ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_507035.1| PREDICTED Oryza sativa (japonica cultivar-group... 309 7e-81
2ref|XM_468331.1| Oryza sativa (japonica cultivar-group), mRNA 309 7e-81
3dbj|AK059363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 7e-81
4dbj|AK099203.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 2e-78
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
6dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
7ref|NM_100271.1| Arabidopsis thaliana ATP binding / ATPase/ nucl... 88 5e-14
8emb|BX816147.1|CNS0ABV6 Arabidopsis thaliana Full-length cDNA Co... 88 5e-14
9gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 geno... 60 1e-05
10ref|XM_387341.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 52 0.003
11emb|BX816618.1|CNS0ABPL Arabidopsis thaliana Full-length cDNA Co... 50 0.010
12emb|CR352340.10| Zebrafish DNA sequence from clone CH211-191L23 ... 42 2.5
13gb|AC091780.14| Homo sapiens 3 BAC RP11-104G4 (Roswell Park Canc... 42 2.5
14emb|X04654.1|HSRNP70K Human mRNA for U1 RNA-associated 70K protein 42 2.5
15gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complet... 40 9.8
16emb|CR954187.2| Medicago truncatula chromosome 5 clone mth2-181i... 40 9.8
17emb|AL031904.1|HS103M22 Human DNA sequence from clone RP1-103M22... 40 9.8
18dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 9.8
19gb|AF479767.1| Rana catesbeiana monomeric alpha-macroglobulin mR... 40 9.8
20gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 40 9.8
21gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 9.8
22gb|AC022898.11| Homo sapiens chromosome 15, clone RP11-554D20, c... 40 9.8
23dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
24emb|AL844608.18| Mouse DNA sequence from clone RP23-27L22 on chr... 40 9.8
25gb|AF141925.1|ATLOVBSGC2 Aspergillus terreus lovastatin biosynth... 40 9.8
26emb|AJ438407.1|SAL438407 Sinningia allagophylla chloroplast part... 40 9.8
27emb|AJ438406.1|SCU438406 Sinningia curtiflora chloroplast partia... 40 9.8
28emb|AJ438404.1|SVI438404 Sinningia villosa chloroplast partial t... 40 9.8
29emb|AJ438383.1|SSE438383 Sinningia sellowii chloroplast partial ... 40 9.8
30emb|AJ438380.1|STU438380 Sinningia tubiflora chloroplast partial... 40 9.8
31emb|AJ438355.1|SAM438355 Sinningia amambayensis chloroplast part... 40 9.8
32emb|AJ438364.1|SAG438364 Sinningia aggregata chloroplast partial... 40 9.8
33gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 9.8

>ref|XM_507035.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1116_E04.3 mRNA
          Length = 1236

 Score =  309 bits (156), Expect = 7e-81
 Identities = 413/495 (83%), Gaps = 4/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280
           ||||||| |||||||||||||||||||| || |  ||||| || || || || || || |
Sbjct: 953 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 894

                                                                       
Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338
           ||| |||||||||||||||||| | || || ||  | |||||||| ||||| ||||||||
Sbjct: 893 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 836

                                                                       
Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398
            ||   |||||||||||| || || ||||||| ||| |||||  |||| ||||| || | 
Sbjct: 835 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 776

                                                                       
Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458
           ||| |||||||| |||||  || |||  ||||| ||||||||||| || ||||| || ||
Sbjct: 775 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 716

                                                                       
Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518
           |||||  ||||  || || ||||| || ||||| ||||| || || ||||||||||| ||
Sbjct: 715 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 656

                                                                       
Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578
            ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| ||
Sbjct: 655 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 596

                                                                       
Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638
           ||| ||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 595 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 536

                                                                       
Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698
           |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 476

                          
Query: 699 aatcagcttgtctcg 713
           ||  ||||| |||||
Sbjct: 475 aacaagcttctctcg 461



to top

>ref|XM_468331.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1157

 Score =  309 bits (156), Expect = 7e-81
 Identities = 413/495 (83%), Gaps = 4/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280
           ||||||| |||||||||||||||||||| || |  ||||| || || || || || || |
Sbjct: 954 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 895

                                                                       
Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338
           ||| |||||||||||||||||| | || || ||  | |||||||| ||||| ||||||||
Sbjct: 894 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 837

                                                                       
Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398
            ||   |||||||||||| || || ||||||| ||| |||||  |||| ||||| || | 
Sbjct: 836 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 777

                                                                       
Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458
           ||| |||||||| |||||  || |||  ||||| ||||||||||| || ||||| || ||
Sbjct: 776 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 717

