||||||||||||||||| | || || || | |||||||| ||||| |||||||| Sbjct: 893 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 836 Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398 || |||||||||||| || || ||||||| ||| ||||| |||| ||||| || | Sbjct: 835 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 776 Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458 ||| |||||||| ||||| || ||| ||||| ||||||||||| || ||||| || || Sbjct: 775 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 716 Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518 ||||| |||| || || ||||| || ||||| ||||| || || ||||||||||| || Sbjct: 715 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 656 Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578 ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| || Sbjct: 655 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 596 Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638 ||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 595 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 536 Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 476 Query: 699 aatcagcttgtctcg 713 || ||||| ||||| Sbjct: 475 aacaagcttctctcg 461
>dbj|AK099203.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118L21, full insert sequence Length = 1157 Score = 301 bits (152), Expect = 2e-78 Identities = 412/495 (83%), Gaps = 4/495 (0%) Strand = Plus / Minus Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280 ||||||| |||||||||||||||||||| || | ||||| || || || || || || | Sbjct: 954 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 895 Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338 ||| |||||||||||||||||| | || || || | |||||||| ||||| |||||| | Sbjct: 894 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtcgc 837 Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398 || |||||||||||| || || ||||||| ||| ||||| |||| ||||| || | Sbjct: 836 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 777 Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458 ||| |||||||| ||||| || ||| ||||| ||||||||||| || ||||| || || Sbjct: 776 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 717 Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518 ||||| |||| || || ||||| || ||||| ||||| || || ||||||||||| || Sbjct: 716 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 657 Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578 ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| || Sbjct: 656 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 597 Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638 ||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 596 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 537 Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 477 Query: 699 aatcagcttgtctcg 713 || ||||| ||||| Sbjct: 476 aacaagcttctctcg 462
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 167 bits (84), Expect = 6e-38 Identities = 108/116 (93%) Strand = Plus / Minus Query: 598 accttgtacggatgaagaagacccatgcaaatttgtaccctgcggcgttgtccgtcagaa 657 |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 34658427 accttgtatggatgaagaagacccatgcagatttgtaccctgcggcgttgtccatctgag 34658368 Query: 658 actttatgcatgcgccattgcagatcaatatctagtagatcaatcagcttgtctcg 713 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 34658367 actttatgcatgcgccattgcagatcaatatctagtagatcaacaagcttctctcg 34658312 Score = 85.7 bits (43), Expect = 2e-13 Identities = 237/298 (79%), Gaps = 4/298 (1%) Strand = Plus / Minus Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280 ||||||| |||||||||||||||||||| || | ||||| || || || || || || | Sbjct: 34659230 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 34659171 Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338 ||| |||||||||||||||||| | || || || | |||||||| ||||| |||||||| Sbjct: 34659170 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 34659113 Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398 || |||||||||||| || || ||||||| ||| ||||| |||| ||||| || | Sbjct: 34659112 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 34659053 Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458 ||| |||||||| ||||| || ||| ||||| ||||||||||| || ||||| || || Sbjct: 34659052 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 34658993 Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgc 516 ||||| |||| || || ||||| || ||||| ||||| || || |||||||||||| Sbjct: 34658992 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgc 34658935 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 520 cactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgtg 579 ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| ||| Sbjct: 34658854 cactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggtg 34658795 Query: 580 atctcatcgagtaagaggacct 601 || ||||| || ||||| |||| Sbjct: 34658794 atttcatcaagcaagagtacct 34658773 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tttagatttagatagataca 127 |||||||||||||||||||| Sbjct: 34351530 tttagatttagatagataca 34351511
