ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10m23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC093327.5| Homo sapiens BAC clone RP11-765B19 from 2, complete sequence Length = 7198 Score = 60.0 bits (30), Expect = 1e-05 Identities = 30/30 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattattttccataaacaa 542 |||||||||||||||||||||||||||||| Sbjct: 1780 tgatatttaattattattttccataaacaa 1809
>gb|AC013401.10| Homo sapiens BAC clone RP11-98N11 from 2, complete sequence Length = 168595 Score = 60.0 bits (30), Expect = 1e-05 Identities = 30/30 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattattttccataaacaa 542 |||||||||||||||||||||||||||||| Sbjct: 168375 tgatatttaattattattttccataaacaa 168404
>gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, complete sequence Length = 104787 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Plus Query: 645 aattttgaagtacataatttatatacta 672 |||||||||||||||| ||||||||||| Sbjct: 8811 aattttgaagtacatattttatatacta 8838
>gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, complete sequence Length = 176450 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 154 tcaaatgccggagtcactggag 175 |||||||||||||||||||||| Sbjct: 140430 tcaaatgccggagtcactggag 140409
>gb|AC012358.9| Homo sapiens BAC clone RP11-321E13 from 2, complete sequence Length = 162151 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Minus Query: 587 aaaaataaagactttttggaca 608 |||||||||||||||||||||| Sbjct: 60814 aaaaataaagactttttggaca 60793
>gb|AC093003.11| Homo sapiens 3 BAC RP11-114I8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153680 Score = 44.1 bits (22), Expect = 0.63 Identities = 28/30 (93%) Strand = Plus / Plus Query: 318 aagcaataaacaaaaagaagagtgtatcaa 347 |||||| |||||||||||| |||||||||| Sbjct: 118779 aagcaaaaaacaaaaagaaaagtgtatcaa 118808
>emb|BX005135.5| Zebrafish DNA sequence from clone CH211-89P16 in linkage group 11, complete sequence Length = 166622 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 581 aactataaaaataaagactttt 602 |||||||||||||||||||||| Sbjct: 24705 aactataaaaataaagactttt 24726
>emb|CR936484.5| Zebrafish DNA sequence from clone DKEY-34D22 in linkage group 16, complete sequence Length = 120133 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 479 gtcacaatacgaaatacatgtg 500 |||||||||||||||||||||| Sbjct: 57453 gtcacaatacgaaatacatgtg 57474
>emb|CR940308.12| M.truncatula DNA sequence from clone MTH2-17G23 on chromosome 3, complete sequence Length = 121494 Score = 44.1 bits (22), Expect = 0.63 Identities = 22/22 (100%) Strand = Plus / Plus Query: 626 ttgatttaatatgtataataat 647 |||||||||||||||||||||| Sbjct: 119121 ttgatttaatatgtataataat 119142
>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence Length = 249995 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 629 atttaatatgtataataattt 649 ||||||||||||||||||||| Sbjct: 223234 atttaatatgtataataattt 223254
>gb|AC160095.1| Lycopersicon esculentum chromosome 0 clone BB-BA4 map MAP_LOC, complete sequence Length = 121127 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 attattttccataaacaatag 545 ||||||||||||||||||||| Sbjct: 67574 attattttccataaacaatag 67554
>gb|AC158794.4| Mus musculus chromosome 1, clone RP23-306I10, complete sequence Length = 239904 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 644 taattttgaagtacataatttatat 668 ||||||| ||||||||||||||||| Sbjct: 85245 taattttcaagtacataatttatat 85269
>emb|Z19555.1|CEF02A9 Caenorhabditis elegans Cosmid F02A9, complete sequence Length = 26242 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 tttaattattattttccataa 538 ||||||||||||||||||||| Sbjct: 24792 tttaattattattttccataa 24772
>emb|BX649215.1| Human DNA sequence from clone RP11-575L16 on chromosome 10 Contains a novel pseudogene (FLJ12916) (MGC5560), a Ras homolog enriched in brain (RHEB) pseudogene and a CpG island, complete sequence Length = 77278 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 aaaataaagactttttggaca 608 ||||||||||||||||||||| Sbjct: 15193 aaaataaagactttttggaca 15213
