| Clone Name | rbags11c03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469853.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1133 Score = 347 bits (175), Expect = 3e-92 Identities = 408/485 (84%), Gaps = 3/485 (0%) Strand = Plus / Minus Query: 170 ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229 |||||| |||||| || ||||| ||| ||||||||||||| || || ||||| | ||| Sbjct: 875 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 816 Query: 230 acgagatttgggtctgcgtatgccgcagaatcggaaggatacccttccgcagccatggca 289 | ||||| |||||| | ||||| ||||| |||||||| || || | ||||| || | Sbjct: 815 ataagattcgggtctccatatgctgcagagtcggaagggtatcccttcgcagacagacta 756 Query: 290 gcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctta 349 |||||||||||||||||||||||| ||||||||| || | || |||||||| || | Sbjct: 755 gcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc---a 699 Query: 350 cttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccctt 409 || |||||||| ||||| | |||||||||||||||||||| ||| ||||||||||||| Sbjct: 698 ctaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaacccta 639 Query: 410 agccaaaagcgcaagagcagaaaccaaccagttggcatcaccctcactcgcgctgtaagg 469 |||||||| ||||||||||| |||||||||||||||||||||||||||||| | || ||| Sbjct: 638 agccaaaaacgcaagagcaggaaccaaccagttggcatcaccctcactcgcacagtgagg 579 Query: 470 aatgaaataccactatcagctagctcatcttcatacaagataacctcatcgtagaaaaga 529 |||||||| ||| |||| |||| |||||||||||||| ||||||||| || ||||||||| Sbjct: 578 aatgaaatgccattatcggctaactcatcttcatacaggataacctcgtcatagaaaaga 519 Query: 530 attggttcttttgcagaaagggcaacaaggtcgatccggtcatcagtgtcctcccaacac 589 |||||||||||||| ||||||||||||||||| ||||| || |||| |||||||||||| Sbjct: 518 attggttcttttgctgaaagggcaacaaggtcaatccgatcctcagaatcctcccaacac 459 Query: 590 aaactgctagattcatctaaacttgtttgtatagcgtcttggttcagaaccacagcatca 649 ||| ||| | |||||| ||||||||||| ||| ||| ||||| |||||| ||||||| Sbjct: 458 aaattgcggggttcatccaaacttgtttgaatactatctgggttctgaaccaaagcatca 399 Query: 650 ctccc 654 ||||| Sbjct: 398 ctccc 394
>dbj|AK103511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131F13, full insert sequence Length = 1276 Score = 347 bits (175), Expect = 3e-92 Identities = 408/485 (84%), Gaps = 3/485 (0%) Strand = Plus / Minus Query: 170 ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229 |||||| |||||| || ||||| ||| ||||||||||||| || || ||||| | ||| Sbjct: 1106 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 1047 Query: 230 acgagatttgggtctgcgtatgccgcagaatcggaaggatacccttccgcagccatggca 289 | ||||| |||||| | ||||| ||||| |||||||| || || | ||||| || | Sbjct: 1046 ataagattcgggtctccatatgctgcagagtcggaagggtatcccttcgcagacagacta 987 Query: 290 gcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctta 349 |||||||||||||||||||||||| ||||||||| || | || |||||||| || | Sbjct: 986 gcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc---a 930 Query: 350 cttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccctt 409 || |||||||| ||||| | |||||||||||||||||||| ||| ||||||||||||| Sbjct: 929 ctaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaacccta 870 Query: 410 agccaaaagcgcaagagcagaaaccaaccagttggcatcaccctcactcgcgctgtaagg 469 |||||||| ||||||||||| |||||||||||||||||||||||||||||| | || ||| Sbjct: 869 agccaaaaacgcaagagcaggaaccaaccagttggcatcaccctcactcgcacagtgagg 810 Query: 470 aatgaaataccactatcagctagctcatcttcatacaagataacctcatcgtagaaaaga 529 |||||||| ||| |||| |||| |||||||||||||| ||||||||| || ||||||||| Sbjct: 809 aatgaaatgccattatcggctaactcatcttcatacaggataacctcgtcatagaaaaga 750 Query: 530 attggttcttttgcagaaagggcaacaaggtcgatccggtcatcagtgtcctcccaacac 589 |||||||||||||| ||||||||||||||||| ||||| || |||| |||||||||||| Sbjct: 749 attggttcttttgctgaaagggcaacaaggtcaatccgatcctcagaatcctcccaacac 690 Query: 590 aaactgctagattcatctaaacttgtttgtatagcgtcttggttcagaaccacagcatca 649 ||| ||| | |||||| ||||||||||| ||| ||| ||||| |||||| ||||||| Sbjct: 689 aaattgcggggttcatccaaacttgtttgaatactatctgggttctgaaccaaagcatca 630 Query: 650 ctccc 654 ||||| Sbjct: 629 ctccc 625