                                                                       
Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518
           |||||  ||||  || || ||||| || ||||| ||||| || || ||||||||||| ||
Sbjct: 716 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 657

                                                                       
Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578
            ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| ||
Sbjct: 656 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 597

                                                                       
Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638
           ||| ||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 596 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 537

                                                                       
Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698
           |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 477

                          
Query: 699 aatcagcttgtctcg 713
           ||  ||||| |||||
Sbjct: 476 aacaagcttctctcg 462



to top

>dbj|AK059363.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E03, full
           insert sequence
          Length = 1236

 Score =  309 bits (156), Expect = 7e-81
 Identities = 413/495 (83%), Gaps = 4/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280
           ||||||| |||||||||||||||||||| || |  ||||| || || || || || || |
Sbjct: 953 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 894

                                                                       
Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338
           ||| |||||||||||||||||| | || || ||  | |||||||| ||||| ||||||||
Sbjct: 893 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 836

                                                                       
Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398
            ||   |||||||||||| || || ||||||| ||| |||||  |||| ||||| || | 
Sbjct: 835 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 776

                                                                       
Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458
           ||| |||||||| |||||  || |||  ||||| ||||||||||| || ||||| || ||
Sbjct: 775 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 716

                                                                       
Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518
           |||||  ||||  || || ||||| || ||||| ||||| || || ||||||||||| ||
Sbjct: 715 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 656

                                                                       
Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578
            ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| ||
Sbjct: 655 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 596

                                                                       
Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638
           ||| ||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 595 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 536

                                                                       
Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698
           |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 476

                          
Query: 699 aatcagcttgtctcg 713
           ||  ||||| |||||
Sbjct: 475 aacaagcttctctcg 461



to top

>dbj|AK099203.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118L21, full
           insert sequence
          Length = 1157

 Score =  301 bits (152), Expect = 2e-78
 Identities = 412/495 (83%), Gaps = 4/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 221 atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280
           ||||||| |||||||||||||||||||| || |  ||||| || || || || || || |
Sbjct: 954 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 895

                                                                       
Query: 281 aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338
           ||| |||||||||||||||||| | || || ||  | |||||||| ||||| |||||| |
Sbjct: 894 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtcgc 837

                                                                       
Query: 339 ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398
            ||   |||||||||||| || || ||||||| ||| |||||  |||| ||||| || | 
Sbjct: 836 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 777

                                                                       
Query: 399 gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458
           ||| |||||||| |||||  || |||  ||||| ||||||||||| || ||||| || ||
Sbjct: 776 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 717

                                                                       
Query: 459 ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgctc 518
           |||||  ||||  || || ||||| || ||||| ||||| || || ||||||||||| ||
Sbjct: 716 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgttc 657

                                                                       
Query: 519 gcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgt 578
            ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| ||
Sbjct: 656 acactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggt 597

                                                                       
Query: 579 gatctcatcgagtaagaggaccttgtacggatgaagaagacccatgcaaatttgtaccct 638
           ||| ||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 596 gatttcatcaagcaagagtaccttgtatggatgaagaagacccatgcagatttgtaccct 537

                                                                       
Query: 639 gcggcgttgtccgtcagaaactttatgcatgcgccattgcagatcaatatctagtagatc 698
           |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcggcgttgtccatctgagactttatgcatgcgccattgcagatcaatatctagtagatc 477

                          
Query: 699 aatcagcttgtctcg 713
           ||  ||||| |||||
Sbjct: 476 aacaagcttctctcg 462



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  167 bits (84), Expect = 6e-38
 Identities = 108/116 (93%)
 Strand = Plus / Minus

                                                                            
Query: 598      accttgtacggatgaagaagacccatgcaaatttgtaccctgcggcgttgtccgtcagaa 657
                |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || 
Sbjct: 34658427 accttgtatggatgaagaagacccatgcagatttgtaccctgcggcgttgtccatctgag 34658368

                                                                        
Query: 658      actttatgcatgcgccattgcagatcaatatctagtagatcaatcagcttgtctcg 713
                |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||
Sbjct: 34658367 actttatgcatgcgccattgcagatcaatatctagtagatcaacaagcttctctcg 34658312



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 237/298 (79%), Gaps = 4/298 (1%)
 Strand = Plus / Minus

                                                                            
Query: 221      atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280
                ||||||| |||||||||||||||||||| || |  ||||| || || || || || || |
Sbjct: 34659230 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 34659171

                                                                            
Query: 281      aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338
                ||| |||||||||||||||||| | || || ||  | |||||||| ||||| ||||||||
Sbjct: 34659170 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 34659113