>emb|AL731733.9| Human DNA sequence from clone RP11-508M1 on chromosome 10 Contains a centaurin gamma-like family member 9 pseudogene (CTGLF9P), a BMS1L pseudogene 5 (BMS1LP5), a dual specificity phosphatase 8 (DUSP8) pseudogene, a glutamate dehydrogenase pseudogene 2 (GLUDP2), a cathepsin L-like 3 pseudogene (CTCLL3), three novel genes and three CpG islands, complete sequence Length = 211345 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 aaaataaagactttttggaca 608 ||||||||||||||||||||| Sbjct: 190205 aaaataaagactttttggaca 190225
>emb|AL445528.16| Human DNA sequence from clone RP11-419N10 on chromosome 1 Contains the APCS gene for serum amyloid P component, the OR10J6P locus for olfactory receptor family 10 subfamily J member 6 pseudogene, a pentraxin-related C-reactive protein (CRP) pseudogene, the CRP gene for pentraxin-related C-reactive protein and a ribosomal protein L27 (RPL27) pseudogene, complete sequence Length = 195274 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 681 ccacaatatttcctagattcc 701 ||||||||||||||||||||| Sbjct: 15342 ccacaatatttcctagattcc 15362
>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 629 atttaatatgtataataattt 649 ||||||||||||||||||||| Sbjct: 235529 atttaatatgtataataattt 235509
>emb|AL356056.22| Human DNA sequence from clone RP11-38L15 on chromosome 10 Contains a gene for a protein similar to FLJ12916, two novel genes, the gene for synaptotagmin (CHR10SYT), a Ras homolog enriched in brain 2 (RHEB2) pseudogene, the 5' end of a novel gene (LOC142964) and two CpG islands, complete sequence Length = 183976 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 aaaataaagactttttggaca 608 ||||||||||||||||||||| Sbjct: 72124 aaaataaagactttttggaca 72144
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 627 tgatttaatatgtataataat 647 ||||||||||||||||||||| Sbjct: 274342 tgatttaatatgtataataat 274322
>gb|AC091157.7| Homo sapiens 3 BAC RP11-554C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 99995 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 514 gatatttaattattattttcc 534 ||||||||||||||||||||| Sbjct: 21220 gatatttaattattattttcc 21200
>gb|AC114322.2| Homo sapiens chromosome 5 clone RP11-74D3, complete sequence Length = 133348 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 gaacgtgatatttaattatta 528 ||||||||||||||||||||| Sbjct: 128257 gaacgtgatatttaattatta 128237
>gb|AC117401.3| Homo sapiens 3 BAC RP11-521J5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197360 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 305 agccatcaaggaaaagcaataaacaaaaa 333 |||||||||||||| |||| ||||||||| Sbjct: 81285 agccatcaaggaaatgcaaaaaacaaaaa 81313
>gb|AC073538.5|AC073538 Homo sapiens chromosome 5 clone CTD-2338P8, complete sequence Length = 98291 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 gaacgtgatatttaattatta 528 ||||||||||||||||||||| Sbjct: 16022 gaacgtgatatttaattatta 16002
>gb|AY796114.1| Lycopersicon esculentum clone Le_HBa 153G23 putative transposase, putative BAH domain-containing protein, putative permease I, putative pollen specific LIM domain-containing protein, putative betaine aldehyde dehyrogenase, EDS1, and putative ribosomal-protein S6 kinase-like protein genes, complete cds Length = 121127 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 attattttccataaacaatag 545 ||||||||||||||||||||| Sbjct: 67574 attattttccataaacaatag 67554
>emb|CT737354.2| Human DNA sequence from clone XX-HCC1954_39C20, complete sequence Length = 148559 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 gaacgtgatatttaattatta 528 ||||||||||||||||||||| Sbjct: 36613 gaacgtgatatttaattatta 36633
>gb|AC092498.8| Mus musculus strain C57BL/6J chromosome 9 clone rp23-21l18, complete sequence Length = 233208 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 aatatgtataataattttgaa 653 ||||||||||||||||||||| Sbjct: 170636 aatatgtataataattttgaa 170616
>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence Length = 298406 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 515 atatttaattattattttcca 535 ||||||||||||||||||||| Sbjct: 276338 atatttaattattattttcca 276318