>gb|AY105434.1| Zea mays PCO065631 mRNA sequence Length = 1198 Score = 268 bits (135), Expect = 2e-68 Identities = 240/275 (87%) Strand = Plus / Minus Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaaccaacca 439 ||||| ||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| Sbjct: 743 ctcaacctcatcagtacaccatcaactctaagccaaaaacgcaaaagcagaaaccaacca 684 Query: 440 gttggcatcaccctcactcgcgctgtaaggaatgaaataccactatcagctagctcatct 499 |||||||| |||||||||||| | ||||| ||||| |||||| | ||||||| ||||||| Sbjct: 683 gttggcattaccctcactcgcacagtaagaaatgagataccattgtcagctaactcatct 624 Query: 500 tcatacaagataacctcatcgtagaaaagaattggttcttttgcagaaagggcaacaagg 559 ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| | Sbjct: 623 tcatacaagataacctcgtcgtagaaaagaatgggttcttttgctgaaagggcaacaatg 564 Query: 560 tcgatccggtcatcagtgtcctcccaacacaaactgctagattcatctaaacttgtttgt 619 || ||||| |||| ||| ||||||||||||||| ||| || ||||||||||||||||| Sbjct: 563 tcaatccgatcattagtatcctcccaacacaaagtgccgcatccatctaaacttgtttgt 504 Query: 620 atagcgtcttggttcagaaccacagcatcactccc 654 || | | ||||| |||||||||||||||||| Sbjct: 503 ggagtgccagagttcacaaccacagcatcactccc 469 Score = 67.9 bits (34), Expect = 4e-08 Identities = 103/126 (81%) Strand = Plus / Minus Query: 188 agcttctgggtcttctgcatcacgacgggcagcttgcgggcaacgagatttgggtctgcg 247 ||||| |||||||||||| |||| | || ||||| |||||| || || ||||| ||| Sbjct: 935 agcttttgggtcttctgcgtcacaataggaagcttatgggcaataaggttcgggtccgcg 876 Query: 248 tatgccgcagaatcggaaggatacccttccgcagccatggcagcaaatgttgcttccctc 307 || || ||||| || |||||||| |||| ||||| || | ||||||||||||||||||| Sbjct: 875 tacgctgcagagtccgaaggatatcctttcgcagacaaagtagcaaatgttgcttccctc 816 Query: 308 cagcag 313 |||||| Sbjct: 815 cagcag 810
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 512 acctcatcgtagaaaagaattggttcttttgcagaaagggcaacaaggtcgatccggtca 571 ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct: 31153042 acctcgtcatagaaaagaattggttcttttgctgaaagggcaacaaggtcaatccgatcc 31153101 Query: 572 tcagtgtcctcccaacacaaactgctagattcatctaaacttgtttg 618 |||| ||||||||||||||| ||| | |||||| ||||||||||| Sbjct: 31153102 tcagaatcctcccaacacaaattgcggggttcatccaaacttgtttg 31153148 Score = 91.7 bits (46), Expect = 3e-15 Identities = 102/120 (85%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 289 agcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctt 348 ||||||||||||||||||||||||| ||||||||| || | || |||||||| || Sbjct: 31152221 agcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc--- 31152277 Query: 349 acttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccct 408 ||| |||||||| ||||| | |||||||||||||||||||| ||| ||||||||||||| Sbjct: 31152278 actaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaaccct 31152337 Score = 69.9 bits (35), Expect = 1e-08 Identities = 41/43 (95%) Strand = Plus / Plus Query: 412 ccaaaagcgcaagagcagaaaccaaccagttggcatcaccctc 454 |||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 31152696 ccaaaaacgcaagagcaggaaccaaccagttggcatcaccctc 31152738 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 454 cactcgcgctgtaaggaatgaaataccactatcagctagctcatcttcatacaagataac 513 ||||||| | || ||||||||||| ||| |||| |||| |||||||||||||| |||||| Sbjct: 