ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_469853.1| Oryza sativa (japonica cultivar-group), mRNA 347 3e-92
2dbj|AK103511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
3gb|AY105434.1| Zea mays PCO065631 mRNA sequence 268 2e-68
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
5gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 109 1e-20
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7gb|BT012082.1| Arabidopsis thaliana At4g34270 mRNA sequence 50 0.009
8ref|NM_119592.3| Arabidopsis thaliana unknown protein AT4G34270 ... 48 0.037
9gb|AY091389.1| Arabidopsis thaliana unknown protein (At4g34270) ... 48 0.037
10gb|AY074349.1| Arabidopsis thaliana unknown protein (At4g34270) ... 48 0.037
11emb|BX828124.1|CNS0A3YV Arabidopsis thaliana Full-length cDNA Co... 48 0.037
12gb|AC154188.2| Mus musculus BAC clone RP24-455C11 from chromosom... 42 2.3
13gb|AC007681.3| Homo sapiens BAC clone RP11-355F16 from 2, comple... 42 2.3
14emb|CT033776.8| Mouse DNA sequence from clone RP24-83D14 on chro... 42 2.3
15gb|AC102749.10| Mus musculus chromosome 5, clone RP24-478I4, com... 40 8.9
16gb|BT020754.1| Bos taurus basic helix-loop-helix domain containi... 40 8.9
17gb|AC151473.3| Mus musculus BAC clone RP24-492O15 from chromosom... 40 8.9
18emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chr... 40 8.9
19emb|AL441883.11| Human DNA sequence from clone RP1-223E5 on chro... 40 8.9
20emb|AL732390.10| Mouse DNA sequence from clone RP23-413O19 on ch... 40 8.9
21emb|BX640408.8| Zebrafish DNA sequence from clone CH211-262L3 in... 40 8.9
22gb|AC022994.9| Homo sapiens chromosome 11, clone RP11-735P2, com... 40 8.9
23gb|AC160055.2| Pan troglodytes BAC clone CH251-555N15 from chrom... 40 8.9
24gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, comp... 40 8.9
25gb|AC008892.7| Homo sapiens chromosome 5 clone CTD-2227I18, comp... 40 8.9
26ref|NM_001024929.1| Bos taurus differentiated embryo chondrocyte... 40 8.9
27emb|BX571975.7| Zebrafish DNA sequence from clone DKEY-77F3 in l... 40 8.9
28emb|BX548070.5| Zebrafish DNA sequence from clone CH211-245P7 in... 40 8.9
29gb|AY107480.1| Zea mays PCO126634 mRNA sequence 40 8.9
30emb|CT571266.4| Mouse DNA sequence from clone RP23-255L13 on chr... 40 8.9
31gb|AC163767.4| Pan troglodytes BAC clone CH251-162B13 from chrom... 40 8.9
32dbj|AP003070.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.9

>ref|XM_469853.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1133

 Score =  347 bits (175), Expect = 3e-92
 Identities = 408/485 (84%), Gaps = 3/485 (0%)
 Strand = Plus / Minus

                                                                       
Query: 170 ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229
           |||||| ||||||  || ||||| ||| ||||||||||||| || || |||||  | |||
Sbjct: 875 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 816

                                                                       
Query: 230 acgagatttgggtctgcgtatgccgcagaatcggaaggatacccttccgcagccatggca 289
           |  ||||| |||||| | ||||| ||||| |||||||| || || | ||||| ||    |
Sbjct: 815 ataagattcgggtctccatatgctgcagagtcggaagggtatcccttcgcagacagacta 756

                                                                       
Query: 290 gcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctta 349
           ||||||||||||||||||||||||  ||||||||| || |  || |||||||| ||   |
Sbjct: 755 gcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc---a 699

                                                                       
Query: 350 cttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccctt 409
           || |||||||| ||||| |  |||||||||||||||||||| ||| ||||||||||||| 
Sbjct: 698 ctaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaacccta 639