                                                                            
Query: 339      ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398
                 ||   |||||||||||| || || ||||||| ||| |||||  |||| ||||| || | 
Sbjct: 34659112 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 34659053

                                                                            
Query: 399      gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458
                ||| |||||||| |||||  || |||  ||||| ||||||||||| || ||||| || ||
Sbjct: 34659052 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 34658993

                                                                          
Query: 459      ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgc 516
                |||||  ||||  || || ||||| || ||||| ||||| || || ||||||||||||
Sbjct: 34658992 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgc 34658935



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                            
Query: 520      cactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgtg 579
                ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| |||
Sbjct: 34658854 cactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggtg 34658795

                                      
Query: 580      atctcatcgagtaagaggacct 601
                || ||||| || ||||| ||||
Sbjct: 34658794 atttcatcaagcaagagtacct 34658773



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 108      tttagatttagatagataca 127
                ||||||||||||||||||||
Sbjct: 34351530 tttagatttagatagataca 34351511



to top

>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E04
          Length = 94096

 Score =  167 bits (84), Expect = 6e-38
 Identities = 108/116 (93%)
 Strand = Plus / Minus

                                                                         
Query: 598   accttgtacggatgaagaagacccatgcaaatttgtaccctgcggcgttgtccgtcagaa 657
             |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || 
Sbjct: 15378 accttgtatggatgaagaagacccatgcagatttgtaccctgcggcgttgtccatctgag 15319

                                                                     
Query: 658   actttatgcatgcgccattgcagatcaatatctagtagatcaatcagcttgtctcg 713
             |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||
Sbjct: 15318 actttatgcatgcgccattgcagatcaatatctagtagatcaacaagcttctctcg 15263



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 237/298 (79%), Gaps = 4/298 (1%)
 Strand = Plus / Minus

                                                                         
Query: 221   atcatcatcggtagtaggccatgtggcgcgacgcccggaaaggggaggcgtcgaacgggg 280
             ||||||| |||||||||||||||||||| || |  ||||| || || || || || || |
Sbjct: 16181 atcatcaacggtagtaggccatgtggcgtgaagatcggaacggtgaagcatcaaatggag 16122

                                                                         
Query: 281   aggggcgcctgggctgggtctcgacgagcgcgg--gctctttcttcgggagcttggtctc 338
             ||| |||||||||||||||||| | || || ||  | |||||||| ||||| ||||||||
Sbjct: 16121 aggagcgcctgggctgggtctc-agga-cggggatgttctttcttagggagtttggtctc 16064

                                                                         
Query: 339   ggacttcagccatgactccacgaccgacagcaggttcttggccgtcttgagctcttcgat 398
              ||   |||||||||||| || || ||||||| ||| |||||  |||| ||||| || | 
Sbjct: 16063 agatcgcagccatgactcgacaactgacagcaagtttttggcactctttagctcctcaac 16004

                                                                         
Query: 399   gtccgagtatttcgctgaccttttcagctcaccctcttggatgtacgcgatgtcggtcgc 458
             ||| |||||||| |||||  || |||  ||||| ||||||||||| || ||||| || ||
Sbjct: 16003 gtcagagtattttgctgattttctcaattcaccttcttggatgtatgcaatgtcagtagc 15944

                                                                       
Query: 459   ccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctctgc 516
             |||||  ||||  || || ||||| || ||||| ||||| || || ||||||||||||
Sbjct: 15943 ccatgattccaatccatcaaatatatgagtggcatagacaatggttgcttctctctgc 15886



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                         
Query: 520   cactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatcaaccgtg 579
             ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| |||
Sbjct: 15805 cactcttccttaaagaagtcaaggagatccattctagtcacaacatcaagatcaacggtg 15746

                                   
Query: 580   atctcatcgagtaagaggacct 601
             || ||||| || ||||| ||||
Sbjct: 15745 atttcatcaagcaagagtacct 15724



to top

>ref|NM_100271.1| Arabidopsis thaliana ATP binding / ATPase/
           nucleoside-triphosphatase/ nucleotide binding AT1G03905
           mRNA, complete cds
          Length = 873

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 454 gtcgcccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctc 513
           |||||||||||||| ||||||||||||||||| || || || ||||| || ||| |||||
Sbjct: 650 gtcgcccatgtctctagcccgtcgaatatgtgagttgcatacacgattgtagctcctctc 591

                                                                       
Query: 514 tgctcgcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatca 573
           || || || ||||| |||||||| || || | ||||||||| |  ||||| || || |||
Sbjct: 590 tgatcacattcttctttgaagaattccagcaaatccatccttgcaacgacgtctaggtca 531