31152840 cactcgcacagtgaggaatgaaatgccattatcggctaactcatcttcatacaggataac 31152899 Query: 514 ct 515 || Sbjct: 31152900 ct 31152901 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 467 aggaatgaaataccactatcagctagctcatcttcatacaagataacct 515 ||||||||||| ||| ||| |||| |||||||||||||| |||||||| Sbjct: 31152933 aggaatgaaatgccattattggctaactcatcttcatacaggataacct 31152981 Score = 44.1 bits (22), Expect = 0.57 Identities = 79/98 (80%) Strand = Plus / Plus Query: 170 ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229 |||||| |||||| || ||||| ||| ||||||||||||| || || ||||| | ||| Sbjct: 31151999 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 31152058 Query: 230 acgagatttgggtctgcgtatgccgcagaatcggaagg 267 | ||||| |||||| | ||||| ||||| |||||||| Sbjct: 31152059 ataagattcgggtctccatatgctgcagagtcggaagg 31152096
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 512 acctcatcgtagaaaagaattggttcttttgcagaaagggcaacaaggtcgatccggtca 571 ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct: 73683 acctcgtcatagaaaagaattggttcttttgctgaaagggcaacaaggtcaatccgatcc 73742 Query: 572 tcagtgtcctcccaacacaaactgctagattcatctaaacttgtttg 618 |||| ||||||||||||||| ||| | |||||| ||||||||||| Sbjct: 73743 tcagaatcctcccaacacaaattgcggggttcatccaaacttgtttg 73789 Score = 91.7 bits (46), Expect = 3e-15 Identities = 102/120 (85%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 289 agcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctt 348 ||||||||||||||||||||||||| ||||||||| || | || |||||||| || Sbjct: 72862 agcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc--- 72918 Query: 349 acttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccct 408 ||| |||||||| ||||| | |||||||||||||||||||| ||| ||||||||||||| Sbjct: 72919 actaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaaccct 72978 Score = 69.9 bits (35), Expect = 1e-08 Identities = 41/43 (95%) Strand = Plus / Plus Query: 412 ccaaaagcgcaagagcagaaaccaaccagttggcatcaccctc 454 |||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 73337 ccaaaaacgcaagagcaggaaccaaccagttggcatcaccctc 73379 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 454 cactcgcgctgtaaggaatgaaataccactatcagctagctcatcttcatacaagataac 513 ||||||| | || ||||||||||| ||| |||| |||| |||||||||||||| |||||| Sbjct: 73481 cactcgcacagtgaggaatgaaatgccattatcggctaactcatcttcatacaggataac 73540 Query: 514 ct 515 || Sbjct: 73541 ct 73542 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 467 aggaatgaaataccactatcagctagctcatcttcatacaagataacct 515 ||||||||||| ||| ||| |||| |||||||||||||| |||||||| Sbjct: 73574 aggaatgaaatgccattattggctaactcatcttcatacaggataacct 73622 Score = 44.1 bits (22), Expect = 0.57 Identities = 79/98 (80%) Strand = Plus / Plus Query: 170 ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229 |||||| |||||| || ||||| ||| ||||||||||||| || || ||||| | ||| Sbjct: 72640 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 72699 Query: 230 acgagatttgggtctgcgtatgccgcagaatcggaagg 267 | ||||| |||||| | ||||| ||||| |||||||| Sbjct: 72700 ataagattcgggtctccatatgctgcagagtcggaagg 72737