>gb|AC147560.3| Mus musculus BAC clone RP23-451A8 from 9, complete sequence Length = 177220 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 aatatgtataataattttgaa 653 ||||||||||||||||||||| Sbjct: 156276 aatatgtataataattttgaa 156256
>gb|M25580.1|CELGLP1A C.elegans glp-1 gene, complete cds Length = 10776 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 tttaattattattttccataa 538 ||||||||||||||||||||| Sbjct: 7738 tttaattattattttccataa 7718
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 aagaagaattagaaaatttg 246 |||||||||||||||||||| Sbjct: 841360 aagaagaattagaaaatttg 841379
>gb|AC139218.10| Mus musculus chromosome 15, clone RP23-456O10, complete sequence Length = 163749 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 aataattttgaagtacataattta 665 |||||||||| ||||||||||||| Sbjct: 35394 aataattttgcagtacataattta 35371
>gb|AF094574.1| Haemophilus influenzae type b trigger factor (tig) gene, partial cds; hemoglobin/hemoglobin-haptoglobin binding protein (hgpC) and negative regulator of translation (relB) genes, complete cds; translation factor (selB) gene, partial cds; and unknown gene Length = 5489 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 atttaatatgtataataatt 648 |||||||||||||||||||| Sbjct: 1169 atttaatatgtataataatt 1188
>gb|AC169700.1| Rhesus Macaque BAC CH250-20P14 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 195624 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 608 aagaaaaaagataattctttgatt 631 ||||||||| |||||||||||||| Sbjct: 85042 aagaaaaaaaataattctttgatt 85019
>gb|AY521251.1| Aleurodicus dugesii mitochondrion, complete genome Length = 15723 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 aactataaaaataaagactt 600 |||||||||||||||||||| Sbjct: 4675 aactataaaaataaagactt 4656
>gb|AC149783.2| Bos taurus BAC CH240-3K17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 205084 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 tttaattattattttccata 537 |||||||||||||||||||| Sbjct: 82171 tttaattattattttccata 82190
>gb|AC126421.12| Mus musculus chromosome 1, clone RP23-167H24, complete sequence Length = 218458 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 ttacaaactctacaagtgttttct 124 ||||||||||| |||||||||||| Sbjct: 123700 ttacaaactcttcaagtgttttct 123677
>emb|CR352242.13| Zebrafish DNA sequence from clone CH211-218G4 in linkage group 23, complete sequence Length = 123503 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 tttaattattattttccata 537 |||||||||||||||||||| Sbjct: 58668 tttaattattattttccata 58687
>emb|CR954189.2| Medicago truncatula chromosome 5 clone mte1-73d17, COMPLETE SEQUENCE Length = 110556 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 109533 tgatatttaattattatttt 109514
>gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosome 7, complete sequence Length = 186858 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 caagctctacaagtatggga 93 |||||||||||||||||||| Sbjct: 65050 caagctctacaagtatggga 65069
>gb|AC004605.1|HUAC004605 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-248F7, complete sequence Length = 259474 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 gatttaatatgtataataat 647 |||||||||||||||||||| Sbjct: 221291 gatttaatatgtataataat 221272
>emb|Z69361.1|CET13H10 Caenorhabditis elegans Cosmid T13H10, complete sequence Length = 30601 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aacaatagagttaatttgaa 557 |||||||||||||||||||| Sbjct: 172 aacaatagagttaatttgaa 153
>gb|AC131787.3| Mus musculus BAC clone RP24-397K14 from chromosome 18, complete sequence Length = 159775 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 aaaaaagataattctttgat 630 |||||||||||||||||||| Sbjct: 122523 aaaaaagataattctttgat 122542
>gb|AC122271.4| Mus musculus BAC clone RP23-222D3 from 18, complete sequence Length = 199493 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 aaaaaagataattctttgat 630 |||||||||||||||||||| Sbjct: 6937 aaaaaagataattctttgat 6956
>gb|AC129541.15| Mus musculus chromosome 15, clone RP23-248M12, complete sequence Length = 197803 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 630 tttaatatgtataataattttgaa 653 |||||||| ||||||||||||||| Sbjct: 143216 tttaatatctataataattttgaa 143193
