>KC1D_ARATH (P42158) Casein kinase I isoform delta-like (EC 2.7.11.1)|
           (CKI-delta)
          Length = 450

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 33/80 (41%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -2

Query: 581 STFLGRSGVFSRRPAVSSSRD-LPSSEAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYSD 405
           S F   +G   R  AVS SRD  P SE    RSR  DVS G   RNS P  A        
Sbjct: 373 SLFAQSAGSSRRVTAVSGSRDNFPGSEELLQRSRTGDVSRGVIPRNS-PGEAG------- 424

Query: 404 PRHKSISNNYESTIRGIQGL 345
              KS   +YES ++GI  L
Sbjct: 425 ---KSTRRHYESVVKGIDNL 441

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
 Frame = -2

Query: 641 AYRNR-----SHQSDQICPHRRKLCSTFLGRSGVFSR--RPAVSSSRDLPSSEAEPSRSR 483
           AY+ R     SH S Q  PH    CS+   +S   S    P    +R   +S+   +RS 
Sbjct: 175 AYQQRQLARASHASTQPPPHPPARCSSTHSQSTSSSSPSSPPRKRARSRSASQDSSARSS 234

Query: 482 APDVSPGTFQRNSAPRRASHTLDYSDPRHKSISNN 378
           +   SP    R+  PR  SH   YS    +S S +
Sbjct: 235 SSHASP----RSPTPRTTSHVASYSSYSSRSRSRS 265

>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)|
          Length = 1176

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 635  RNRSHQSDQICPHRRKLCSTFLGRSGVFSRRP---AVSSSRDLPSSEAEPSRSRAPDVSP 465
            + + + S Q+CPH+R    TF    G     P   + SSS   PS  + P RS +P  SP
Sbjct: 971  KGKYYASQQMCPHKR----TFALSDGFVGTDPSPSSCSSSALPPSPPSTPPRSSSPVTSP 1026

Query: 464  GTFQRNSA 441
                 +SA
Sbjct: 1027 PQSPTSSA 1034

>CCNL2_XENTR (Q5BKF8) Cyclin-L2|
          Length = 497

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 24/82 (29%), Positives = 37/82 (45%)
 Frame = -2

Query: 566 RSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYSDPRHKSI 387
           RSG  SR  + S S+   S    P R ++   SP +  ++ +P R+        P HK  
Sbjct: 362 RSGSRSRDQSYSRSQ---SRSQSPKRRKSQSYSPSSDSKSRSPSRSRS----DSPPHKPN 414

Query: 386 SNNYESTIRGIQGLNFDANDRG 321
             +Y+ST   + G N D   +G
Sbjct: 415 HGSYKSTKGHVYGNNSDYKYQG 436

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = -2

Query: 686  PTRKSGSTYKE*MQAAYRNRSH-QSDQICPHRRKLCSTFLGRSGVFSRRPAVSSSRDLPS 510
            P R  G +Y    ++  R+RS  +S    P  R+      GRSG  SR  + S S   P 
Sbjct: 802  PPRGRGRSYDRYSRSPSRSRSRTRSPAAAPPIRR------GRSGTRSRSRSYSRSPSPPP 855

Query: 509  SEAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYSDPRH 396
            +   P+R RAP  +       S  RR   +   S   H
Sbjct: 856  ARGYPTRGRAPVSNNDRAAAASGKRRREGSYSASRSPH 893

>RL4_PROMA (Q7V9W3) 50S ribosomal protein L4|
          Length = 211

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 589 SCVRLFWVGQACSQGDLLFLVAEICQAVKLNHRVVVHQM*VQGHSRE 449
           +C  L W G+   +  L   VA+   AV L HR V+ Q   Q HSR+
Sbjct: 3   NCAVLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQ---QAHSRQ 46

>ANLN_MOUSE (Q8K298) Actin-binding protein anillin|
          Length = 1121

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/74 (31%), Positives = 26/74 (35%)
 Frame = -2

