ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11c10 |
|---|---|
| Clone Library Name | barley_pub |
>SPCS2_ARATH (P58684) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 192 Score = 220 bits (561), Expect = 2e-57 Identities = 104/155 (67%), Positives = 129/155 (83%) Frame = -2 Query: 621 VKAKGYAENTRLGNWKLLIGTVVIAIALLAQFYPKKFPQNREFLLGCIALYVVMNVVLLI 442 V ++GY E+ RL N KL++GT++I +AL+AQFY KKFP+NR+FL+GCIALYVV+N VL + Sbjct: 36 VTSRGYKEDVRLSNLKLILGTIIIVVALVAQFYNKKFPENRDFLIGCIALYVVLNAVLQL 95 Query: 441 LSYTKEKDAIIFTHPPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTK 262 + YTKEK+AI+FT+PP GSF +TGLV+SSKLPRFSD Y L+I SADP+SISA K V TK Sbjct: 96 ILYTKEKNAILFTYPPEGSFTSTGLVVSSKLPRFSDQYTLTIDSADPKSISAGKSVQLTK 155 Query: 261 SVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 SVT+WFTK+GVLVEGLFWKDVE LI +Y E K Sbjct: 156 SVTQWFTKDGVLVEGLFWKDVEALIKNYAEEEPKK 190
>SPCS2_XENTR (Q5M8Y1) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 201 Score = 75.5 bits (184), Expect = 1e-13 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 4/154 (2%) Frame = -2 Query: 606 YAENTRLGNWKLLIGTV--VIAIALLAQFYPKKFPQNREFLLGCIALYVVMNVVLLILSY 433 Y EN L + +L+I T+ V AI L Y FP+++ L C+ Y +M +L I + Sbjct: 49 YVENFCLIDGRLIICTISCVFAIVALVWDYLHPFPESKPVLAICVISYFLMMGILTIYTS 108 Query: 432 TKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKS 259 KEK + H PAG + +SS L RF D Y L + ++ A + FTKS Sbjct: 109 YKEKSIFLVAHRKDPAGMDPDDIWHLSSSLKRFDDKYTLKVTYISGKT-KAQRDAEFTKS 167 Query: 258 VTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 + ++F G LV LF +V +L D E+K+K Sbjct: 168 IARFFDDNGTLVMDLFEPEVSKLHDSLAMEKKTK 201
>SPCS2_BRARE (Q5BJI9) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 201 Score = 70.9 bits (172), Expect = 3e-12 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 4/159 (2%) Frame = -2 Query: 621 VKAKGYAENTRLGNWKLLIGTV--VIAIALLAQFYPKKFPQNREFLLGCIALYVVMNVVL 448 ++ GY E+ L + +L I TV + I L Y FP+++ L C+ Y +M +L Sbjct: 44 IEKYGYLESFNLVDGRLFICTVSCLFTIVALIWDYLHPFPESKPVLACCVVSYFIMMGIL 103 Query: 447 LILSYTKEKDAIIFT--HPPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPV 274 + + KEK+ + PAG + +SS L RF D Y L ++ D ++ + + Sbjct: 104 TLYTSYKEKNIFLVAMQKDPAGMDPDHSWCLSSSLKRFDDQYTLRMSFTDGKTKQSRE-T 162 Query: 273 HFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 FTKSV+ +F + G LV + K V +L D E+K+K Sbjct: 163 EFTKSVSVFFDENGTLVMDQYEKYVSKLHDTLATEKKTK 201
>SPCS2_MOUSE (Q9CYN2) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 69.7 bits (169), Expect = 7e-12 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Frame = -2 Query: 606 YAENTRLGNWKLLIGTVVIAIALLAQF--YPKKFPQNREFLLGCIALYVVMNVVLLILSY 433 Y EN L + +L I T+ A++A Y FP+++ L C+ Y VM +L I + Sbjct: 74 YVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTS 133 Query: 432 TKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKS 259 KEK + H P G + +SS L RF D Y L + + + FTKS Sbjct: 134 YKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKS 192 Query: 258 VTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 + K+F G LV + ++ RL D ERK K Sbjct: 193 IAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK 226
