ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10m07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468610.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1265 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 355 acggcgttcagctggaaagaaaccctctg 383 |||||||| |||||||||||||||||||| Sbjct: 704 acggcgttgagctggaaagaaaccctctg 676 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 cagtcagcccatgttcaactgatc 317 |||| ||||||||||||||||||| Sbjct: 756 cagttagcccatgttcaactgatc 733
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 355 acggcgttcagctggaaagaaaccctctg 383 |||||||| |||||||||||||||||||| Sbjct: 16611166 acggcgttgagctggaaagaaaccctctg 16611138 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 cagtcagcccatgttcaactgatc 317 |||| ||||||||||||||||||| Sbjct: 16611218 cagttagcccatgttcaactgatc 16611195
>gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genomic sequence, complete sequence Length = 133843 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 355 acggcgttcagctggaaagaaaccctctg 383 |||||||| |||||||||||||||||||| Sbjct: 42877 acggcgttgagctggaaagaaaccctctg 42905 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cagtcagcccatgttcaactgatc 317 |||| ||||||||||||||||||| Sbjct: 42825 cagttagcccatgttcaactgatc 42848
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 355 acggcgttcagctggaaagaaaccctctg 383 |||||||| |||||||||||||||||||| Sbjct: 16604799 acggcgttgagctggaaagaaaccctctg 16604771 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 cagtcagcccatgttcaactgatc 317 |||| ||||||||||||||||||| Sbjct: 16604851 cagttagcccatgttcaactgatc 16604828
>emb|AL080251.23|HSDJ93P18 Human DNA sequence from clone RP1-93P18 on chromosome 1p35.2-36.23 Contains the 5' end of the ALDH4A1 gene for aldehyde dehydrogenase 4 family, member A1, a novel gene and a CpG island, complete sequence Length = 103216 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 485 cttctgcttccctcggtctgagt 507 ||||||||||||||||||||||| Sbjct: 35311 cttctgcttccctcggtctgagt 35289
>dbj|AP003159.1| Homo sapiens genomic DNA, chromosome 1p36 clone:1024F16, complete sequence Length = 113733 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 485 cttctgcttccctcggtctgagt 507 ||||||||||||||||||||||| Sbjct: 36733 cttctgcttccctcggtctgagt 36711
>gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana BAC F9C16 from chromosome I, complete sequence Length = 122543 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 135 catggtgaattattaacttatg 156 |||||||||||||||||||||| Sbjct: 51335 catggtgaattattaacttatg 51314 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 135 catggtgaattattaacttatg 156 |||||||||||||||||||||| Sbjct: 44233 catggtgaattattaacttatg 44254
>emb|AL645643.7| Mouse DNA sequence from clone RP23-253F13 on chromosome 13 Contains part of the Gmds gene for GDP-mannose 4, 6-dehydratase, complete sequence Length = 185384 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 caagtaacaggaaccagccaa 271 ||||||||||||||||||||| Sbjct: 127587 caagtaacaggaaccagccaa 127567
>dbj|AK052819.1| Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN full-length enriched library, clone:D730032J17 product:unclassifiable, full insert sequence Length = 4611 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tacacacaaatcagcattcagcagg 236 ||||||||| ||||||||||||||| Sbjct: 4491 tacacacaattcagcattcagcagg 4515
>gb|AC132607.4| Mus musculus BAC clone RP23-447F22 from 12, complete sequence Length = 194101 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 212 tacacacaaatcagcattcagcagg 236 ||||||||| ||||||||||||||| Sbjct: 38893 tacacacaattcagcattcagcagg 38869
>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence Length = 193547 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tacacacaaatcagcattcagcagg 236 ||||||||| ||||||||||||||| Sbjct: 40662 tacacacaattcagcattcagcagg 40686
>ref|NM_120271.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT5G01930 mRNA, complete cds Length = 1479 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ctcgttgcccctctgatcct 430 |||||||||||||||||||| Sbjct: 690 ctcgttgcccctctgatcct 709