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 512 acctcatcgtagaaaagaattggttcttttgcagaaagggcaacaaggtcgatccggtca 571 ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct: 31243565 acctcgtcatagaaaagaattggttcttttgctgaaagggcaacaaggtcaatccgatcc 31243624 Query: 572 tcagtgtcctcccaacacaaactgctagattcatctaaacttgtttg 618 |||| ||||||||||||||| ||| | |||||| ||||||||||| Sbjct: 31243625 tcagaatcctcccaacacaaattgcggggttcatccaaacttgtttg 31243671 Score = 91.7 bits (46), Expect = 3e-15 Identities = 102/120 (85%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 289 agcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctt 348 ||||||||||||||||||||||||| ||||||||| || | || |||||||| || Sbjct: 31242744 agcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc--- 31242800 Query: 349 acttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccct 408 ||| |||||||| ||||| | |||||||||||||||||||| ||| ||||||||||||| Sbjct: 31242801 actaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaaccct 31242860 Score = 69.9 bits (35), Expect = 1e-08 Identities = 41/43 (95%) Strand = Plus / Plus Query: 412 ccaaaagcgcaagagcagaaaccaaccagttggcatcaccctc 454 |||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 31243219 ccaaaaacgcaagagcaggaaccaaccagttggcatcaccctc 31243261 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 454 cactcgcgctgtaaggaatgaaataccactatcagctagctcatcttcatacaagataac 513 ||||||| | || ||||||||||| ||| |||| |||| |||||||||||||| |||||| Sbjct: 31243363 cactcgcacagtgaggaatgaaatgccattatcggctaactcatcttcatacaggataac 31243422 Query: 514 ct 515 || Sbjct: 31243423 ct 31243424 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 467 aggaatgaaataccactatcagctagctcatcttcatacaagataacct 515 ||||||||||| ||| ||| |||| |||||||||||||| |||||||| Sbjct: 31243456 aggaatgaaatgccattattggctaactcatcttcatacaggataacct 31243504 Score = 44.1 bits (22), Expect = 0.57 Identities = 79/98 (80%) Strand = Plus / Plus Query: 170 ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229 |||||| |||||| || ||||| ||| ||||||||||||| || || ||||| | ||| Sbjct: 31242522 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 31242581 Query: 230 acgagatttgggtctgcgtatgccgcagaatcggaagg 267 | ||||| |||||| | ||||| ||||| |||||||| Sbjct: 31242582 ataagattcgggtctccatatgctgcagagtcggaagg 31242619
>gb|BT012082.1| Arabidopsis thaliana At4g34270 mRNA sequence Length = 693 Score = 50.1 bits (25), Expect = 0.009 Identities = 127/161 (78%) Strand = Plus / Minus Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaaccaacca 439 ||||||||||| || |||||||||| || |||||||| |||||||| || ||||| Sbjct: 485 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaaccatgag 426 Query: 440 gttggcatcaccctcactcgcgctgtaaggaatgaaataccactatcagctagctcatct 499 ||||||| ||||||||| | | || || | ||| | ||| | ||||| || |||||| Sbjct: 425 cttggcatgaccctcactttcacagtcagaagtgacactccattgtcagccagttcatct 366 Query: 500 tcatacaagataacctcatcgtagaaaagaattggttcttt 540 |||||||| | |||||||| ||||| ||||| |||||||| Sbjct: 365 tcatacaaaactacctcatcatagaagagaataggttcttt 325
>ref|NM_119592.3| Arabidopsis thaliana unknown protein AT4G34270 mRNA, complete cds Length = 1220 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435 ||||||||||| || |||||||||| || |||||||| |||||||| || ||||| Sbjct: 718 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 663 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540 ||||| || |||||||||||||| | |||||||| ||||| ||||| |||||||| Sbjct: 613 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 558
>gb|AY091389.1| Arabidopsis thaliana unknown protein (At4g34270) mRNA, complete cds Length = 904 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435 ||||||||||| || |||||||||| || |||||||| |||||||| || ||||| Sbjct: 665 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 610 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540 ||||| || |||||||||||||| | |||||||| ||||| ||||| |||||||| Sbjct: 560 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 505
