| Clone Name | rbags10n07 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... | 56 | 3e-05 | 2 | dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... | 56 | 3e-05 | 3 | dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 56 | 3e-05 | 4 | dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 56 | 3e-05 | 5 | dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 48 | 0.008 |
|---|
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 3e-05 Identities = 53/62 (85%) Strand = Plus / Plus Query: 90 gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149 ||||| |||||||||||||| |||||||| ||||||| || || || |||| ||||||| Sbjct: 27341131 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 27341190 Query: 150 tc 151 || Sbjct: 27341191 tc 27341192
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 56.0 bits (28), Expect = 3e-05 Identities = 53/62 (85%) Strand = Plus / Plus Query: 90 gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149 ||||| |||||||||||||| |||||||| ||||||| || || || |||| ||||||| Sbjct: 83958 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 84017 Query: 150 tc 151 || Sbjct: 84018 tc 84019
>dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G24, full insert sequence Length = 2183 Score = 56.0 bits (28), Expect = 3e-05 Identities = 53/62 (85%) Strand = Plus / Minus Query: 90 gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149 ||||| |||||||||||||| |||||||| ||||||| || || || |||| ||||||| Sbjct: 2009 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 1950 Query: 150 tc 151 || Sbjct: 1949 tc 1948
>dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full insert sequence Length = 2433 Score = 56.0 bits (28), Expect = 3e-05 Identities = 53/62 (85%) Strand = Plus / Minus Query: 90 gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149 ||||| |||||||||||||| |||||||| ||||||| || || || |||| ||||||| Sbjct: 2259 gggggaacccggttctcgacagggatctccgtgaactcggagagaatcgccctgaactcg 2200 Query: 150 tc 151 || Sbjct: 2199 tc 2198
>dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F12, full insert sequence Length = 2276 Score = 48.1 bits (24), Expect = 0.008 Identities = 52/62 (83%) Strand = Plus / Minus Query: 90 gggggcacccggttctcgacggggatctcggtgaactnngacaggatggcccggaactcg 149 ||||| |||||||||||||| |||||||| ||| ||| || || || |||| ||||||| Sbjct: 2069 gggggaacccggttctcgacagggatctccgtggactcggagagaatcgccctgaactcg 2010 Query: 150 tc 151 || Sbjct: 2009 tc 2008 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 350,942 Number of Sequences: 3902068 Number of extensions: 350942 Number of successful extensions: 25401 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25393 Number of HSP's gapped (non-prelim): 8 length of query: 151 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 130 effective length of database: 17,151,101,840 effective search space: 2229643239200 effective search space used: 2229643239200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)