                                                                       
Query: 410 agccaaaagcgcaagagcagaaaccaaccagttggcatcaccctcactcgcgctgtaagg 469
           |||||||| ||||||||||| |||||||||||||||||||||||||||||| | || |||
Sbjct: 638 agccaaaaacgcaagagcaggaaccaaccagttggcatcaccctcactcgcacagtgagg 579

                                                                       
Query: 470 aatgaaataccactatcagctagctcatcttcatacaagataacctcatcgtagaaaaga 529
           |||||||| ||| |||| |||| |||||||||||||| ||||||||| || |||||||||
Sbjct: 578 aatgaaatgccattatcggctaactcatcttcatacaggataacctcgtcatagaaaaga 519

                                                                       
Query: 530 attggttcttttgcagaaagggcaacaaggtcgatccggtcatcagtgtcctcccaacac 589
           |||||||||||||| ||||||||||||||||| ||||| || ||||  ||||||||||||
Sbjct: 518 attggttcttttgctgaaagggcaacaaggtcaatccgatcctcagaatcctcccaacac 459

                                                                       
Query: 590 aaactgctagattcatctaaacttgtttgtatagcgtcttggttcagaaccacagcatca 649
           ||| |||  | |||||| ||||||||||| |||   ||| ||||| |||||| |||||||
Sbjct: 458 aaattgcggggttcatccaaacttgtttgaatactatctgggttctgaaccaaagcatca 399

                
Query: 650 ctccc 654
           |||||
Sbjct: 398 ctccc 394



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>dbj|AK103511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131F13, full
            insert sequence
          Length = 1276

 Score =  347 bits (175), Expect = 3e-92
 Identities = 408/485 (84%), Gaps = 3/485 (0%)
 Strand = Plus / Minus

                                                                        
Query: 170  ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229
            |||||| ||||||  || ||||| ||| ||||||||||||| || || |||||  | |||
Sbjct: 1106 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 1047

                                                                        
Query: 230  acgagatttgggtctgcgtatgccgcagaatcggaaggatacccttccgcagccatggca 289
            |  ||||| |||||| | ||||| ||||| |||||||| || || | ||||| ||    |
Sbjct: 1046 ataagattcgggtctccatatgctgcagagtcggaagggtatcccttcgcagacagacta 987

                                                                        
Query: 290  gcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctta 349
            ||||||||||||||||||||||||  ||||||||| || |  || |||||||| ||   |
Sbjct: 986  gcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc---a 930

                                                                        
Query: 350  cttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccctt 409
            || |||||||| ||||| |  |||||||||||||||||||| ||| ||||||||||||| 
Sbjct: 929  ctaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaacccta 870

                                                                        
Query: 410  agccaaaagcgcaagagcagaaaccaaccagttggcatcaccctcactcgcgctgtaagg 469
            |||||||| ||||||||||| |||||||||||||||||||||||||||||| | || |||
Sbjct: 869  agccaaaaacgcaagagcaggaaccaaccagttggcatcaccctcactcgcacagtgagg 810

                                                                        
Query: 470  aatgaaataccactatcagctagctcatcttcatacaagataacctcatcgtagaaaaga 529
            |||||||| ||| |||| |||| |||||||||||||| ||||||||| || |||||||||
Sbjct: 809  aatgaaatgccattatcggctaactcatcttcatacaggataacctcgtcatagaaaaga 750

                                                                        
Query: 530  attggttcttttgcagaaagggcaacaaggtcgatccggtcatcagtgtcctcccaacac 589
            |||||||||||||| ||||||||||||||||| ||||| || ||||  ||||||||||||
Sbjct: 749  attggttcttttgctgaaagggcaacaaggtcaatccgatcctcagaatcctcccaacac 690

                                                                        
Query: 590  aaactgctagattcatctaaacttgtttgtatagcgtcttggttcagaaccacagcatca 649
            ||| |||  | |||||| ||||||||||| |||   ||| ||||| |||||| |||||||
Sbjct: 689  aaattgcggggttcatccaaacttgtttgaatactatctgggttctgaaccaaagcatca 630