>gb|AY074349.1| Arabidopsis thaliana unknown protein (At4g34270) mRNA, complete cds Length = 1092 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435 ||||||||||| || |||||||||| || |||||||| |||||||| || ||||| Sbjct: 718 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 663 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540 ||||| || |||||||||||||| | |||||||| ||||| ||||| |||||||| Sbjct: 613 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 558
>emb|BX828124.1|CNS0A3YV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH55ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 943 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435 ||||||||||| || |||||||||| || |||||||| |||||||| || ||||| Sbjct: 672 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 617 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540 ||||| || |||||||||||||| | |||||||| ||||| ||||| |||||||| Sbjct: 567 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 512
>gb|AC154188.2| Mus musculus BAC clone RP24-455C11 from chromosome 16, complete sequence Length = 177978 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 cttgagcttctgggtcttctgcatc 208 ||||||||||||||||| ||||||| Sbjct: 156580 cttgagcttctgggtctcctgcatc 156556 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 cttgagcttctgggtcttctgcatc 208 ||||||||||||||||| ||||||| Sbjct: 87828 cttgagcttctgggtctcctgcatc 87804
>gb|AC007681.3| Homo sapiens BAC clone RP11-355F16 from 2, complete sequence Length = 147903 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gcatgatgattgctgaaactg 21 ||||||||||||||||||||| Sbjct: 40795 gcatgatgattgctgaaactg 40815
>emb|CT033776.8| Mouse DNA sequence from clone RP24-83D14 on chromosome 16, complete sequence Length = 224534 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 cttgagcttctgggtcttctgcatc 208 ||||||||||||||||| ||||||| Sbjct: 32343 cttgagcttctgggtctcctgcatc 32319
>gb|AC102749.10| Mus musculus chromosome 5, clone RP24-478I4, complete sequence Length = 173437 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 tcatacaagataacctcatc 519 |||||||||||||||||||| Sbjct: 94718 tcatacaagataacctcatc 94737
>gb|BT020754.1| Bos taurus basic helix-loop-helix domain containing, class B, 2 (BHLHB2), mRNA, complete cds Length = 2918 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 333 gctttgcttcctccttacttccaaaagaacaa 364 ||||| |||||||| ||||||||||| ||||| Sbjct: 1491 gctttccttcctccctacttccaaaaaaacaa 1522
>gb|AC151473.3| Mus musculus BAC clone RP24-492O15 from chromosome 17, complete sequence Length = 128797 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 acttccaaaagaacaatata 368 |||||||||||||||||||| Sbjct: 34202 acttccaaaagaacaatata 34183
>emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chromosome 6 Contains part of gene KIAA1733 and a CpG island, complete sequence Length = 164000 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 509 ataacctcatcgtagaaaagaatt 532 ||||||||||| |||||||||||| Sbjct: 60643 ataacctcatcatagaaaagaatt 60666
>emb|AL441883.11| Human DNA sequence from clone RP1-223E5 on chromosome 6 Contains the SIRT5 gene for sirtuin silent mating type information regulation 2 homolog 5 (S. cerevisiae), the gene for retinoic acid repressible protein (RARG-1), the 3' end of the RANBP9 gene for RAN binding protein 9 (RanBPM) and two CpG islands, complete sequence Length = 63952 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 accggctttgcttcctcctt 348 |||||||||||||||||||| Sbjct: 5198 accggctttgcttcctcctt 5179