>SPCS2_CANFA (Q28250) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 69.7 bits (169), Expect = 7e-12 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Frame = -2 Query: 606 YAENTRLGNWKLLIGTVVIAIALLAQF--YPKKFPQNREFLLGCIALYVVMNVVLLILSY 433 Y EN L + +L I T+ A++A Y FP+++ L C+ Y VM +L I + Sbjct: 74 YVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTS 133 Query: 432 TKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKS 259 KEK + H P G + +SS L RF D Y L + + + FTKS Sbjct: 134 YKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKS 192 Query: 258 VTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 + K+F G LV + ++ RL D ERK K Sbjct: 193 IAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK 226
>SPCS2_PONPY (Q5RAY6) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 68.6 bits (166), Expect = 1e-11 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Frame = -2 Query: 606 YAENTRLGNWKLLIGTVVIAIALLAQF--YPKKFPQNREFLLGCIALYVVMNVVLLILSY 433 Y EN L + +L I T+ A++A Y FP+++ L C+ Y VM +L I + Sbjct: 74 YVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTS 133 Query: 432 TKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKS 259 KEK + H P G + +SS L RF D Y L + + + FTKS Sbjct: 134 YKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKS 192 Query: 258 VTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 + K+F G LV + ++ RL D ERK K Sbjct: 193 IAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK 226
>SPCS2_MACFA (Q4R512) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 68.6 bits (166), Expect = 1e-11 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Frame = -2 Query: 606 YAENTRLGNWKLLIGTVVIAIALLAQF--YPKKFPQNREFLLGCIALYVVMNVVLLILSY 433 Y EN L + +L I T+ A++A Y FP+++ L C+ Y VM +L I + Sbjct: 74 YVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTS 133 Query: 432 TKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKS 259 KEK + H P G + +SS L RF D Y L + + + FTKS Sbjct: 134 YKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKS 192 Query: 258 VTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 + K+F G LV + ++ RL D ERK K Sbjct: 193 IAKFFDHSGTLVMDAYEPEISRLHDSLAVERKIK 226
>SPCS2_HUMAN (Q15005) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 68.6 bits (166), Expect = 1e-11 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Frame = -2 Query: 606 YAENTRLGNWKLLIGTVVIAIALLAQF--YPKKFPQNREFLLGCIALYVVMNVVLLILSY 433 Y EN L + +L I T+ A++A Y FP+++ L C+ Y VM +L I + Sbjct: 74 YVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTS 133 Query: 432 TKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKS 259 KEK + H P G + +SS L RF D Y L + + + FTKS Sbjct: 134 YKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRT-KQQREAEFTKS 192 Query: 258 VTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 157 + K+F G LV + ++ RL D ERK K Sbjct: 193 IAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK 226
>SPCS2_CAEEL (Q9XWW1) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 180 Score = 40.4 bits (93), Expect = 0.004 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 2/142 (1%) Frame = -2 Query: 609 GYAENTRLGNWKLLIGTVVIAIALLAQFYP--KKFPQNREFLLGCIALYVVMNVVLLILS 436 G+ E+ L N +LLI + +A + A Y + FP+++ L C Y + +L + Sbjct: 34 GWTESHNLMNLRLLISFIGVAFSAFACGYDYYEPFPKSKIVLAVCSVSYFICMGILQMYQ 93 Query: 435 YTKEKDAIIFTHPPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKSV 256 + EKD I G + SS++ D Y LS A E S + TKS+ Sbjct: 94 WYVEKDCIYEATEVDGK-QSRKWAWSSEIKAHDDKYTLS-AEFKKEGRSGQGKI--TKSI 149 Query: 255 TKWFTKEGVLVEGLFWKDVERL 190 + +G ++ L K+V+ L Sbjct: 150 GAYIDNDGEIIVPLVKKEVDDL 171