>gb|AC092208.6| Homo sapiens BAC clone RP11-476O21 from 7, complete sequence Length = 135912 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 taattattattttccataaa 539 |||||||||||||||||||| Sbjct: 60922 taattattattttccataaa 60903
>ref|XM_947740.1| Theileria annulata strain Ankara hypothetical protein (TA09320) partial mRNA Length = 1005 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 agaagaattagaaaatttgg 247 |||||||||||||||||||| Sbjct: 231 agaagaattagaaaatttgg 250
>gb|AC073148.7| Homo sapiens BAC clone RP11-801B4 from 7, complete sequence Length = 166847 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 aaaagataattctttgattt 632 |||||||||||||||||||| Sbjct: 43996 aaaagataattctttgattt 44015
>emb|CR812472.9| Zebrafish DNA sequence from clone DKEY-110G7 in linkage group 3, complete sequence Length = 194804 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 aatatgtataataattttga 652 |||||||||||||||||||| Sbjct: 150974 aatatgtataataattttga 150993
>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence Length = 111412 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 31758 tgatatttaattattatttt 31777
>gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete sequence Length = 123565 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 10806 tgatatttaattattatttt 10787
>gb|AC140029.19| Medicago truncatula clone mth2-20g24, complete sequence Length = 124043 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 112292 tgatatttaattattatttt 112311
>gb|AC152348.7| Medicago truncatula clone mth2-52e17, complete sequence Length = 122070 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 80629 tgatatttaattattatttt 80610
>gb|AC124958.13| Medicago truncatula clone mth2-18i11, complete sequence Length = 120562 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 109785 tgatatttaattattatttt 109804
>gb|AC134049.24| Medicago truncatula clone mth2-21j3, complete sequence Length = 124857 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 98052 tgatatttaattattatttt 98071
>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence Length = 104336 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 32252 tgatatttaattattatttt 32271
>gb|AC140032.4| Medicago truncatula clone mth2-10i23, complete sequence Length = 124302 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 6134 tgatatttaattattatttt 6153
>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence Length = 135659 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 63690 tgatatttaattattatttt 63709
>emb|Z95113.2|HS175E3 Human DNA sequence from clone CTA-175E3 on chromosome 22q12.1, complete sequence Length = 110042 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 tttttggacaagaaaaaaga 618 |||||||||||||||||||| Sbjct: 45592 tttttggacaagaaaaaaga 45611
>gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, complete sequence Length = 204574 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 aataattttgaagtacataattta 665 |||||||||| ||||||||||||| Sbjct: 179372 aataattttgcagtacataattta 179349
>gb|AC098022.5| Rattus norvegicus 7 BAC CH230-53D11 (Children's Hospital Oakland Research Institute) complete sequence Length = 233080 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tacttcagcatggagctcct 143 |||||||||||||||||||| Sbjct: 100744 tacttcagcatggagctcct 100763
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ccatcaaggaaaagcaataa 326 |||||||||||||||||||| Sbjct: 838743 ccatcaaggaaaagcaataa 838762
>emb|AL391746.2|SPAC212 S.pombe chromosome I cosmid c212 Length = 29663 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 aataaacaaaaagaagagtg 341 |||||||||||||||||||| Sbjct: 20234 aataaacaaaaagaagagtg 20253
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 3/6 Length = 317511 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 aagaagaattagaaaatttg 246 |||||||||||||||||||| Sbjct: 140247 aagaagaattagaaaatttg 140266
>emb|AL691507.17| Mouse DNA sequence from clone RP23-215F20 on chromosome 11 no genes, complete sequence Length = 114964 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 atatttaattattattttcc 534 |||||||||||||||||||| Sbjct: 10926 atatttaattattattttcc 10907