>emb|AL732390.10| Mouse DNA sequence from clone RP23-413O19 on chromosome 11 Contains a laminin receptor 1 (ribosomal protein SA) (Lamr1) pseudogene, a novel gene, the 3' end of the Fgf18 gene for fibroblast growth factor 18 and a CpG island, complete sequence Length = 195612 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gcttcaagataagcagatct 100 |||||||||||||||||||| Sbjct: 114584 gcttcaagataagcagatct 114565
>emb|BX640408.8| Zebrafish DNA sequence from clone CH211-262L3 in linkage group 2, complete sequence Length = 123471 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 aaaccaaccagttggcatca 449 |||||||||||||||||||| Sbjct: 103294 aaaccaaccagttggcatca 103275
>gb|AC022994.9| Homo sapiens chromosome 11, clone RP11-735P2, complete sequence Length = 167760 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 agcttctgggtcttctgcat 207 |||||||||||||||||||| Sbjct: 53149 agcttctgggtcttctgcat 53168
>gb|AC160055.2| Pan troglodytes BAC clone CH251-555N15 from chromosome unknown, complete sequence Length = 227737 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tctacaacacatgcaaacag 117 |||||||||||||||||||| Sbjct: 75314 tctacaacacatgcaaacag 75295
>gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, complete sequence Length = 184635 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 cactatcagctagctcatct 499 |||||||||||||||||||| Sbjct: 124325 cactatcagctagctcatct 124344
>gb|AC008892.7| Homo sapiens chromosome 5 clone CTD-2227I18, complete sequence Length = 113628 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 gctttgcttcctccttactt 352 |||||||||||||||||||| Sbjct: 70763 gctttgcttcctccttactt 70744
>ref|NM_001024929.1| Bos taurus differentiated embryo chondrocyte expressed gene 1 (BHLHB2), mRNA Length = 2918 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 333 gctttgcttcctccttacttccaaaagaacaa 364 ||||| |||||||| ||||||||||| ||||| Sbjct: 1491 gctttccttcctccctacttccaaaaaaacaa 1522
>emb|BX571975.7| Zebrafish DNA sequence from clone DKEY-77F3 in linkage group 18, complete sequence Length = 187272 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 agaaaagaattggttctttt 541 |||||||||||||||||||| Sbjct: 142634 agaaaagaattggttctttt 142615
>emb|BX548070.5| Zebrafish DNA sequence from clone CH211-245P7 in linkage group 18, complete sequence Length = 173372 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 agaaaagaattggttctttt 541 |||||||||||||||||||| Sbjct: 143493 agaaaagaattggttctttt 143474
>gb|AY107480.1| Zea mays PCO126634 mRNA sequence Length = 1070 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 gagcttctgggtcttctgcatcac 210 |||||||||| ||||||||||||| Sbjct: 853 gagcttctggatcttctgcatcac 830
>emb|CT571266.4| Mouse DNA sequence from clone RP23-255L13 on chromosome 13, complete sequence Length = 176074 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 agaaagggcaacaaggtcga 563 |||||||||||||||||||| Sbjct: 142683 agaaagggcaacaaggtcga 142664
>gb|AC163767.4| Pan troglodytes BAC clone CH251-162B13 from chromosome unknown, complete sequence Length = 193117 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tctacaacacatgcaaacag 117 |||||||||||||||||||| Sbjct: 69997 tctacaacacatgcaaacag 70016
>dbj|AP003070.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-4N9, complete sequence Length = 163905 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tctacaacacatgcaaacag 117 |||||||||||||||||||| Sbjct: 84841 tctacaacacatgcaaacag 84860 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,454,807 Number of Sequences: 3902068 Number of extensions: 5454807 Number of successful extensions: 104153 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104016 Number of HSP's gapped (non-prelim): 129 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)