Query: 647 QAAYRNRSHQSDQICPHRRKLCSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVS 468
           Q    N   Q D +      L +      GV S    +SS    P SE   S   A    
Sbjct: 584 QVGAENSEEQEDALNISSMSLLAPLAQTVGVVSLENVISS----PPSELRDSNLSAASPK 639

Query: 467 PGTFQRNSAPRRAS 426
           PG FQR   PR  S
Sbjct: 640 PGKFQRTRVPRAES 653

>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus|
           (Acinus)
          Length = 1338

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
 Frame = -2

Query: 533 SSSRDLPSSEAEPSRSRAPDV-------SPGTFQRNSA-----------PRRASHTLDYS 408
           SS    PSS + PSRS +PD        SPG+ QR+ A           P+  S +   S
Sbjct: 578 SSRSSSPSSSSSPSRSPSPDSVASRPQSSPGSKQRDGAQARVHANPHERPKMGSRSTSES 637

Query: 407 DPRHKSISNNYESTIR 360
             R +S S +  S+ R
Sbjct: 638 RSRSRSRSRSASSSSR 653

>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
           2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
           kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = -2

Query: 680 RKSGSTYKE*MQAAY-RNRSHQSDQICPH-RRKLCSTFLGRSGVFSRRPAVSSSRDLPSS 507
           ++S S Y     ++Y R+ S+      P+ RR+  S FL +  + SR P       LPS 
Sbjct: 299 QRSVSPYSRRRSSSYERSGSYSGRSPSPYGRRRSSSPFLSKRSL-SRSP-------LPSR 350

Query: 506 EAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYSDPRHKSIS 384
           ++  SRSR+P  S  +   +   R +S +      RH SIS
Sbjct: 351 KSMKSRSRSPAYSRHSSSHSKKKRSSSRS------RHSSIS 385

>DKC1_RAT (P40615) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin) (Nucleolar protein family A member 4) (snoRNP
           protein DKC1) (Nopp140-associated protein of 57 kDa)
           (Nucleolar protein NAP57)
          Length = 508

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 237 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 130
           + L + A++S   H V+ K+    + +  YP+KWGL
Sbjct: 347 IALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 382

>DKC1_CHICK (Q5ZJH9) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin)
          Length = 516

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 237 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 130
           + L + A++S   H V+ K+    + +  YP+KWGL
Sbjct: 345 IALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 380

>DKC1_HUMAN (O60832) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin) (Nucleolar protein family A member 4) (snoRNP
           protein DKC1) (Nopp140-associated protein of 57 kDa)
           (Nucleolar protein NAP57) (CBF5 homolog)
          Length = 513

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 237 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 130
           + L + A++S   H ++ K+    + +  YP+KWGL
Sbjct: 346 IALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGL 381

>DKC1_MOUSE (Q9ESX5) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin) (Nucleolar protein family A member 4) (snoRNP
           protein DKC1) (Nopp140-associated protein of 57 kDa)
           (Nucleolar protein NAP57)
          Length = 508

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 237 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 130
           + L + A++S   H ++ K+    + +  YP+KWGL
Sbjct: 346 IALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGL 381

>Y2587_MYCBO (P65004) Hypothetical protein Mb2587|
          Length = 224

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = -3

Query: 673 QVPPTRNKCRQLI-------ETEVTSQTRSVRT-EGSCVRLFWVGQACSQGD 542
           QV P R++C ++        E E+ +  R  R+ EG+CVR  WV     Q D
Sbjct: 86  QVTPIRDRCAEMFGGTPAVEEWEIAAMHRDHRSAEGACVRATWVKVPADQVD 137

>Y2557_MYCTU (P65003) Hypothetical protein Rv2557/MT2634|
          Length = 224

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = -3

Query: 673 QVPPTRNKCRQLI-------ETEVTSQTRSVRT-EGSCVRLFWVGQACSQGD 542
           QV P R++C ++        E E+ +  R  R+ EG+CVR  WV     Q D
Sbjct: 86  QVTPIRDRCAEMFGGTPAVEEWEIAAMHRDHRSAEGACVRATWVKVPADQVD 137

>MAK5_EMENI (Q5BCI0) ATP-dependent RNA helicase mak5 (EC 3.6.1.-)|
          Length = 770