>ref|NM_120270.2| Arabidopsis thaliana STN8; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase AT5G01920 (STN8) mRNA, complete cds Length = 3466 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ctcgttgcccctctgatcct 430 |||||||||||||||||||| Sbjct: 2537 ctcgttgcccctctgatcct 2518
>ref|XM_362127.1| Magnaporthe grisea 70-15 predicted protein (MG04572.4) partial cds Length = 705 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 agccaacgccaacgatctct 285 |||||||||||||||||||| Sbjct: 141 agccaacgccaacgatctct 160
>gb|BT011805.1| Arabidopsis thaliana At5g01930 mRNA sequence Length = 1269 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ctcgttgcccctctgatcct 430 |||||||||||||||||||| Sbjct: 581 ctcgttgcccctctgatcct 600
>gb|BC009310.2| Homo sapiens hypothetical protein MGC11332, mRNA (cDNA clone IMAGE:4101451), partial cds Length = 1720 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 ctggccctggctctgaggctggtg 404 ||||||||||||||| |||||||| Sbjct: 273 ctggccctggctctgcggctggtg 250
>emb|CR717515.2|CNS0GGKX Tetraodon nigroviridis full-length cDNA Length = 1315 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 398 gctggtgctgctgctcgttgcccc 421 |||||||||||||||||| ||||| Sbjct: 16 gctggtgctgctgctcgtggcccc 39
>ref|XM_764300.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_457_19660_21768) partial mRNA Length = 2109 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ccctctggccctggctctga 396 |||||||||||||||||||| Sbjct: 1477 ccctctggccctggctctga 1496
>gb|AC008060.5| Homo sapiens PAC clone RP5-912I13 from 7, complete sequence Length = 161566 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 cctctggccctggctctgaggctg 401 |||| ||||||||||||||||||| Sbjct: 44120 cctcaggccctggctctgaggctg 44143
>emb|AL033517.1|HS279I9 Human DNA sequence from clone RP1-279I9 on chromosome 6p24.1-25.3 Contains part of the GMDS gene for GDP-mannose 4 6-dehydratase, complete sequence Length = 111311 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 agtaacaggaaccagccaac 272 |||||||||||||||||||| Sbjct: 95860 agtaacaggaaccagccaac 95879
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7 Length = 349652 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 gcagcgtctgcgttggcgcc 473 |||||||||||||||||||| Sbjct: 338683 gcagcgtctgcgttggcgcc 338702
>emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project) Length = 96565 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ctcgttgcccctctgatcct 430 |||||||||||||||||||| Sbjct: 86599 ctcgttgcccctctgatcct 86580
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ggctgcagcggccacggcgt 361 |||||||||||||||||||| Sbjct: 2308389 ggctgcagcggccacggcgt 2308370
>emb|BX005457.10| Zebrafish DNA sequence from clone DKEY-216J10 in linkage group 14, complete sequence Length = 70896 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 388 tggctctgaggctggtgctgctgc 411 |||||||| ||||||||||||||| Sbjct: 51325 tggctctgtggctggtgctgctgc 51348
>dbj|AK075376.1| Homo sapiens cDNA PSEC0066 fis, clone NT2RP2001087, weakly similar to TETRACYCLINE RESISTANCE PROTEIN Length = 2682 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 ctggccctggctctgaggctggtg 404 ||||||||||||||| |||||||| Sbjct: 823 ctggccctggctctgcggctggtg 800
>emb|CR599593.1| full-length cDNA clone CS0DA008YB04 of Neuroblastoma of Homo sapiens (human) Length = 1470 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 ctggccctggctctgaggctggtg 404 ||||||||||||||| |||||||| Sbjct: 815 ctggccctggctctgcggctggtg 792
>gb|AC010616.5|AC010616 Homo sapiens chromosome 19 clone CTD-2575K13, complete sequence Length = 171849 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 ctggctctgaggctggtgctgctg 410 |||| ||||||||||||||||||| Sbjct: 136145 ctgggtctgaggctggtgctgctg 136122
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cgccttcttcctcgtcttct 489 |||||||||||||||||||| Sbjct: 21349886 cgccttcttcctcgtcttct 21349867 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cgccttcttcctcgtcttct 489 |||||||||||||||||||| Sbjct: 21316684 cgccttcttcctcgtcttct 21316665