>SPCS2_CAEBR (Q615A2) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 180 Score = 36.2 bits (82), Expect = 0.080 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 2/142 (1%) Frame = -2 Query: 609 GYAENTRLGNWKLLIGTVVIAIALLAQFYP--KKFPQNREFLLGCIALYVVMNVVLLILS 436 G+ E L N +LLI + +A + A Y FP+++ LL C Y + VL + Sbjct: 34 GWTEQHNLMNLRLLISFIGVAFSAFACGYDFYAPFPKSKIVLLVCSVSYFICMGVLQLFQ 93 Query: 435 YTKEKDAIIFTHPPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKSV 256 + EKD + G SS++ D Y LS A E S + KS+ Sbjct: 94 WYVEKDCFYEANEVDGK-QTRKWAWSSEIKAHDDKYVLS-AEFKKEGRSGQGKI--IKSI 149 Query: 255 TKWFTKEGVLVEGLFWKDVERL 190 + +G ++ L ++V+ L Sbjct: 150 GAYIDNDGEIMIPLVQREVDDL 171
>SPCS2_DROME (Q9VYY2) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 199 Score = 35.8 bits (81), Expect = 0.10 Identities = 30/149 (20%), Positives = 66/149 (44%), Gaps = 2/149 (1%) Frame = -2 Query: 600 ENTRLGNWKLLIGTVVIAIALLAQF--YPKKFPQNREFLLGCIALYVVMNVVLLILSYTK 427 E L N +L + + +++A++A + FP++R LL + Y + +L + S + Sbjct: 46 EQFGLVNTRLALCALAVSVAIMAHAWDFTHPFPESRPVLLFSVLAYFALLGILTLHSSFR 105 Query: 426 EKDAIIFTHPPAGSFNNTGLVISSKLPRFSDMYNLSIASADPESISAHKPVHFTKSVTKW 247 EK SS + ++ D Y L+++ D ++ + KS + Sbjct: 106 EKGTFAVALQKDKERERL-WEASSDMRKYDDKYLLTLSVRDTKN-GKRREQSSNKSCAAF 163 Query: 246 FTKEGVLVEGLFWKDVERLIDDYNNERKS 160 + G++++ L +V RL + ++K+ Sbjct: 164 IDQNGIVLDNLVANEVNRLFNALAADKKN 192
>CYDB_BACSU (P94365) Cytochrome d ubiquinol oxidase subunit 2 (EC 1.10.3.-)| (Cytochrome d ubiquinol oxidase subunit II) Length = 338 Score = 30.8 bits (68), Expect = 3.4 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Frame = -2 Query: 570 LIGTVVIAIALLAQFYPKKFPQNREFLLGCIALYVVMNVVLLILSYTKEKDAIIFTHPPA 391 ++ V+A A L+ + F + E + +A+ +V+ +L + K+KD F A Sbjct: 203 VVFVAVLAFAALSAYQTDMFTRRGEITIP-LAVLIVICFMLAAVFIRKKKDGWTFGMTGA 261 Query: 390 GSFNNTGLVISSKLPR-----FSDMYNLSIASA 307 G G++ S PR Y+L++A+A Sbjct: 262 GLALTVGMIFISLFPRVMVSSLHSAYDLTVANA 294
>VSG2_TRYEQ (P20950) Variant surface glycoprotein 20 precursor (VSG-20)| Length = 457 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = -2 Query: 318 IASADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVER---LIDDYNNERKSK 157 I D E+ K ++TK++ EG E WK +ER + D E+ +K Sbjct: 300 IGKTDAEAGQESKEPELAAAITKYYGTEGTKFEDQLWKAIERTPAYLGDQKKEQTTK 356
>MSU1_YEAST (P39112) Exoribonuclease II, mitochondrial precursor (EC 3.1.13.1)| (Ribonuclease II) (RNase II) (Mitochondrial biogenesis MSU1 protein) Length = 969 Score = 29.3 bits (64), Expect = 9.8 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +2 Query: 443 ISSTTFITTYSAMQPSRNSRFCGNFFG*NCARSAMAITTVPMRSFQL 583 I+S TF++TY A+ + S G S +++T +P++S L Sbjct: 338 INSPTFVSTYWAIMQQQESNLWGEIHLNTALLSPISVTIIPLKSQHL 384 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,117,577 Number of Sequences: 219361 Number of extensions: 1511997 Number of successful extensions: 3917 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3908 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