                 
Query: 650  ctccc 654
            |||||
Sbjct: 629  ctccc 625



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>gb|AY105434.1| Zea mays PCO065631 mRNA sequence
          Length = 1198

 Score =  268 bits (135), Expect = 2e-68
 Identities = 240/275 (87%)
 Strand = Plus / Minus

                                                                       
Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaaccaacca 439
           ||||| ||||||||| |||||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 743 ctcaacctcatcagtacaccatcaactctaagccaaaaacgcaaaagcagaaaccaacca 684

                                                                       
Query: 440 gttggcatcaccctcactcgcgctgtaaggaatgaaataccactatcagctagctcatct 499
           |||||||| |||||||||||| | ||||| ||||| |||||| | ||||||| |||||||
Sbjct: 683 gttggcattaccctcactcgcacagtaagaaatgagataccattgtcagctaactcatct 624

                                                                       
Query: 500 tcatacaagataacctcatcgtagaaaagaattggttcttttgcagaaagggcaacaagg 559
           ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 623 tcatacaagataacctcgtcgtagaaaagaatgggttcttttgctgaaagggcaacaatg 564

                                                                       
Query: 560 tcgatccggtcatcagtgtcctcccaacacaaactgctagattcatctaaacttgtttgt 619
           || ||||| |||| ||| ||||||||||||||| |||   || |||||||||||||||||
Sbjct: 563 tcaatccgatcattagtatcctcccaacacaaagtgccgcatccatctaaacttgtttgt 504

                                              
Query: 620 atagcgtcttggttcagaaccacagcatcactccc 654
             || | |   ||||| ||||||||||||||||||
Sbjct: 503 ggagtgccagagttcacaaccacagcatcactccc 469



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 103/126 (81%)
 Strand = Plus / Minus

                                                                       
Query: 188 agcttctgggtcttctgcatcacgacgggcagcttgcgggcaacgagatttgggtctgcg 247
           ||||| |||||||||||| |||| |  || |||||  ||||||  || || ||||| |||
Sbjct: 935 agcttttgggtcttctgcgtcacaataggaagcttatgggcaataaggttcgggtccgcg 876

                                                                       
Query: 248 tatgccgcagaatcggaaggatacccttccgcagccatggcagcaaatgttgcttccctc 307
           || || ||||| || |||||||| |||| ||||| ||  | |||||||||||||||||||
Sbjct: 875 tacgctgcagagtccgaaggatatcctttcgcagacaaagtagcaaatgttgcttccctc 816

                 
Query: 308 cagcag 313
           ||||||
Sbjct: 815 cagcag 810



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 512      acctcatcgtagaaaagaattggttcttttgcagaaagggcaacaaggtcgatccggtca 571
                ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || 
Sbjct: 31153042 acctcgtcatagaaaagaattggttcttttgctgaaagggcaacaaggtcaatccgatcc 31153101

                                                               
Query: 572      tcagtgtcctcccaacacaaactgctagattcatctaaacttgtttg 618
                ||||  ||||||||||||||| |||  | |||||| |||||||||||
Sbjct: 31153102 tcagaatcctcccaacacaaattgcggggttcatccaaacttgtttg 31153148



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 102/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                            
Query: 289      agcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctt 348
                |||||||||||||||||||||||||  ||||||||| || |  || |||||||| ||   
Sbjct: 31152221 agcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc--- 31152277

                                                                            
Query: 349      acttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccct 408
                ||| |||||||| ||||| |  |||||||||||||||||||| ||| |||||||||||||
Sbjct: 31152278 actaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaaccct 31152337



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                           
Query: 412      ccaaaagcgcaagagcagaaaccaaccagttggcatcaccctc 454
                |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 31152696 ccaaaaacgcaagagcaggaaccaaccagttggcatcaccctc 31152738



