ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11b21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 392 e-106
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
3dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
4ref|NM_104193.3| Arabidopsis thaliana ATP binding / GTP binding ... 46 0.15
5emb|BX842486.1|CNS0AAKF Arabidopsis thaliana Full-length cDNA Co... 46 0.15
6gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis thaliana... 46 0.15
7gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L... 46 0.15
8gb|AC165151.2| Mus musculus BAC clone RP24-77O15 from chromosome... 42 2.3
9emb|AL583827.7| Human DNA sequence from clone RP11-172F7 on chro... 42 2.3
10gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, comple... 42 2.3
11gb|DQ156349.1| Uncultured marine group II euryarchaeote HF70_39H... 42 2.3
12emb|BX322786.4| Zebrafish DNA sequence from clone CH211-200L16 i... 42 2.3
13gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 42 2.3
14gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, com... 40 9.3
15ref|XM_509159.1| PREDICTED: Pan troglodytes similar to 1300003K2... 40 9.3
16gb|AE017308.1| Mycoplasma mobile 163K complete genome 40 9.3
17gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, com... 40 9.3
18ref|XM_864339.1| PREDICTED: Bos taurus similar to R3H domain pro... 40 9.3
19gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosom... 40 9.3
20gb|AC164554.2| Mus musculus BAC clone RP23-351O14 from chromosom... 40 9.3
21emb|CR392364.6| Zebrafish DNA sequence from clone CH211-230I4 in... 40 9.3
22gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, co... 40 9.3
23gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, comple... 40 9.3
24gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, co... 40 9.3
25gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome... 40 9.3
26gb|BC112226.1| Homo sapiens R3H domain containing 2, mRNA (cDNA ... 40 9.3
27gb|BC104995.1| Homo sapiens R3H domain containing 2, mRNA (cDNA ... 40 9.3
28gb|BC041857.1| Homo sapiens R3H domain containing 2, mRNA (cDNA ... 40 9.3
29emb|CR859659.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2113 (from cl... 40 9.3
30dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 9.3
31gb|DQ247788.1| Capnodium coffeae isolate AFTOL-ID 939 RNA polyme... 40 9.3
32gb|AC153924.8| Mus musculus 10 BAC RP23-74P12 (Roswell Park Canc... 40 9.3
33dbj|AB178773.1| Lingula anatina mitochondrial cox1, cox2, nad2, ... 40 9.3
34gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, compl... 40 9.3
35gb|AC098657.2| Homo sapiens chromosome 1 clone RP11-339A11, comp... 40 9.3
36gb|AC024243.8| Homo sapiens BAC clone RP11-528I4 from 4, complet... 40 9.3
37gb|AC010430.5| Homo sapiens chromosome 5 clone CTD-2201D24, comp... 40 9.3
38gb|AC008504.7| Homo sapiens chromosome 5 clone CTC-444E21, compl... 40 9.3
39ref|NM_014925.2| Homo sapiens R3H domain containing 2 (R3HDM2), ... 40 9.3
40gb|L77573.1|AEOALT Aeromonas hydrophila cytotonic enterotoxin (a... 40 9.3
41gb|AC137834.9| Homo sapiens 12 BAC RP11-123K3 (Roswell Park Canc... 40 9.3
42gb|AC010132.5|AC010132 Homo sapiens BAC clone RP11-111K18 from 7... 40 9.3
43gb|AC083973.14| Homo sapiens chromosome 8, clone RP11-231D20, co... 40 9.3
44emb|BX545918.4| Zebrafish DNA sequence from clone DKEYP-22F11 in... 40 9.3
45dbj|AB023219.1| Homo sapiens mRNA for KIAA1002 protein, partial cds 40 9.3
46gb|AC147874.3| Monodelphis domestica clone VMRC6-639B11, complet... 40 9.3
47emb|BX663503.10| Zebrafish DNA sequence from clone CH211-136A13 ... 40 9.3
48gb|AF092033.1|AF092033 Aeromonas hydrophila phospholipase A1 (pl... 40 9.3
49gb|DQ302132.1| Aeromonas hydrophila strain HA7 cytotonic enterot... 40 9.3
50gb|DQ302131.1| Aeromonas hydrophila strain GA1 cytotonic enterot... 40 9.3
51gb|DQ302130.1| Aeromonas hydrophila strain CA1 cytotonic enterot... 40 9.3
52gb|DQ302128.1| Aeromonas hydrophila strain BA16 cytotonic entero... 40 9.3
53gb|AC154589.3| Mus musculus BAC clone RP23-367D5 from chromosome... 40 9.3
54gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 9.3
55emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in l... 40 9.3
56gb|AC119921.12| Mus musculus chromosome 12, clone RP24-252B23, c... 40 9.3
57gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complet... 40 9.3
58emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chr... 40 9.3
59emb|AL935048.7| Zebrafish DNA sequence from clone CH211-168M7, c... 40 9.3
60gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome... 40 9.3
61gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 9.3 
>dbj|AK103720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138A06, full
            insert sequence
          Length = 3120