>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E04 Length = 94096 Score = 167 bits (84), Expect = 6e-38 Identities = 108/116 (93%) Strand = Plus / Minus Query: 598 accttgtacggatgaagaagacccatgcaaatttgtaccctgcggcgttgtccgtcagaa 657 |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 15378 accttgtatggatgaagaagacccatgcagatttgtaccctgcggcgttgtccatctgag 15319 Query: 658 actttatgcatgcgccattgcagatcaatatctagtagatcaatcagcttgtctcg 713 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 15318 actttatgcatgcgccattgcagatcaatatctagtagatcaacaagcttctctcg 15263 Score = 85.7 bits (43), Expect = 2e-13 Identities = 237/298 (79%), Gaps = 4/298 (1%) Strand = Plus / Minus Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280 ||||||| |||||||||||||||||||| || | ||||| || || || || || || | Sbjct: 16181 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 16122 Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338 ||| |||||||||||||||||| | || || || | |||||||| ||||| |||||||| Sbjct: 16121 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 16064 Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398 || |||||||||||| || || ||||||| ||| ||||| |||| ||||| || | Sbjct: 16063 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 16004 Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458 ||| |||||||| ||||| || ||| ||||| ||||||||||| || ||||| || || Sbjct: 16003 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 15944 Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgc 516 ||||| |||| || || ||||| || ||||| ||||| || || |||||||||||| Sbjct: 15943 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgc 15886 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 520 cactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgtg 579 ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| ||| Sbjct: 15805 cactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggtg 15746 Query: 580 atctcatcgagtaagaggacct 601 || ||||| || ||||| |||| Sbjct: 15745 atttcatcaagcaagagtacct 15724
>ref|NM_100271.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G03905 mRNA, complete cds Length = 873 Score = 87.7 bits (44), Expect = 5e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 454 gtcgcccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctc 513 |||||||||||||| ||||||||||||||||| || || || ||||| || ||| ||||| Sbjct: 650 gtcgcccatgtctctagcccgtcgaatatgtgagttgcatacacgattgtagctcctctc 591 Query: 514 tgctcgcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatca 573 || || || ||||| |||||||| || || | ||||||||| | ||||| || || ||| Sbjct: 590 tgatcacattcttctttgaagaattccagcaaatccatccttgcaacgacgtctaggtca 531 Query: 574 accgtgatctcatcgagtaa 593 || |||| |||||||||||| Sbjct: 530 acagtgacctcatcgagtaa 511 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 652 tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704 |||||||| |||||||| |||||||| |||| ||||| || ||||||||||| Sbjct: 452 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 400
>emb|BX816147.1|CNS0ABV6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZE11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1404 Score = 87.7 bits (44), Expect = 5e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 454 gtcgcccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctc 513 |||||||||||||| ||||||||||||||||| || || || ||||| || ||| ||||| Sbjct: 1044 gtcgcccatgtctctagcccgtcgaatatgtgagttgcatacacgattgtagctcctctc 985 Query: 514 tgctcgcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatca 573 || || || ||||| |||||||| || || | ||||||||| | ||||| || || ||| Sbjct: 984 tgatcacattcttctttgaagaattccagcaaatccatccttgcaacgacgtctaggtca 925 Query: 574 accgtgatctcatcgagtaa 593 || |||| |||||||||||| Sbjct: 924 acagtgacctcatcgagtaa 905 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 652 tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704 |||||||| |||||||| |||||||| |||| ||||| || ||||||||||| Sbjct: 846 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 794
>gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence Length = 119914 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 454 gtcgcccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctc 513 |||||||||||||| ||||||||||||||||| || || || ||||| || ||| ||||| Sbjct: 61509 gtcgcccatgtctctagcccgtcgaatatgtgagttgcatacacgattgtagctcctctc 61568 Query: 514 tg 515 || Sbjct: 61569 tg 61570 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 652 tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704 |||||||| |||||||| |||||||| |||| ||||| || ||||||||||| Sbjct: 62300 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 62352
>ref|XM_387341.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07165.1) partial mRNA Length = 864 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Minus Query: 561 gacatcgagatcaaccgtgatctcatcgag 590 ||||||||||||||| |||||||||||||| Sbjct: 501 gacatcgagatcaacagtgatctcatcgag 472
>emb|BX816618.1|CNS0ABPL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZC03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1394 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 652 tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704 |||||||| |||||||| |||||||| |||| ||||| || ||||||||||| Sbjct: 836 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 784 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 455 tcgcccatgtctccagcccgtcgaatat 482 |||||||| |||| |||||||||||||| Sbjct: 1033 tcgcccatttctctagcccgtcgaatat 1006
>emb|CR352340.10| Zebrafish DNA sequence from clone CH211-191L23 in linkage group 17, complete sequence Length = 145947 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 tttcgctgaccttttcagctc 428 ||||||||||||||||||||| Sbjct: 42149 tttcgctgaccttttcagctc 42129
>gb|AC091780.14| Homo sapiens 3 BAC RP11-104G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 42081 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 ctgaccttttcagctcaccct 433 ||||||||||||||||||||| Sbjct: 29204 ctgaccttttcagctcaccct 29224