>gb|BT005831.1| Arabidopsis thaliana At5g01930 gene, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ctcgttgcccctctgatcct 430 |||||||||||||||||||| Sbjct: 659 ctcgttgcccctctgatcct 678
>gb|AC135724.9| Homo sapiens chromosome 17, clone CTD-2538H15, complete sequence Length = 160515 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ctggccctggctctgaggct 400 |||||||||||||||||||| Sbjct: 60977 ctggccctggctctgaggct 60958
>ref|NM_032718.2| Homo sapiens hypothetical protein MGC11332 (MGC11332), mRNA Length = 2682 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 ctggccctggctctgaggctggtg 404 ||||||||||||||| |||||||| Sbjct: 823 ctggccctggctctgcggctggtg 800
>gb|AC055858.18| Homo sapiens chromosome 17, clone RP11-682M7, complete sequence Length = 167395 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ccctggctctgaggctggtg 404 |||||||||||||||||||| Sbjct: 88830 ccctggctctgaggctggtg 88849
>gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, complete sequence Length = 179084 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 tggccctggctctgaggctg 401 |||||||||||||||||||| Sbjct: 82651 tggccctggctctgaggctg 82670
>gb|AC007239.3| Homo sapiens BAC clone RP11-83A12 from 2, complete sequence Length = 139391 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 ctggccctggctctgaggctggtg 404 ||||||||||||||| |||||||| Sbjct: 128182 ctggccctggctctgcggctggtg 128205
>dbj|AK117124.1| Arabidopsis thaliana At5g01920 mRNA for unknown protein, complete cds, clone: RAFL16-66-C16 Length = 3489 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ctcgttgcccctctgatcct 430 |||||||||||||||||||| Sbjct: 2560 ctcgttgcccctctgatcct 2541
>gb|AC004526.1|AC004526 Homo sapiens chromosome 17, Neurofibromatosis 1 locus, complete sequence Length = 297898 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ctggccctggctctgaggct 400 |||||||||||||||||||| Sbjct: 217687 ctggccctggctctgaggct 217706
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cgccttcttcctcgtcttct 489 |||||||||||||||||||| Sbjct: 21276105 cgccttcttcctcgtcttct 21276086 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cgccttcttcctcgtcttct 489 |||||||||||||||||||| Sbjct: 21242903 cgccttcttcctcgtcttct 21242884
>emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103_B10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 95132 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 cgccttcttcctcgtcttct 489 |||||||||||||||||||| Sbjct: 44594 cgccttcttcctcgtcttct 44613 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 cgccttcttcctcgtcttct 489 |||||||||||||||||||| Sbjct: 11392 cgccttcttcctcgtcttct 11411
>gb|AC147248.5| Mus musculus BAC clone RP24-83D19 from 1, complete sequence Length = 176741 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 caatggacagaaactaatca 64 |||||||||||||||||||| Sbjct: 43572 caatggacagaaactaatca 43591
>gb|AC129596.3| Mus musculus BAC clone RP23-261I2 from 1, complete sequence Length = 162998 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 caatggacagaaactaatca 64 |||||||||||||||||||| Sbjct: 105115 caatggacagaaactaatca 105134
>gb|BC006242.2| Homo sapiens hypothetical protein MGC11332, mRNA (cDNA clone MGC:11332 IMAGE:3952602), complete cds Length = 1532 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 ctggccctggctctgaggctggtg 404 ||||||||||||||| |||||||| Sbjct: 826 ctggccctggctctgcggctggtg 803
>emb|AL805954.9| Mouse DNA sequence from clone RP23-277N22 on chromosome 4, complete sequence Length = 127548 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ccctttgctgaagcatcagc 128 |||||||||||||||||||| Sbjct: 100326 ccctttgctgaagcatcagc 100307
>emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chromosome 4, complete sequence Length = 214061 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 acactacacacaaatcagca 227 |||||||||||||||||||| Sbjct: 30910 acactacacacaaatcagca 30891 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,873,474 Number of Sequences: 3902068 Number of extensions: 4873474 Number of successful extensions: 101712 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101470 Number of HSP's gapped (non-prelim): 242 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