 Score =  392 bits (198), Expect = e-106
 Identities = 375/434 (86%)
 Strand = Plus / Minus

                                                                        
Query: 239  cgctccattgcaaggtcaaataagctttgcaggacaaatgcaagccgatcacatgtagtt 298
            ||||||||||||||||||||||  ||||| || ||||||||||||||||||||||  || 
Sbjct: 2562 cgctccattgcaaggtcaaatagactttggagaacaaatgcaagccgatcacatgctgta 2503

                                                                        
Query: 299  tcagtaagaggagcaagccatgatcgtgcagccgcgcgtgctatctcagcagctgcctca 358
            ||  |||| ||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 2502 tcgataaggggagcaagccatgatcgtgcagctgcacgtgctatctcagctgctgcctca 2443

                                                                        
Query: 359  gtcatcccactgcttccacctcttccagcatgggcaagtaatatgttcgcaaccttctct 418
            |||| |||||| || ||||||| ||||||||| ||||||| |||||| ||||||||||||
Sbjct: 2442 gtcaacccactactcccacctcgtccagcatgtgcaagtagtatgtttgcaaccttctct 2383

                                                                        
Query: 419  cttgacacctgtgggcactccatggaatatgtcgcagagcggaattcgtgcattaccctc 478
            ||||| |||||||| |||||||| || ||||| ||| |||||||||| |||||||| |||
Sbjct: 2382 cttgaaacctgtggacactccattgagtatgttgcacagcggaattcatgcattactctc 2323

                                                                        
Query: 479  tcaaaagccgcaccaccatacagcttaaggctggagtggggaggttttacaggaacgctg 538
            |||||||| ||||||||||| |  ||||| ||||||| ||| ||||||||||| | | | 
Sbjct: 2322 tcaaaagctgcaccaccatataatttaagactggagttgggtggttttacaggcatgtta 2263

                                                                        
Query: 539  gtgctaggccagttgtcaataccactgtgaatttgctcctcttcagtagtttccccccac 598
             ||| ||||||| || | |||||||| || || || |||||||||||||||| |||||| 
Sbjct: 2262 atgccaggccagctgcctataccactatgcatctgttcctcttcagtagttttcccccat 2203

                                                                        
Query: 599  acctctggggctggatcagctgctccatcaagtaatgcacgcaaatgggtgcagatagaa 658
            | |||||| ||||||||||||||||||||||||| ||  |||||||| |||||||||  |
Sbjct: 2202 agctctggtgctggatcagctgctccatcaagtagtgagcgcaaatgcgtgcagatatta 2143

                          
Query: 659  gcaacatgaagcat 672
            ||| ||||||||||
Sbjct: 2142 gcagcatgaagcat 2129
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  188 bits (95), Expect = 2e-44
 Identities = 191/223 (85%)
 Strand = Plus / Plus

                                                                            
Query: 410      accttctctcttgacacctgtgggcactccatggaatatgtcgcagagcggaattcgtgc 469
                |||||||||||||| |||||||| |||||||| || ||||| ||| |||||||||| |||
Sbjct: 31304167 accttctctcttgaaacctgtggacactccattgagtatgttgcacagcggaattcatgc 31304226

