ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
2dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
3dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
4dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
5dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.008

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                            
Query: 90       gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149
                ||||| |||||||||||||| |||||||| |||||||  || || || |||| |||||||
Sbjct: 27341131 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 27341190

                  
Query: 150      tc 151
                ||
Sbjct: 27341191 tc 27341192



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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 90    gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149
             ||||| |||||||||||||| |||||||| |||||||  || || || |||| |||||||
Sbjct: 83958 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 84017

               
Query: 150   tc 151
             ||
Sbjct: 84018 tc 84019



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>dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G24, full
            insert sequence
          Length = 2183

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 90   gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149
            ||||| |||||||||||||| |||||||| |||||||  || || || |||| |||||||
Sbjct: 2009 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 1950

              
Query: 150  tc 151
            ||
Sbjct: 1949 tc 1948



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>dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full
            insert sequence
          Length = 2433

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 90   gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149
            ||||| |||||||||||||| |||||||| |||||||  || || || |||| |||||||
Sbjct: 2259 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 2200

              
Query: 150  tc 151
            ||
Sbjct: 2199 tc 2198



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>dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F12, full
            insert sequence
          Length = 2276

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 90   gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149
            ||||| |||||||||||||| |||||||| ||| |||  || || || |||| |||||||
Sbjct: 2069 gggggaacccggttctcgacagggatctccgtggactcggagagaatcgccctgaactcg 2010

              
Query: 150  tc 151
            ||
Sbjct: 2009 tc 2008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 350,942
Number of Sequences: 3902068
Number of extensions: 350942
Number of successful extensions: 25401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25393
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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