                               
Query: 574 accgtgatctcatcgagtaa 593
           || |||| ||||||||||||
Sbjct: 530 acagtgacctcatcgagtaa 511



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 652 tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704
           |||||||| |||||||| |||||||| ||||  ||||| || |||||||||||
Sbjct: 452 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 400



to top

>emb|BX816147.1|CNS0ABV6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH30ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1404

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                        
Query: 454  gtcgcccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctc 513
            |||||||||||||| ||||||||||||||||| || || || ||||| || ||| |||||
Sbjct: 1044 gtcgcccatgtctctagcccgtcgaatatgtgagttgcatacacgattgtagctcctctc 985

                                                                        
Query: 514  tgctcgcactcttccttgaagaagtcgaggagatccatcctggtcacgacatcgagatca 573
            || || || ||||| |||||||| || || | ||||||||| |  ||||| || || |||
Sbjct: 984  tgatcacattcttctttgaagaattccagcaaatccatccttgcaacgacgtctaggtca 925

                                
Query: 574  accgtgatctcatcgagtaa 593
            || |||| ||||||||||||
Sbjct: 924  acagtgacctcatcgagtaa 905



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 652 tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704
           |||||||| |||||||| |||||||| ||||  ||||| || |||||||||||
Sbjct: 846 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 794



to top

>gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete
             sequence
          Length = 119914

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 454   gtcgcccatgtctccagcccgtcgaatatgtgggtggcgtagacgatcgtggcttctctc 513
             |||||||||||||| ||||||||||||||||| || || || ||||| || ||| |||||
Sbjct: 61509 gtcgcccatgtctctagcccgtcgaatatgtgagttgcatacacgattgtagctcctctc 61568

               
Query: 514   tg 515
             ||
Sbjct: 61569 tg 61570



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 652   tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704
             |||||||| |||||||| |||||||| ||||  ||||| || |||||||||||
Sbjct: 62300 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 62352



to top

>ref|XM_387341.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07165.1)
           partial mRNA
          Length = 864

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 561 gacatcgagatcaaccgtgatctcatcgag 590
           ||||||||||||||| ||||||||||||||
Sbjct: 501 gacatcgagatcaacagtgatctcatcgag 472



to top

>emb|BX816618.1|CNS0ABPL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH59ZC03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1394

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 652 tcagaaactttatgcatgcgccattgcagatcaatatctagtagatcaatcag 704
           |||||||| |||||||| |||||||| ||||  ||||| || |||||||||||
Sbjct: 836 tcagaaaccttatgcatacgccattgaagattgatatcaagaagatcaatcag 784



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 455  tcgcccatgtctccagcccgtcgaatat 482
            |||||||| |||| ||||||||||||||
Sbjct: 1033 tcgcccatttctctagcccgtcgaatat 1006



to top

>emb|CR352340.10| Zebrafish DNA sequence from clone CH211-191L23 in linkage group 17,
             complete sequence
          Length = 145947

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 408   tttcgctgaccttttcagctc 428
             |||||||||||||||||||||
Sbjct: 42149 tttcgctgaccttttcagctc 42129



to top

>gb|AC091780.14| Homo sapiens 3 BAC RP11-104G4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 42081

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 413   ctgaccttttcagctcaccct 433
             |||||||||||||||||||||
Sbjct: 29204 ctgaccttttcagctcaccct 29224



to top

>emb|X04654.1|HSRNP70K Human mRNA for U1 RNA-associated 70K protein
          Length = 2693

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 358 acgaccgacagcaggttcttg 378
           |||||||||||||||||||||
Sbjct: 584 acgaccgacagcaggttcttg 604



to top

>gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complete sequence
          Length = 114085

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    cttggtctcggacttcagcc 349
              ||||||||||||||||||||
Sbjct: 109830 cttggtctcggacttcagcc 109849



to top

>emb|CR954187.2| Medicago truncatula chromosome 5 clone mth2-181i2, COMPLETE SEQUENCE
          Length = 128654

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   gttatttagatttagataga 123
             ||||||||||||||||||||
Sbjct: 81391 gttatttagatttagataga 81410



to top

>emb|AL031904.1|HS103M22 Human DNA sequence from clone RP1-103M22 on chromosome 6p24 Contains a
             CpG island, complete sequence
          Length = 140709

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tttgttatttagatttagat 120
             ||||||||||||||||||||
Sbjct: 44230 tttgttatttagatttagat 44249



to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 554     tggtcacgacatcgagatca 573
               ||||||||||||||||||||
Sbjct: 3364170 tggtcacgacatcgagatca 3364151



to top

>gb|AF479767.1| Rana catesbeiana monomeric alpha-macroglobulin mRNA, complete cds
          Length = 4470