                                                                            
Query: 470      attaccctctcaaaagccgcaccaccatacagcttaaggctggagtggggaggttttaca 529
                ||||| ||||||||||| ||||||||||| |  ||||| ||||||| ||| |||||||||
Sbjct: 31304227 attactctctcaaaagctgcaccaccatataatttaagactggagttgggtggttttaca 31304286

                                                                            
Query: 530      ggaacgctggtgctaggccagttgtcaataccactgtgaatttgctcctcttcagtagtt 589
                || | | |  ||| ||||||| || | |||||||| || || || |||||||||||||||
Sbjct: 31304287 ggcatgttaatgccaggccagctgcctataccactatgcatctgttcctcttcagtagtt 31304346

                                                           
Query: 590      tccccccacacctctggggctggatcagctgctccatcaagta 632
                | |||||| | |||||| |||||||||||||||||||||||||
Sbjct: 31304347 ttcccccatagctctggtgctggatcagctgctccatcaagta 31304389



 Score =  188 bits (95), Expect = 2e-44
 Identities = 155/175 (88%)
 Strand = Plus / Plus

                                                                            
Query: 239      cgctccattgcaaggtcaaataagctttgcaggacaaatgcaagccgatcacatgtagtt 298
                ||||||||||||||||||||||  ||||| || ||||||||||||||||||||||  || 
Sbjct: 31303919 cgctccattgcaaggtcaaatagactttggagaacaaatgcaagccgatcacatgctgta 31303978

                                                                            
Query: 299      tcagtaagaggagcaagccatgatcgtgcagccgcgcgtgctatctcagcagctgcctca 358
                ||  |||| ||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 31303979 tcgataaggggagcaagccatgatcgtgcagctgcacgtgctatctcagctgctgcctca 31304038

                                                                       
Query: 359      gtcatcccactgcttccacctcttccagcatgggcaagtaatatgttcgcaacct 413
                |||| |||||| || ||||||| ||||||||| ||||||| |||||| |||||||
Sbjct: 31304039 gtcaacccactactcccacctcgtccagcatgtgcaagtagtatgtttgcaacct 31304093
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>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0481E12
          Length = 161563

 Score =  188 bits (95), Expect = 2e-44
 Identities = 191/223 (85%)
 Strand = Plus / Plus

                                                                         
Query: 410   accttctctcttgacacctgtgggcactccatggaatatgtcgcagagcggaattcgtgc 469
             |||||||||||||| |||||||| |||||||| || ||||| ||| |||||||||| |||
Sbjct: 58450 accttctctcttgaaacctgtggacactccattgagtatgttgcacagcggaattcatgc 58509

                                                                         
Query: 470   attaccctctcaaaagccgcaccaccatacagcttaaggctggagtggggaggttttaca 529
             ||||| ||||||||||| ||||||||||| |  ||||| ||||||| ||| |||||||||
Sbjct: 58510 attactctctcaaaagctgcaccaccatataatttaagactggagttgggtggttttaca 58569

                                                                         
Query: 530   ggaacgctggtgctaggccagttgtcaataccactgtgaatttgctcctcttcagtagtt 589
             || | | |  ||| ||||||| || | |||||||| || || || |||||||||||||||
Sbjct: 58570 ggcatgttaatgccaggccagctgcctataccactatgcatctgttcctcttcagtagtt 58629

                                                        
Query: 590   tccccccacacctctggggctggatcagctgctccatcaagta 632
             | |||||| | |||||| |||||||||||||||||||||||||
Sbjct: 58630 ttcccccatagctctggtgctggatcagctgctccatcaagta 58672



 Score =  188 bits (95), Expect = 2e-44
 Identities = 155/175 (88%)
 Strand = Plus / Plus

                                                                         
Query: 239   cgctccattgcaaggtcaaataagctttgcaggacaaatgcaagccgatcacatgtagtt 298
             ||||||||||||||||||||||  ||||| || ||||||||||||||||||||||  || 
Sbjct: 58202 cgctccattgcaaggtcaaatagactttggagaacaaatgcaagccgatcacatgctgta 58261