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                            
Query: 454      cactcgcgctgtaaggaatgaaataccactatcagctagctcatcttcatacaagataac 513
                ||||||| | || ||||||||||| ||| |||| |||| |||||||||||||| ||||||
Sbjct: 31152840 cactcgcacagtgaggaatgaaatgccattatcggctaactcatcttcatacaggataac 31152899

                  
Query: 514      ct 515
                ||
Sbjct: 31152900 ct 31152901



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 467      aggaatgaaataccactatcagctagctcatcttcatacaagataacct 515
                ||||||||||| ||| |||  |||| |||||||||||||| ||||||||
Sbjct: 31152933 aggaatgaaatgccattattggctaactcatcttcatacaggataacct 31152981



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                            
Query: 170      ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229
                |||||| ||||||  || ||||| ||| ||||||||||||| || || |||||  | |||
Sbjct: 31151999 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 31152058

                                                      
Query: 230      acgagatttgggtctgcgtatgccgcagaatcggaagg 267
                |  ||||| |||||| | ||||| ||||| ||||||||
Sbjct: 31152059 ataagattcgggtctccatatgctgcagagtcggaagg 31152096



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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                         
Query: 512   acctcatcgtagaaaagaattggttcttttgcagaaagggcaacaaggtcgatccggtca 571
             ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || 
Sbjct: 73683 acctcgtcatagaaaagaattggttcttttgctgaaagggcaacaaggtcaatccgatcc 73742

                                                            
Query: 572   tcagtgtcctcccaacacaaactgctagattcatctaaacttgtttg 618
             ||||  ||||||||||||||| |||  | |||||| |||||||||||
Sbjct: 73743 tcagaatcctcccaacacaaattgcggggttcatccaaacttgtttg 73789



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 102/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                         
Query: 289   agcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctt 348
             |||||||||||||||||||||||||  ||||||||| || |  || |||||||| ||   
Sbjct: 72862 agcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc--- 72918

                                                                         
Query: 349   acttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccct 408
             ||| |||||||| ||||| |  |||||||||||||||||||| ||| |||||||||||||
Sbjct: 72919 actaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaaccct 72978



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                        
Query: 412   ccaaaagcgcaagagcagaaaccaaccagttggcatcaccctc 454
             |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 73337 ccaaaaacgcaagagcaggaaccaaccagttggcatcaccctc 73379



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 454   cactcgcgctgtaaggaatgaaataccactatcagctagctcatcttcatacaagataac 513
             ||||||| | || ||||||||||| ||| |||| |||| |||||||||||||| ||||||
Sbjct: 73481 cactcgcacagtgaggaatgaaatgccattatcggctaactcatcttcatacaggataac 73540

               
Query: 514   ct 515
             ||
Sbjct: 73541 ct 73542



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 467   aggaatgaaataccactatcagctagctcatcttcatacaagataacct 515
             ||||||||||| ||| |||  |||| |||||||||||||| ||||||||
Sbjct: 73574 aggaatgaaatgccattattggctaactcatcttcatacaggataacct 73622



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                         
Query: 170   ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229
             |||||| ||||||  || ||||| ||| ||||||||||||| || || |||||  | |||
Sbjct: 72640 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 72699

                                                   
Query: 230   acgagatttgggtctgcgtatgccgcagaatcggaagg 267
             |  ||||| |||||| | ||||| ||||| ||||||||
Sbjct: 72700 ataagattcgggtctccatatgctgcagagtcggaagg 72737



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 512      acctcatcgtagaaaagaattggttcttttgcagaaagggcaacaaggtcgatccggtca 571
                ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| || 
Sbjct: 31243565 acctcgtcatagaaaagaattggttcttttgctgaaagggcaacaaggtcaatccgatcc 31243624

                                                               
Query: 572      tcagtgtcctcccaacacaaactgctagattcatctaaacttgtttg 618
                ||||  ||||||||||||||| |||  | |||||| |||||||||||
Sbjct: 31243625 tcagaatcctcccaacacaaattgcggggttcatccaaacttgtttg 31243671