>emb|AL390095.1|SPAC750 S.pombe chromosome I cosmid c750 Length = 24290 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 aataaacaaaaagaagagtg 341 |||||||||||||||||||| Sbjct: 16314 aataaacaaaaagaagagtg 16295
>gb|AC026320.25| Homo sapiens 3 BAC RP11-655G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172681 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 taaatgtgcttgatgtagta 412 |||||||||||||||||||| Sbjct: 46212 taaatgtgcttgatgtagta 46193
>gb|AC128684.4| Homo sapiens 3 BAC RP11-117K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 80307 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aggaaaagcaataaacaaaa 332 |||||||||||||||||||| Sbjct: 59119 aggaaaagcaataaacaaaa 59100
>gb|AC092965.4| Homo sapiens 3 BAC RP11-440K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187033 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 aagaaaaaagataattcttt 627 |||||||||||||||||||| Sbjct: 171857 aagaaaaaagataattcttt 171876
>emb|BX276108.6| Zebrafish DNA sequence from clone CH211-265M17 in linkage group 24, complete sequence Length = 144165 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 aaagcaataaacaaaaagaa 336 |||||||||||||||||||| Sbjct: 113539 aaagcaataaacaaaaagaa 113558
>gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete sequence Length = 116158 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 654 gtacataatttatatactaa 673 |||||||||||||||||||| Sbjct: 97783 gtacataatttatatactaa 97802
>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence Length = 121626 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 114285 tgatatttaattattatttt 114266
>gb|AC146722.16| Medicago truncatula clone mth2-23c16, complete sequence Length = 121968 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 77734 tgatatttaattattatttt 77715
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence Length = 116601 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 98203 tgatatttaattattatttt 98184
>gb|AC135319.28| Medicago truncatula clone mth2-6g4, complete sequence Length = 120194 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 40702 tgatatttaattattatttt 40683
>gb|AC144474.22| Medicago truncatula clone mth2-15l5, complete sequence Length = 142202 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 10777 tgatatttaattattatttt 10758
>gb|AC117526.2| Homo sapiens chromosome 5 clone RP11-120B6, complete sequence Length = 99808 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 608 aagaaaaaagataattcttt 627 |||||||||||||||||||| Sbjct: 82706 aagaaaaaagataattcttt 82687
>gb|AC011594.8| Homo sapiens 12p12-27.2-31.7 BAC RP11-18J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105207 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 ggatggatgggattggctaa 378 |||||||||||||||||||| Sbjct: 66968 ggatggatgggattggctaa 66987
>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177115 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 647 ttttgaagtacataatttatatac 670 |||| ||||||||||||||||||| Sbjct: 60247 tttttaagtacataatttatatac 60224
>gb|DQ078204.1| Hylomyscus sp. VVN-2005.1 voucher GA0528 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 486 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 ttaattattattttccataa 538 |||||||||||||||||||| Sbjct: 213 ttaattattattttccataa 232
>gb|DQ078203.1| Hylomyscus sp. VVN-2005.1 voucher GA1204 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 486 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 ttaattattattttccataa 538 |||||||||||||||||||| Sbjct: 213 ttaattattattttccataa 232
>gb|DQ078201.1| Hylomyscus sp. VVN-2005.1 voucher GA3646 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 486 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 ttaattattattttccataa 538 |||||||||||||||||||| Sbjct: 213 ttaattattattttccataa 232
>dbj|AK164812.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830027N05 product:hypothetical protein, full insert sequence Length = 5139 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 caagctctacaagtatggga 93 |||||||||||||||||||| Sbjct: 496 caagctctacaagtatggga 477