                                                                         
Query: 299   tcagtaagaggagcaagccatgatcgtgcagccgcgcgtgctatctcagcagctgcctca 358
             ||  |||| ||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 58262 tcgataaggggagcaagccatgatcgtgcagctgcacgtgctatctcagctgctgcctca 58321

                                                                    
Query: 359   gtcatcccactgcttccacctcttccagcatgggcaagtaatatgttcgcaacct 413
             |||| |||||| || ||||||| ||||||||| ||||||| |||||| |||||||
Sbjct: 58322 gtcaacccactactcccacctcgtccagcatgtgcaagtagtatgtttgcaacct 58376
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>ref|NM_104193.3| Arabidopsis thaliana ATP binding / GTP binding / GTPase AT1G53140
            mRNA, complete cds
          Length = 2640

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 304  aagaggagcaagccatgatcgtgcagc 330
            |||||||||||||||||| ||||||||
Sbjct: 1551 aagaggagcaagccatgaccgtgcagc 1525



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 383  ccagcatgggcaagtaatatgttcgcaaccttctctcttgacac 426
            |||||||| ||||| |  ||||| || |||||||||||||||||
Sbjct: 1472 ccagcatgagcaagcagaatgtttgctaccttctctcttgacac 1429
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>emb|BX842486.1|CNS0AAKF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH20ZD08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2599

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 304  aagaggagcaagccatgatcgtgcagc 330
            |||||||||||||||||| ||||||||
Sbjct: 1550 aagaggagcaagccatgaccgtgcagc 1524



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 383  ccagcatgggcaagtaatatgttcgcaaccttctctcttgacac 426
            |||||||| ||||| |  ||||| || |||||||||||||||||
Sbjct: 1471 ccagcatgagcaagcagaatgtttgctaccttctctcttgacac 1428
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>gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis thaliana BAC F12M16 from
           chromosome I, complete sequence
          Length = 130235

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 304 aagaggagcaagccatgatcgtgcagc 330
           |||||||||||||||||| ||||||||
Sbjct: 247 aagaggagcaagccatgaccgtgcagc 221
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>gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete
             sequence
          Length = 110611

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 304   aagaggagcaagccatgatcgtgcagc 330
             |||||||||||||||||| ||||||||
Sbjct: 24599 aagaggagcaagccatgaccgtgcagc 24625
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>gb|AC165151.2| Mus musculus BAC clone RP24-77O15 from chromosome 16, complete sequence
          Length = 177446

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 502   cttaaggctggagtggggagg 522
             |||||||||||||||||||||
Sbjct: 70716 cttaaggctggagtggggagg 70696
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>emb|AL583827.7| Human DNA sequence from clone RP11-172F7 on chromosome 9, complete
            sequence
          Length = 174024

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 46   aatataaacaaacaacagaag 66
            |||||||||||||||||||||
Sbjct: 9799 aatataaacaaacaacagaag 9819
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>gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, complete sequence
          Length = 164043

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  tggagtggggaggttttacag 530
            |||||||||||||||||||||
Sbjct: 2400 tggagtggggaggttttacag 2380
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>gb|DQ156349.1| Uncultured marine group II euryarchaeote HF70_39H11 clone fosmid
            HF70_39H11, complete sequence
          Length = 36119

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 59   aacagaagaattgattcaaagggaa 83
            ||||||||||||| |||||||||||
Sbjct: 2042 aacagaagaattggttcaaagggaa 2066
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>emb|BX322786.4| Zebrafish DNA sequence from clone CH211-200L16 in linkage group 5,
             complete sequence
          Length = 15005

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   agtactacacaataataattg 154
             |||||||||||||||||||||
Sbjct: 12741 agtactacacaataataattg 12721
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>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 647     gtgcagatagaagcaacatga 667
               |||||||||||||||||||||
Sbjct: 1666913 gtgcagatagaagcaacatga 1666933
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>gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, complete sequence
          Length = 196086

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   ctcagcagctgcctcagtca 362
             ||||||||||||||||||||
Sbjct: 63313 ctcagcagctgcctcagtca 63332
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>ref|XM_509159.1| PREDICTED: Pan troglodytes similar to 1300003K24Rik protein
           (LOC452010), mRNA
          Length = 1255