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 102/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                            
Query: 289      agcaaatgttgcttccctccagcagagttcacgcagcaccaccggctttgcttcctcctt 348
                |||||||||||||||||||||||||  ||||||||| || |  || |||||||| ||   
Sbjct: 31242744 agcaaatgttgcttccctccagcagcattcacgcagtacaatgggttttgcttcgtc--- 31242800

                                                                            
Query: 349      acttccaaaagaacaatataaacgggtatccctcaatctcatcagtgcaccatcaaccct 408
                ||| |||||||| ||||| |  |||||||||||||||||||| ||| |||||||||||||
Sbjct: 31242801 actaccaaaagagcaatacacccgggtatccctcaatctcataagtacaccatcaaccct 31242860



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                           
Query: 412      ccaaaagcgcaagagcagaaaccaaccagttggcatcaccctc 454
                |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 31243219 ccaaaaacgcaagagcaggaaccaaccagttggcatcaccctc 31243261



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                            
Query: 454      cactcgcgctgtaaggaatgaaataccactatcagctagctcatcttcatacaagataac 513
                ||||||| | || ||||||||||| ||| |||| |||| |||||||||||||| ||||||
Sbjct: 31243363 cactcgcacagtgaggaatgaaatgccattatcggctaactcatcttcatacaggataac 31243422

                  
Query: 514      ct 515
                ||
Sbjct: 31243423 ct 31243424



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 467      aggaatgaaataccactatcagctagctcatcttcatacaagataacct 515
                ||||||||||| ||| |||  |||| |||||||||||||| ||||||||
Sbjct: 31243456 aggaatgaaatgccattattggctaactcatcttcatacaggataacct 31243504



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                            
Query: 170      ggttaactgggtatcttgagcttctgggtcttctgcatcacgacgggcagcttgcgggca 229
                |||||| ||||||  || ||||| ||| ||||||||||||| || || |||||  | |||
Sbjct: 31242522 ggttaattgggtaatttcagcttttggatcttctgcatcacaactggaagcttatgagca 31242581

                                                      
Query: 230      acgagatttgggtctgcgtatgccgcagaatcggaagg 267
                |  ||||| |||||| | ||||| ||||| ||||||||
Sbjct: 31242582 ataagattcgggtctccatatgctgcagagtcggaagg 31242619



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>gb|BT012082.1| Arabidopsis thaliana At4g34270 mRNA sequence
          Length = 693

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 127/161 (78%)
 Strand = Plus / Minus

                                                                       
Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaaccaacca 439
           ||||||||||| ||  |||||||||| || |||||||| |||||||| || |||||    
Sbjct: 485 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaaccatgag 426

                                                                       
Query: 440 gttggcatcaccctcactcgcgctgtaaggaatgaaataccactatcagctagctcatct 499
            ||||||| |||||||||  | | || || | ||| |  ||| | ||||| || ||||||
Sbjct: 425 cttggcatgaccctcactttcacagtcagaagtgacactccattgtcagccagttcatct 366

                                                    
Query: 500 tcatacaagataacctcatcgtagaaaagaattggttcttt 540
           |||||||| |  |||||||| ||||| ||||| ||||||||
Sbjct: 365 tcatacaaaactacctcatcatagaagagaataggttcttt 325



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>ref|NM_119592.3| Arabidopsis thaliana unknown protein AT4G34270 mRNA, complete cds
          Length = 1220

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435
           ||||||||||| ||  |||||||||| || |||||||| |||||||| || |||||
Sbjct: 718 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 663



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540
           ||||| || |||||||||||||| |  |||||||| ||||| ||||| ||||||||
Sbjct: 613 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 558



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>gb|AY091389.1| Arabidopsis thaliana unknown protein (At4g34270) mRNA, complete cds
          Length = 904

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435
           ||||||||||| ||  |||||||||| || |||||||| |||||||| || |||||
Sbjct: 665 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 610



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540
           ||||| || |||||||||||||| |  |||||||| ||||| ||||| ||||||||
Sbjct: 560 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 505