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 512  tctgctcgcactcttccttg 531
            ||||||||||||||||||||
Sbjct: 4345 tctgctcgcactcttccttg 4326



to top

>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    tttagatttagatagataca 127
              ||||||||||||||||||||
Sbjct: 153576 tttagatttagatagataca 153595



to top

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 559     acgacatcgagatcaaccgtgatc 582
               |||||| |||||||||||||||||
Sbjct: 1901757 acgacaccgagatcaaccgtgatc 1901734



to top

>gb|AC022898.11| Homo sapiens chromosome 15, clone RP11-554D20, complete sequence
          Length = 200380

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   tttgttatttagatttagat 120
             ||||||||||||||||||||
Sbjct: 12821 tttgttatttagatttagat 12802



to top

>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1548_F12
          Length = 118814

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   tttagatttagatagataca 127
             ||||||||||||||||||||
Sbjct: 49177 tttagatttagatagataca 49158



to top

>emb|AL844608.18| Mouse DNA sequence from clone RP23-27L22 on chromosome 2, complete
             sequence
          Length = 207035

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   gaggagatccatcctggtca 559
             ||||||||||||||||||||
Sbjct: 99434 gaggagatccatcctggtca 99415



to top

>gb|AF141925.1|ATLOVBSGC2 Aspergillus terreus lovastatin biosynthesis gene cluster, partial
            sequence
          Length = 43328

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 369  caggttcttggccgtcttgagctc 392
            ||||||||||||||| ||||||||
Sbjct: 6256 caggttcttggccgtgttgagctc 6279



to top

>emb|AJ438407.1|SAL438407 Sinningia allagophylla chloroplast partial trnS-trnG intergenic
           spacer, specimen voucher Chautems 325 (G)
          Length = 592

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ttatttagatttagatagat 124
           ||||||||||||||||||||
Sbjct: 152 ttatttagatttagatagat 133



to top

>emb|AJ438406.1|SCU438406 Sinningia curtiflora chloroplast partial trnS-trnG intergenic
           spacer, specimen voucher Cervi et al. AC477 (UPCB)
          Length = 577

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ttatttagatttagatagat 124
           ||||||||||||||||||||
Sbjct: 135 ttatttagatttagatagat 116



to top

>emb|AJ438404.1|SVI438404 Sinningia villosa chloroplast partial trnS-trnG intergenic spacer,
           specimen voucher Chautems & Perret 99-059 (G)
          Length = 591

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ttatttagatttagatagat 124
           ||||||||||||||||||||
Sbjct: 151 ttatttagatttagatagat 132



to top

>emb|AJ438383.1|SSE438383 Sinningia sellowii chloroplast partial trnS-trnG intergenic spacer,
           specimen voucher Chautems & Perret 01-028 (G)
          Length = 600

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ttatttagatttagatagat 124
           ||||||||||||||||||||
Sbjct: 156 ttatttagatttagatagat 137



to top

>emb|AJ438380.1|STU438380 Sinningia tubiflora chloroplast partial trnS-trnG intergenic
           spacer, specimen voucher Chautems & Perret 97-011 (G)
          Length = 593

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ttatttagatttagatagat 124
           ||||||||||||||||||||
Sbjct: 154 ttatttagatttagatagat 135



to top

>emb|AJ438355.1|SAM438355 Sinningia amambayensis chloroplast partial trnS-trnG intergenic
           spacer, specimen voucher Salviani 1118 (Instituto
           Plantarum)
          Length = 517

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ttatttagatttagatagat 124
           ||||||||||||||||||||
Sbjct: 156 ttatttagatttagatagat 137



to top

>emb|AJ438364.1|SAG438364 Sinningia aggregata chloroplast partial trnS-trnG intergenic
           spacer, specimen voucher Chautems & Perret 97-001 (G)
          Length = 590

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ttatttagatttagatagat 124
           ||||||||||||||||||||
Sbjct: 150 ttatttagatttagatagat 131



to top

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 522     ctcttccttgaagaagtcga 541
               ||||||||||||||||||||
Sbjct: 1123755 ctcttccttgaagaagtcga 1123774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,291,642
Number of Sequences: 3902068
Number of extensions: 4291642
Number of successful extensions: 71360
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71185
Number of HSP's gapped (non-prelim): 169
length of query: 713
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 690
effective length of database: 17,143,297,704
effective search space: 11828875415760
effective search space used: 11828875415760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top