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 344 tcagcagctgcctcagtcatccca 367
           |||||||||||||||| |||||||
Sbjct: 925 tcagcagctgcctcagccatccca 948
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>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 159    aataaataaggctagaagcaagat 182
              ||||||||||| ||||||||||||
Sbjct: 349833 aataaataagggtagaagcaagat 349856
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>gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, complete sequence
          Length = 230407

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 195   aataaaaatgccaagtcttacatcttga 222
             ||||||||||||||| ||||||||||||
Sbjct: 84943 aataaaaatgccaag-cttacatcttga 84917
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>ref|XM_864339.1| PREDICTED: Bos taurus similar to R3H domain protein KIAA1002
           (LOC613499), partial mRNA
          Length = 2327

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 344 tcagcagctgcctcagtcatccca 367
           |||||||||||||||| |||||||
Sbjct: 339 tcagcagctgcctcagccatccca 362
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>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence
          Length = 171059

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    ataaacaaacaacagaagaa 68
             ||||||||||||||||||||
Sbjct: 87799 ataaacaaacaacagaagaa 87818
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>gb|AC164554.2| Mus musculus BAC clone RP23-351O14 from chromosome 17, complete
            sequence
          Length = 192632

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   aaacaaacaacagaagaatt 70
            ||||||||||||||||||||
Sbjct: 5791 aaacaaacaacagaagaatt 5810
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>emb|CR392364.6| Zebrafish DNA sequence from clone CH211-230I4 in linkage group 17,
             complete sequence
          Length = 91506

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   aataattggactaataaata 166
             ||||||||||||||||||||
Sbjct: 74572 aataattggactaataaata 74591
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>gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, complete sequence
          Length = 239758

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    ctcagcagctgcctcagtca 362
              ||||||||||||||||||||
Sbjct: 195751 ctcagcagctgcctcagtca 195732
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>gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, complete sequence
          Length = 200289

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   actaataaataaggctagaa 175
             ||||||||||||||||||||
Sbjct: 66440 actaataaataaggctagaa 66421
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>gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, complete sequence
          Length = 184152

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 195   aataaaaatgccaagtcttacatcttga 222
             ||||||||||||||| ||||||||||||
Sbjct: 47006 aataaaaatgccaag-cttacatcttga 46980
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>gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome 1, complete sequence
          Length = 182270

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    aagcaagatgaaccccagca 193
              ||||||||||||||||||||
Sbjct: 158911 aagcaagatgaaccccagca 158930
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>gb|BC112226.1| Homo sapiens R3H domain containing 2, mRNA (cDNA clone
           IMAGE:8327694), partial cds
          Length = 2014

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 344 tcagcagctgcctcagtcatccca 367
           |||||||||||||||| |||||||
Sbjct: 683 tcagcagctgcctcagccatccca 706
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>gb|BC104995.1| Homo sapiens R3H domain containing 2, mRNA (cDNA clone
           IMAGE:8143998), partial cds
          Length = 2020

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 344 tcagcagctgcctcagtcatccca 367
           |||||||||||||||| |||||||
Sbjct: 683 tcagcagctgcctcagccatccca 706
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>gb|BC041857.1| Homo sapiens R3H domain containing 2, mRNA (cDNA clone MGC:43641
            IMAGE:5270511), complete cds
          Length = 3800

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 344  tcagcagctgcctcagtcatccca 367
            |||||||||||||||| |||||||
Sbjct: 1488 tcagcagctgcctcagccatccca 1511
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>emb|CR859659.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2113 (from clone DKFZp469E2113)
          Length = 4076

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 344  tcagcagctgcctcagtcatccca 367
            |||||||||||||||| |||||||
Sbjct: 1792 tcagcagctgcctcagccatccca 1815
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    ctctcaaaagccgcaccacc 495
              ||||||||||||||||||||
Sbjct: 998588 ctctcaaaagccgcaccacc 998607
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>gb|DQ247788.1| Capnodium coffeae isolate AFTOL-ID 939 RNA polymerase II second
           largest subunit (RPB2) gene, partial cds
          Length = 998