>emb|X04654.1|HSRNP70K Human mRNA for U1 RNA-associated 70K protein Length = 2693 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 acgaccgacagcaggttcttg 378 ||||||||||||||||||||| Sbjct: 584 acgaccgacagcaggttcttg 604
>gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complete sequence Length = 114085 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cttggtctcggacttcagcc 349 |||||||||||||||||||| Sbjct: 109830 cttggtctcggacttcagcc 109849
>emb|CR954187.2| Medicago truncatula chromosome 5 clone mth2-181i2, COMPLETE SEQUENCE Length = 128654 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gttatttagatttagataga 123 |||||||||||||||||||| Sbjct: 81391 gttatttagatttagataga 81410
>emb|AL031904.1|HS103M22 Human DNA sequence from clone RP1-103M22 on chromosome 6p24 Contains a CpG island, complete sequence Length = 140709 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 tttgttatttagatttagat 120 |||||||||||||||||||| Sbjct: 44230 tttgttatttagatttagat 44249
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tggtcacgacatcgagatca 573 |||||||||||||||||||| Sbjct: 3364170 tggtcacgacatcgagatca 3364151
>gb|AF479767.1| Rana catesbeiana monomeric alpha-macroglobulin mRNA, complete cds Length = 4470 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 tctgctcgcactcttccttg 531 |||||||||||||||||||| Sbjct: 4345 tctgctcgcactcttccttg 4326
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttagatttagatagataca 127 |||||||||||||||||||| Sbjct: 153576 tttagatttagatagataca 153595
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 559 acgacatcgagatcaaccgtgatc 582 |||||| ||||||||||||||||| Sbjct: 1901757 acgacaccgagatcaaccgtgatc 1901734
>gb|AC022898.11| Homo sapiens chromosome 15, clone RP11-554D20, complete sequence Length = 200380 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tttgttatttagatttagat 120 |||||||||||||||||||| Sbjct: 12821 tttgttatttagatttagat 12802
>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1548_F12 Length = 118814 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tttagatttagatagataca 127 |||||||||||||||||||| Sbjct: 49177 tttagatttagatagataca 49158
>emb|AL844608.18| Mouse DNA sequence from clone RP23-27L22 on chromosome 2, complete sequence Length = 207035 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 gaggagatccatcctggtca 559 |||||||||||||||||||| Sbjct: 99434 gaggagatccatcctggtca 99415
>gb|AF141925.1|ATLOVBSGC2 Aspergillus terreus lovastatin biosynthesis gene cluster, partial sequence Length = 43328 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 caggttcttggccgtcttgagctc 392 ||||||||||||||| |||||||| Sbjct: 6256 caggttcttggccgtgttgagctc 6279
>emb|AJ438407.1|SAL438407 Sinningia allagophylla chloroplast partial trnS-trnG intergenic spacer, specimen voucher Chautems 325 (G) Length = 592 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttatttagatttagatagat 124 |||||||||||||||||||| Sbjct: 152 ttatttagatttagatagat 133
>emb|AJ438406.1|SCU438406 Sinningia curtiflora chloroplast partial trnS-trnG intergenic spacer, specimen voucher Cervi et al. AC477 (UPCB) Length = 577 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttatttagatttagatagat 124 |||||||||||||||||||| Sbjct: 135 ttatttagatttagatagat 116
>emb|AJ438404.1|SVI438404 Sinningia villosa chloroplast partial trnS-trnG intergenic spacer, specimen voucher Chautems & Perret 99-059 (G) Length = 591 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttatttagatttagatagat 124 |||||||||||||||||||| Sbjct: 151 ttatttagatttagatagat 132
>emb|AJ438383.1|SSE438383 Sinningia sellowii chloroplast partial trnS-trnG intergenic spacer, specimen voucher Chautems & Perret 01-028 (G) Length = 600 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttatttagatttagatagat 124 |||||||||||||||||||| Sbjct: 156 ttatttagatttagatagat 137
>emb|AJ438380.1|STU438380 Sinningia tubiflora chloroplast partial trnS-trnG intergenic spacer, specimen voucher Chautems & Perret 97-011 (G) Length = 593 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttatttagatttagatagat 124 |||||||||||||||||||| Sbjct: 154 ttatttagatttagatagat 135
>emb|AJ438355.1|SAM438355 Sinningia amambayensis chloroplast partial trnS-trnG intergenic spacer, specimen voucher Salviani 1118 (Instituto Plantarum) Length = 517 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttatttagatttagatagat 124 |||||||||||||||||||| Sbjct: 156 ttatttagatttagatagat 137
>emb|AJ438364.1|SAG438364 Sinningia aggregata chloroplast partial trnS-trnG intergenic spacer, specimen voucher Chautems & Perret 97-001 (G) Length = 590 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttatttagatttagatagat 124 |||||||||||||||||||| Sbjct: 150 ttatttagatttagatagat 131
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ctcttccttgaagaagtcga 541 |||||||||||||||||||| Sbjct: 1123755 ctcttccttgaagaagtcga 1123774 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,291,642 Number of Sequences: 3902068 Number of extensions: 4291642 Number of successful extensions: 71360 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71185 Number of HSP's gapped (non-prelim): 169 length of query: 713 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 690 effective length of database: 17,143,297,704 effective search space: 11828875415760 effective search space used: 11828875415760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)