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>gb|AY074349.1| Arabidopsis thaliana unknown protein (At4g34270) mRNA, complete cds
          Length = 1092

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435
           ||||||||||| ||  |||||||||| || |||||||| |||||||| || |||||
Sbjct: 718 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 663



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540
           ||||| || |||||||||||||| |  |||||||| ||||| ||||| ||||||||
Sbjct: 613 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 558



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>emb|BX828124.1|CNS0A3YV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH55ZE03 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 943

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 380 ctcaatctcatcagtgcaccatcaacccttagccaaaagcgcaagagcagaaacca 435
           ||||||||||| ||  |||||||||| || |||||||| |||||||| || |||||
Sbjct: 672 ctcaatctcataagcacaccatcaactctcagccaaaatcgcaagaggaggaacca 617



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 485 tcagctagctcatcttcatacaagataacctcatcgtagaaaagaattggttcttt 540
           ||||| || |||||||||||||| |  |||||||| ||||| ||||| ||||||||
Sbjct: 567 tcagccagttcatcttcatacaaaactacctcatcatagaagagaataggttcttt 512



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>gb|AC154188.2| Mus musculus BAC clone RP24-455C11 from chromosome 16, complete sequence
          Length = 177978

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 184    cttgagcttctgggtcttctgcatc 208
              ||||||||||||||||| |||||||
Sbjct: 156580 cttgagcttctgggtctcctgcatc 156556



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 184   cttgagcttctgggtcttctgcatc 208
             ||||||||||||||||| |||||||
Sbjct: 87828 cttgagcttctgggtctcctgcatc 87804



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>gb|AC007681.3| Homo sapiens BAC clone RP11-355F16 from 2, complete sequence
          Length = 147903

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     gcatgatgattgctgaaactg 21
             |||||||||||||||||||||
Sbjct: 40795 gcatgatgattgctgaaactg 40815



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>emb|CT033776.8| Mouse DNA sequence from clone RP24-83D14 on chromosome 16, complete
             sequence
          Length = 224534

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 184   cttgagcttctgggtcttctgcatc 208
             ||||||||||||||||| |||||||
Sbjct: 32343 cttgagcttctgggtctcctgcatc 32319



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>gb|AC102749.10| Mus musculus chromosome 5, clone RP24-478I4, complete sequence
          Length = 173437

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 500   tcatacaagataacctcatc 519
             ||||||||||||||||||||
Sbjct: 94718 tcatacaagataacctcatc 94737



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>gb|BT020754.1| Bos taurus basic helix-loop-helix domain containing, class B, 2
            (BHLHB2), mRNA, complete cds
          Length = 2918

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 333  gctttgcttcctccttacttccaaaagaacaa 364
            ||||| |||||||| ||||||||||| |||||
Sbjct: 1491 gctttccttcctccctacttccaaaaaaacaa 1522



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>gb|AC151473.3| Mus musculus BAC clone RP24-492O15 from chromosome 17, complete
             sequence
          Length = 128797

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   acttccaaaagaacaatata 368
             ||||||||||||||||||||
Sbjct: 34202 acttccaaaagaacaatata 34183



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>emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chromosome 6 Contains part
             of gene KIAA1733 and a CpG island, complete sequence
          Length = 164000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 509   ataacctcatcgtagaaaagaatt 532
             ||||||||||| ||||||||||||
Sbjct: 60643 ataacctcatcatagaaaagaatt 60666



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>emb|AL441883.11| Human DNA sequence from clone RP1-223E5 on chromosome 6 Contains the
            SIRT5 gene for sirtuin silent mating type information
            regulation 2 homolog 5 (S. cerevisiae), the gene for
            retinoic acid repressible protein (RARG-1), the 3' end of
            the RANBP9 gene for RAN binding protein 9 (RanBPM) and
            two CpG islands, complete sequence
          Length = 63952

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  accggctttgcttcctcctt 348
            ||||||||||||||||||||
Sbjct: 5198 accggctttgcttcctcctt 5179