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 304 aagaggagcaagccatgatc 323
           ||||||||||||||||||||
Sbjct: 824 aagaggagcaagccatgatc 843
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>gb|AC153924.8| Mus musculus 10 BAC RP23-74P12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 214001

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 46    aatataaacaaacaacagaagaat 69
             ||||||||||||||||| ||||||
Sbjct: 99124 aatataaacaaacaacataagaat 99101
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>dbj|AB178773.1| Lingula anatina mitochondrial cox1, cox2, nad2, nad4L, cob, atp8, atp8,
             atp6, nad6, nad1, nad3, nad5, nad4, cox3 genes, complete
             cds
          Length = 28818

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 576   cctcttcagtagtttccccc 595
             ||||||||||||||||||||
Sbjct: 22438 cctcttcagtagtttccccc 22419
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>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence
          Length = 191499

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   acagaagaattgattcaaag 79
            ||||||||||||||||||||
Sbjct: 9344 acagaagaattgattcaaag 9325
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>gb|AC098657.2| Homo sapiens chromosome 1 clone RP11-339A11, complete sequence
          Length = 158859

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    acagaagaattgattcaaag 79
             ||||||||||||||||||||
Sbjct: 50622 acagaagaattgattcaaag 50603
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>gb|AC024243.8| Homo sapiens BAC clone RP11-528I4 from 4, complete sequence
          Length = 163857

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    attcaaagggaattgattca 91
             ||||||||||||||||||||
Sbjct: 45583 attcaaagggaattgattca 45602
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>gb|AC010430.5| Homo sapiens chromosome 5 clone CTD-2201D24, complete sequence
          Length = 57142

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    acaaacaacagaagaattga 72
             ||||||||||||||||||||
Sbjct: 43437 acaaacaacagaagaattga 43456
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>gb|AC008504.7| Homo sapiens chromosome 5 clone CTC-444E21, complete sequence
          Length = 74253

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    acaaacaacagaagaattga 72
             ||||||||||||||||||||
Sbjct: 55808 acaaacaacagaagaattga 55827
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>ref|NM_014925.2| Homo sapiens R3H domain containing 2 (R3HDM2), mRNA
          Length = 3823

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 344  tcagcagctgcctcagtcatccca 367
            |||||||||||||||| |||||||
Sbjct: 1509 tcagcagctgcctcagccatccca 1532
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>gb|L77573.1|AEOALT Aeromonas hydrophila cytotonic enterotoxin (alt) gene, complete cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cacctcttccagcatgggca 394
           ||||||||||||||||||||
Sbjct: 375 cacctcttccagcatgggca 356
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>gb|AC137834.9| Homo sapiens 12 BAC RP11-123K3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 344   tcagcagctgcctcagtcatccca 367
             |||||||||||||||| |||||||
Sbjct: 23055 tcagcagctgcctcagccatccca 23078
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>gb|AC010132.5|AC010132 Homo sapiens BAC clone RP11-111K18 from 7p11.2-p2, complete sequence
          Length = 166680

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   aggctagaagcaagatgaac 186
             ||||||||||||||||||||
Sbjct: 85964 aggctagaagcaagatgaac 85983
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>gb|AC083973.14| Homo sapiens chromosome 8, clone RP11-231D20, complete sequence
          Length = 188573

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 165    taaggctagaagcaagatgaaccc 188
              ||||||||||||||||||| ||||
Sbjct: 118725 taaggctagaagcaagatggaccc 118748
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>emb|BX545918.4| Zebrafish DNA sequence from clone DKEYP-22F11 in linkage group 8,
              complete sequence
          Length = 149121

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 37     ttgattctgaatataaacaaacaa 60
              |||||||||||||||| |||||||
Sbjct: 103833 ttgattctgaatataagcaaacaa 103856
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>dbj|AB023219.1| Homo sapiens mRNA for KIAA1002 protein, partial cds
          Length = 4331