>gb|AC159622.2| Mus musculus BAC clone RP24-289D12 from chromosome 12, complete sequence Length = 174662 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 640 ataataattttgaagtacat 659 |||||||||||||||||||| Sbjct: 37623 ataataattttgaagtacat 37642
>gb|AC026778.4|AC026778 Homo sapiens chromosome 5 clone CTC-428I11, complete sequence Length = 195433 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 aagaaaaaagataattcttt 627 |||||||||||||||||||| Sbjct: 192867 aagaaaaaagataattcttt 192886
>gb|AC092128.3| Homo sapiens chromosome 16 clone RP11-133M24, complete sequence Length = 202725 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 gatttaatatgtataataat 647 |||||||||||||||||||| Sbjct: 178289 gatttaatatgtataataat 178308
>gb|AC067754.6|AC067754 Arabidopsis thaliana chromosome 1 BAC T9N14 genomic sequence, complete sequence Length = 98874 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 506 gtgaacgtgatatttaattattattttc 533 ||||| ||||||||| |||||||||||| Sbjct: 16701 gtgaaagtgatattttattattattttc 16674
>gb|AE014846.1| Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence Length = 253132 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 taattattattttccataaa 539 |||||||||||||||||||| Sbjct: 36220 taattattattttccataaa 36201
>gb|AC083973.14| Homo sapiens chromosome 8, clone RP11-231D20, complete sequence Length = 188573 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 tcaaggaaaagcaataaacaaaaa 333 |||||| ||||||||||||||||| Sbjct: 137791 tcaaggtaaagcaataaacaaaaa 137768
>gb|AC138627.1| Homo sapiens chromosome 16 clone RP11-42H13, complete sequence Length = 170920 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 gatttaatatgtataataat 647 |||||||||||||||||||| Sbjct: 159584 gatttaatatgtataataat 159565
>gb|AC026205.6|AC026205 Homo sapiens chromosome 3 clone RP11-61I9 map 3p, complete sequence Length = 176669 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ttagaaaatttggaggcaac 254 |||||||||||||||||||| Sbjct: 52070 ttagaaaatttggaggcaac 52051
>gb|AC024159.4|AC024159 Homo sapiens chromosome 3 clone RP11-255K15 map 3p, complete sequence Length = 195544 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ttagaaaatttggaggcaac 254 |||||||||||||||||||| Sbjct: 165905 ttagaaaatttggaggcaac 165924
>gb|AF270246.1|AF270246 Staphylococcus epidermidis strain SR1 clone step.1056d03 genomic sequence Length = 2978 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 1447 tgatatttaattattatttt 1428
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 2093969 tgatatttaattattatttt 2093988
>emb|AL929026.10| Mouse DNA sequence from clone RP23-332K7 on chromosome 2, complete sequence Length = 124244 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 aagaaaaaagataattcttt 627 |||||||||||||||||||| Sbjct: 34574 aagaaaaaagataattcttt 34593
>emb|AL935306.6| Zebrafish DNA sequence from clone DKEY-65O9, complete sequence Length = 207183 Score = 40.1 bits (20), Expect = 9.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 664 tatatactaaggattttccacaatatttccta 695 ||||||||||| ||||| |||| ||||||||| Sbjct: 9573 tatatactaagaatttttcacagtatttccta 9604
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 616 agataattctttgatttaat 635 |||||||||||||||||||| Sbjct: 526086 agataattctttgatttaat 526067
>emb|AJ328599.1|HSA328599 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OD19C Length = 747 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 671 taaggattttccacaatatt 690 |||||||||||||||||||| Sbjct: 620 taaggattttccacaatatt 601
>emb|BX842684.4| Zebrafish DNA sequence from clone DKEY-33I22 in linkage group 20, complete sequence Length = 140982 Score = 40.1 bits (20), Expect = 9.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 324 taaacaaaaagaagagtgtatcaacacgtttc 355 ||||||||||||||| | | |||||||||||| Sbjct: 124040 taaacaaaaagaagattttttcaacacgtttc 124009
>emb|BX927241.19| Zebrafish DNA sequence from clone DKEY-184P18 in linkage group 19, complete sequence Length = 140932 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tcttaaatgtgcttgatgta 409 |||||||||||||||||||| Sbjct: 80669 tcttaaatgtgcttgatgta 80688