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>emb|AL732390.10| Mouse DNA sequence from clone RP23-413O19 on chromosome 11 Contains a
              laminin receptor 1 (ribosomal protein SA) (Lamr1)
              pseudogene, a novel gene, the 3' end of the Fgf18 gene for
              fibroblast growth factor 18 and a CpG island, complete
              sequence
          Length = 195612

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     gcttcaagataagcagatct 100
              ||||||||||||||||||||
Sbjct: 114584 gcttcaagataagcagatct 114565



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>emb|BX640408.8| Zebrafish DNA sequence from clone CH211-262L3 in linkage group 2,
              complete sequence
          Length = 123471

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    aaaccaaccagttggcatca 449
              ||||||||||||||||||||
Sbjct: 103294 aaaccaaccagttggcatca 103275



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>gb|AC022994.9| Homo sapiens chromosome 11, clone RP11-735P2, complete sequence
          Length = 167760

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   agcttctgggtcttctgcat 207
             ||||||||||||||||||||
Sbjct: 53149 agcttctgggtcttctgcat 53168



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>gb|AC160055.2| Pan troglodytes BAC clone CH251-555N15 from chromosome unknown,
             complete sequence
          Length = 227737

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tctacaacacatgcaaacag 117
             ||||||||||||||||||||
Sbjct: 75314 tctacaacacatgcaaacag 75295



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>gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, complete sequence
          Length = 184635

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    cactatcagctagctcatct 499
              ||||||||||||||||||||
Sbjct: 124325 cactatcagctagctcatct 124344



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>gb|AC008892.7| Homo sapiens chromosome 5 clone CTD-2227I18, complete sequence
          Length = 113628

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   gctttgcttcctccttactt 352
             ||||||||||||||||||||
Sbjct: 70763 gctttgcttcctccttactt 70744



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>ref|NM_001024929.1| Bos taurus differentiated embryo chondrocyte expressed gene 1
            (BHLHB2), mRNA
          Length = 2918

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 333  gctttgcttcctccttacttccaaaagaacaa 364
            ||||| |||||||| ||||||||||| |||||
Sbjct: 1491 gctttccttcctccctacttccaaaaaaacaa 1522



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>emb|BX571975.7| Zebrafish DNA sequence from clone DKEY-77F3 in linkage group 18, complete
              sequence
          Length = 187272

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    agaaaagaattggttctttt 541
              ||||||||||||||||||||
Sbjct: 142634 agaaaagaattggttctttt 142615



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>emb|BX548070.5| Zebrafish DNA sequence from clone CH211-245P7 in linkage group 18,
              complete sequence
          Length = 173372

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    agaaaagaattggttctttt 541
              ||||||||||||||||||||
Sbjct: 143493 agaaaagaattggttctttt 143474



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>gb|AY107480.1| Zea mays PCO126634 mRNA sequence
          Length = 1070

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 187 gagcttctgggtcttctgcatcac 210
           |||||||||| |||||||||||||
Sbjct: 853 gagcttctggatcttctgcatcac 830



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>emb|CT571266.4| Mouse DNA sequence from clone RP23-255L13 on chromosome 13, complete
              sequence
          Length = 176074

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 544    agaaagggcaacaaggtcga 563
              ||||||||||||||||||||
Sbjct: 142683 agaaagggcaacaaggtcga 142664



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>gb|AC163767.4| Pan troglodytes BAC clone CH251-162B13 from chromosome unknown,
             complete sequence
          Length = 193117

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    tctacaacacatgcaaacag 117
             ||||||||||||||||||||
Sbjct: 69997 tctacaacacatgcaaacag 70016



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>dbj|AP003070.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-4N9, complete
             sequence
          Length = 163905

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    tctacaacacatgcaaacag 117
             ||||||||||||||||||||
Sbjct: 84841 tctacaacacatgcaaacag 84860


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,454,807
Number of Sequences: 3902068
Number of extensions: 5454807
Number of successful extensions: 104153
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104016
Number of HSP's gapped (non-prelim): 129
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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