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 344  tcagcagctgcctcagtcatccca 367
            |||||||||||||||| |||||||
Sbjct: 2033 tcagcagctgcctcagccatccca 2056
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>gb|AC147874.3| Monodelphis domestica clone VMRC6-639B11, complete sequence
          Length = 132290

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 150    aattggactaataaataaggctagaagc 177
              ||||| ||||||||||||| ||||||||
Sbjct: 124116 aattgaactaataaataagactagaagc 124143
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>emb|BX663503.10| Zebrafish DNA sequence from clone CH211-136A13 in linkage group 18,
              complete sequence
          Length = 176960

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ctgaatataaacaaacaaca 62
              ||||||||||||||||||||
Sbjct: 175703 ctgaatataaacaaacaaca 175684
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>gb|AF092033.1|AF092033 Aeromonas hydrophila phospholipase A1 (pla) gene, complete cds
          Length = 2602

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 375  cacctcttccagcatgggca 394
            ||||||||||||||||||||
Sbjct: 1471 cacctcttccagcatgggca 1452
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>gb|DQ302132.1| Aeromonas hydrophila strain HA7 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1107

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cacctcttccagcatgggca 394
           ||||||||||||||||||||
Sbjct: 270 cacctcttccagcatgggca 251
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>gb|DQ302131.1| Aeromonas hydrophila strain GA1 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1104

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cacctcttccagcatgggca 394
           ||||||||||||||||||||
Sbjct: 270 cacctcttccagcatgggca 251
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>gb|DQ302130.1| Aeromonas hydrophila strain CA1 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1104

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cacctcttccagcatgggca 394
           ||||||||||||||||||||
Sbjct: 270 cacctcttccagcatgggca 251
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>gb|DQ302128.1| Aeromonas hydrophila strain BA16 cytotonic enterotoxin (alt) gene,
           complete cds
          Length = 1107

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cacctcttccagcatgggca 394
           ||||||||||||||||||||
Sbjct: 270 cacctcttccagcatgggca 251
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>gb|AC154589.3| Mus musculus BAC clone RP23-367D5 from chromosome 14, complete sequence
          Length = 205889

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   cccccacacctctggggctg 611
             ||||||||||||||||||||
Sbjct: 80918 cccccacacctctggggctg 80937
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 315    gccatgatcgtgcagccgcgcgtg 338
              ||||||| ||||||||||||||||
Sbjct: 146627 gccatgaacgtgcagccgcgcgtg 146650
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>emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in linkage group 2, complete
              sequence
          Length = 214484

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 144    aataataattggactaataaataa 167
              |||||||||| |||||||||||||
Sbjct: 187706 aataataattcgactaataaataa 187683
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>gb|AC119921.12| Mus musculus chromosome 12, clone RP24-252B23, complete sequence
          Length = 162290

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    agcaaaataaaaatgccaag 209
              ||||||||||||||||||||
Sbjct: 124719 agcaaaataaaaatgccaag 124738
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>gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complete sequence
          Length = 176981

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aagcaagatgaaccccagca 193
             ||||||||||||||||||||
Sbjct: 51104 aagcaagatgaaccccagca 51123
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>emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chromosome 17, complete
              sequence
          Length = 240447

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     aaacaaacaacagaagaatt 70
              ||||||||||||||||||||
Sbjct: 177066 aaacaaacaacagaagaatt 177047
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>emb|AL935048.7| Zebrafish DNA sequence from clone CH211-168M7, complete sequence
          Length = 137662

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   aataataattggactaataaataa 167
             ||||||||||||||||| ||||||
Sbjct: 62975 aataataattggactaaaaaataa 62998
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>gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome 14, complete sequence
          Length = 245591

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 592    cccccacacctctggggctg 611
              ||||||||||||||||||||
Sbjct: 179989 cccccacacctctggggctg 180008
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 150     aattggactaataaataaggctagaagc 177
               ||||| ||||||||||||| ||||||||
Sbjct: 1168648 aattgaactaataaataagactagaagc 1168675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,151,925
Number of Sequences: 3902068
Number of extensions: 8151925
Number of successful extensions: 139504
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139278
Number of HSP's gapped (non-prelim): 225
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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