>emb|BX465868.6| Zebrafish DNA sequence from clone DKEY-42I9 in linkage group 22, complete sequence Length = 222195 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 672 aaggattttccacaatatttccta 695 |||||||||||||| ||||||||| Sbjct: 134686 aaggattttccacagtatttccta 134709
>emb|BX784043.1|SPBPT2R1 S.pombe chromosome II PCR product pomTelo2R Length = 33574 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 aataaacaaaaagaagagtg 341 |||||||||||||||||||| Sbjct: 9726 aataaacaaaaagaagagtg 9707
>emb|CT571264.2| Medicago truncatula chromosome 5 clone mth2-146m15, COMPLETE SEQUENCE Length = 141614 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 26375 tgatatttaattattatttt 26356
>emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h23, COMPLETE SEQUENCE Length = 121342 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 62741 tgatatttaattattatttt 62760
>emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE Length = 132030 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 39485 tgatatttaattattatttt 39466
>emb|AL163952.5|CNS05TBP Human chromosome 14 DNA sequence BAC R-1012E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196514 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 atttaatatgtataataatt 648 |||||||||||||||||||| Sbjct: 174989 atttaatatgtataataatt 175008
>gb|AF063866.1|AF063866 Melanoplus sanguinipes entomopoxvirus, complete genome Length = 236120 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 631 ttaatatgtataataatttt 650 |||||||||||||||||||| Sbjct: 42054 ttaatatgtataataatttt 42035
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 2099213 tgatatttaattattatttt 2099232
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 629 atttaatatgtataataatt 648 |||||||||||||||||||| Sbjct: 761382 atttaatatgtataataatt 761363
>emb|BX470255.18| Zebrafish DNA sequence from clone DKEY-76A14 in linkage group 1, complete sequence Length = 203708 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 tttgatttaatatgtataataatt 648 ||||||||||||||| |||||||| Sbjct: 132692 tttgatttaatatgtttaataatt 132669
>emb|AL837515.9| Zebrafish DNA sequence from clone CH211-261F22 in linkage group 5, complete sequence Length = 153980 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 aatatgtataataattttga 652 |||||||||||||||||||| Sbjct: 61792 aatatgtataataattttga 61773
>emb|AL935048.7| Zebrafish DNA sequence from clone CH211-168M7, complete sequence Length = 137662 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tgatatttaattattatttt 532 |||||||||||||||||||| Sbjct: 19460 tgatatttaattattatttt 19479
>emb|AL929380.9| Mouse DNA sequence from clone RP23-467E8 on chromosome 2, complete sequence Length = 140917 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 673 aggattttccacaatatttcctag 696 ||||||||||||||||||| |||| Sbjct: 24691 aggattttccacaatattttctag 24668
>gb|AC026167.5| Homo sapiens chromosome 3 clone RP11-140B10 map 3p, complete sequence Length = 188867 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ttagaaaatttggaggcaac 254 |||||||||||||||||||| Sbjct: 91625 ttagaaaatttggaggcaac 91644
>dbj|AB070573.1| Caenorhabditis elegans pph-4.1 mRNA for Ser/Thr protein phosphatase, complete cds Length = 1264 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 atatttaattattattttcc 534 |||||||||||||||||||| Sbjct: 1133 atatttaattattattttcc 1152
>dbj|AP000437.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-39H21, complete sequence Length = 150125 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 aaagcaataaacaaaaagaa 336 |||||||||||||||||||| Sbjct: 82229 aaagcaataaacaaaaagaa 82248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,149,215 Number of Sequences: 3902068 Number of extensions: 9149215 Number of successful extensions: 209402 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 208600 Number of HSP's gapped (non-prelim): 802 length of query: 720 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 697 effective length of database: 17,143,297,704 effective search space: 11948878499688 effective search space used: 11948878499688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
