>PCSK5_MOUSE (Q04592) Proprotein convertase subtilisin/kexin type 5 precursor|
           (EC 3.4.21.-) (Proprotein convertase PC5)
           (Subtilisin/kexin-like protease PC5) (PC6)
           (Subtilisin-like proprotein convertase 6) (SPC6)
          Length = 1877

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 108 VCNRDSHTCRACISYYTCRACKVQLVLR 25
           VC + S  C+ACI ++ C  CK  L L+
Sbjct: 738 VCGKCSENCKACIGFHNCTECKGGLSLQ 765

>PAT3_CAEEL (Q27874) Integrin beta pat-3 precursor|
          Length = 809

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 177 PSSDSGI*SLSKELHAEVENTCRVCNRDSHTCRACISYY-TCRAC 46
           P+SD     ++ ++  + E  C   +RD++TC ACI Y+ +C  C
Sbjct: 19  PASDWKTGEVTGKVVEKSEFPCYSLSRDNYTCSACIQYHESCAWC 63

>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing
            protease 6) (Deubiquitinating enzyme 6) (Proto-oncogene
            TRE-2)
          Length = 1406

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 117  TCRVCNRDSHTCRACISYYTCRACKV 40
            T RV  +D ++C  C  Y  CR CK+
Sbjct: 954  TLRVVQKDGNSCAWCPQYRFCRGCKI 979

>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31|
          Length = 264

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 206 DRGRHSLDYGPPVTPAFDRYRRSS 135
           D GR S DYG   +P +DRYR  S
Sbjct: 234 DYGRRSSDYGRQRSPGYDRYRSRS 257

>NH125_CAEEL (O17082) Nuclear hormone receptor family member nhr-125|
          Length = 399

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 7/26 (26%)
 Frame = -1

Query: 117 TCRVCNRDSH-------TCRACISYY 61
           +CR+CN+ +H       TCRAC S++
Sbjct: 12  SCRICNQKAHGNHFGVLTCRACASFF 37

>NHR55_CAEEL (O16962) Nuclear hormone receptor family member nhr-55|
          Length = 424

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
 Frame = -1

Query: 177 PSSDSGI*SLSKELHAEV---ENTCRVCNRDSH-------TCRACISYY 61
           PSS S   S S    + V    +TC+VC + SH       TCRAC +++
Sbjct: 4   PSSSSSFCSSSSSPSSLVLYSPDTCQVCGQKSHGKHFGAVTCRACAAFF 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,334,140
Number of Sequences: 219361
Number of extensions: 1744923
Number of successful extensions: 3425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3423
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)