ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11b19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein 29 3.7
2VDH_STRFR (P40176) Valine dehydrogenase (EC 1.4.1.-) (ValDH) 28 8.3

>PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein|
          Length = 1589

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 64  TNRHGTPSSSRRNEKT-DTPPLITANTLPTHTLLRFDAHTMHXIXRRPGPGXSWAS 228
           ++RHGTP + RR   T  TP   +A + P         HT   + +   PG   A+
Sbjct: 140 SHRHGTPPTGRRQTHTPSTPNRPSAPSTPNTNCNSIARHTSLTLEKAQNPGQQVAA 195



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>VDH_STRFR (P40176) Valine dehydrogenase (EC 1.4.1.-) (ValDH)|
          Length = 370

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 68  TDTAHPRLADETKRL-TLHHSSQQTRYRLILCFD 166
           TD +HP  AD+   L TL  S Q    R++LC D
Sbjct: 1   TDASHPTAADDLGALSTLFRSEQGGHERVLLCQD 34


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,485,263
Number of Sequences: 219361
Number of extensions: 443561
Number of successful extensions: 1143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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