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 457 NVPGLTSGARLRDGSASLLGKSRLLETAGRLENTPDRPKKVEHSFLRCGQ 606
           N PG+ +   L  G  S+  + RLLETA  +  TP R  +V    LR GQ
Sbjct: 303 NAPGVNARTALLTGGLSVQKQQRLLETADIVIGTPGRVWEV----LRTGQ 348

>PDC3_SCHPO (Q9P7P6) Probable pyruvate decarboxylase C186.09 (EC 4.1.1.1)|
          Length = 572

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 529 VAEICQAVKLNHRVVVHQM*VQGHSRETQLHGGPHTR 419
           V E+ Q V+LN  +++  +  +G++ E ++H GP+ R
Sbjct: 457 VQEVSQMVRLNLPIIMFLINNRGYTIEVEIHDGPYNR 493

>AGUA_TRIRE (Q99024) Alpha-glucuronidase precursor (EC 3.2.1.139)|
           (Alpha-glucosiduronase) (GLRI)
          Length = 847

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -2

Query: 392 SISNNYESTIRGIQGLNFDANDRGARPYKA*ISLPVSSYGSYKSCIVYDLLKLNWGARPY 213
           S S+     I+GI GL+ D + RG +      S+ +S+  +Y+S       KLN     Y
Sbjct: 61  SASSELHKGIKGILGLDLDVSSRGGKHCSTQKSIVISTLDTYQSACGKLSPKLNLKEDGY 120

Query: 212 FLN 204
           +L+
Sbjct: 121 WLS 123

>K0553_HUMAN (Q9UKJ3) Protein KIAA0553|
          Length = 1089

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
 Frame = -2

Query: 638 YRNRSHQSDQICPHRRKLCSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRA-PDVSPG 462
           Y     + D    H R    +    S   S R + SSS D  S ++  SR R+  D S  
Sbjct: 423 YSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDSYS 482

Query: 461 TF----QRNSAPRRASHTLDYSDPRHKSISNNYEST 366
            +    +R+S     S   DY+  +H+S  + Y S+
Sbjct: 483 DYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSS 518

>MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, embryonic (Muscle|
            embryonic myosin heavy chain) (SMHCE)
          Length = 1940

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/81 (22%), Positives = 38/81 (46%)
 Frame = -3

Query: 679  ESQVPPTRNKCRQLIETEVTSQTRSVRTEGSCVRLFWVGQACSQGDLLFLVAEICQAVKL 500
            + ++   +   ++ +ET  ++    VR+    +RL    +   +GDL  +  ++  A + 
Sbjct: 1581 DEEIEQLKRNYQRTVETMQSALDAEVRSRNEAIRL----KKKMEGDLNEIEIQLSHANRQ 1636

Query: 499  NHRVVVHQM*VQGHSRETQLH 437
                + H   VQG  ++TQLH
Sbjct: 1637 AAETLKHLRSVQGQLKDTQLH 1657

>FOXD4_MOUSE (Q60688) Forkhead box protein D4 (Forkhead-related protein FKHL9)|
           (Forkhead-related transcription factor 5) (FREAC-5)
           (Transcription factor FKH-2)
          Length = 444

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +3

Query: 126 QPAPISLGKQAASPLQHVACGSHGEVVQKVWPRSPI*LQQ 245
           Q  P  L  QAASPL H++ GS   + Q+  P+ P+ LQQ
Sbjct: 352 QHPPCLLHPQAASPLFHMSAGSRTILPQQ--PQPPLPLQQ 389

>GGT_PSEUA (P36267) Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2)|
           [Contains: Gamma-glutamyltransferase large chain;
           Gamma-glutamyltransferase small chain]
          Length = 575

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 231 LGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGLAGEIKVG 109
           LG    +   L H++ K +AA +R    P+K G++ EIK G
Sbjct: 327 LGDPDFVKNPLAHLLDKDYAAKIRAAINPQKAGISQEIKPG 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,875,163
Number of Sequences: 219361
Number of extensions: 2196237
Number of successful extensions: 6261
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6250
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)