>ZEP1_HUMAN (P15822) Zinc finger protein 40 (Human immunodeficiency virus type|
           I enhancer-binding protein 1) (HIV-EP1) (Major
           histocompatibility complex-binding protein 1) (MBP-1)
           (Positive regulatory domain II-binding factor 1)
           (PRDII-BF1)
          Length = 2717

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +3

Query: 159 QSHGEIGGPKRAIPASYTTHKSAFSRQPCGNK*QEPANANDLYNSQSAHVQLINRHSRTL 338
           Q+  E+    ++   SYT H SA  +   G       +A+ LY+     V   N+H++ L
Sbjct: 246 QTSQELVAESQSSCTSYTVHMSAAQKNEQGAM----QSASHLYHQHEHFVPKSNQHNQQL 301

Query: 339 CGCSG 353
            GCSG
Sbjct: 302 PGCSG 306

>DNMT1_MOUSE (P13864) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)|
           (DNA methyltransferase MmuI) (DNA MTase MmuI) (MCMT)
           (M.MmuI) (Met-1)
          Length = 1620

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -3

Query: 550 AEPELPAPTRIEAANSDRGKQK----TRKKAPTQTLPILTRTPRR 428
           AEPE  AP   E  + D  ++K    TRKK  + T+P+ +R+ R+
Sbjct: 299 AEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERK 343

>PACC_MAGGR (Q52B93) pH-response transcription factor pacC/RIM101|
          Length = 559

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 196 SQQATLHTNQHSAGSLAGTSNRNQPTPTISTTASQPMFN*SIVIR 330
           +QQA   T   +  S +  SN N P P+ STTA+    + S++ R
Sbjct: 11  AQQAPATTQAPTTESSSSNSNGNTPAPSTSTTATSQSSDDSLICR 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,163,559
Number of Sequences: 219361
Number of extensions: 1206345
Number of successful extensions: 3190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3181
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)