ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11b02 |
|---|---|
| Clone Library Name | barley_pub |
>RL3_ORYSA (P35684) 60S ribosomal protein L3| Length = 388 Score = 223 bits (569), Expect = 2e-58 Identities = 107/118 (90%), Positives = 110/118 (93%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQNG HHR MNKKVYKIGK GQ +H A TEFDRTEKDITPMGGFPHYGVVK DYLMIKG Sbjct: 270 GQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKG 329 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF+DTSSKFGHGRFQTTDEKQRF+GKLK Sbjct: 330 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 387
>RL3B_ARATH (P22738) 60S ribosomal protein L3| Length = 389 Score = 204 bits (519), Expect = 1e-52 Identities = 93/116 (80%), Positives = 104/116 (89%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQNG HHR MNKKVY++GKVGQ TH A TE+DRTEKDITPMGGFPHYG+VK DYLMIKG Sbjct: 270 GQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKG 329 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGK 148 CCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKF+D +S GHGRFQT+ EK +FYG+ Sbjct: 330 CCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 385
>RL3A_ARATH (P17094) 60S ribosomal protein L3| Length = 388 Score = 199 bits (505), Expect = 5e-51 Identities = 91/117 (77%), Positives = 103/117 (88%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQNG HHR +NKK+Y++GKVG H A TE+DRTEKD+TPMGGFPHYG+VK DYLMIKG Sbjct: 270 GQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKG 329 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 145 CCVGPKKRVVTLRQSLL QTSRLALEEIKLKF+DT+S FGHGRFQT+ EK RFY ++ Sbjct: 330 CCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 386
>RL3_DROME (O16797) 60S ribosomal protein L3| Length = 415 Score = 159 bits (401), Expect = 5e-39 Identities = 78/125 (62%), Positives = 92/125 (73%), Gaps = 7/125 (5%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHD-------AXTEFDRTEKDITPMGGFPHYGVVKA 337 GQ G HHR +NKK+Y+IG G T D A TE+D T+K ITPMGGFPHYG V Sbjct: 269 GQKGYHHRTEINKKIYRIG-AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNN 327 Query: 336 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 157 D++MIKGCC+G KKR++TLR+SLLK T R ALE+IKLKF+DTSSK GHGRFQT +K F Sbjct: 328 DFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAF 387 Query: 156 YGKLK 142 G LK Sbjct: 388 MGPLK 392
>RL3_TOXCA (P49149) 60S ribosomal protein L3| Length = 401 Score = 154 bits (388), Expect = 2e-37 Identities = 71/121 (58%), Positives = 91/121 (75%), Gaps = 3/121 (2%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGK---VGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLM 325 GQ G HHR +NKK+Y++GK + + T++D TEK + PMGGFPHYG+V D++M Sbjct: 269 GQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVM 328 Query: 324 IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 145 I+GCCVG KKR +TLR+SL+ QT R A E+I LK++DTSSKFGHGRFQT EK+ F GKL Sbjct: 329 IRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKL 388 Query: 144 K 142 K Sbjct: 389 K 389
>RL3_CAEEL (P50880) 60S ribosomal protein L3| Length = 401 Score = 152 bits (384), Expect = 5e-37 Identities = 71/121 (58%), Positives = 92/121 (76%), Gaps = 3/121 (2%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVG---QXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLM 325 GQ G HHR +N K+Y+IGK + ++ TEFD T+K ITPMGGFP YG+V DY+M Sbjct: 270 GQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIM 329 Query: 324 IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 145 ++G +GPKKR++TLR+SL+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKL Sbjct: 330 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 389 Query: 144 K 142 K Sbjct: 390 K 390
>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3| Length = 401 Score = 149 bits (376), Expect = 4e-36 Identities = 70/121 (57%), Positives = 91/121 (75%), Gaps = 3/121 (2%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVG---QXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLM 325 GQ G HHR +N K+Y+IGK + ++ TEFD T+K I PMGGFP YG+V DY+M Sbjct: 270 GQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVM 329 Query: 324 IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 145 ++G +GPKKR++TLR+SL+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKL Sbjct: 330 LRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 389 Query: 144 K 142 K Sbjct: 390 K 390
>RL3_ASHGO (Q759R7) 60S ribosomal protein L3| Length = 388 Score = 148 bits (373), Expect = 9e-36 Identities = 74/118 (62%), Positives = 87/118 (73%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQNG HHR +N KVY+IGK G + A TEFDRT+K ITPMGGF HYG V D++M+KG Sbjct: 269 GQNGYHHRTSINHKVYRIGKGGDEGN-AATEFDRTKKTITPMGGFVHYGAVNNDFVMVKG 327 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 G +KRVVTLR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 328 SIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385
>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)| Length = 402 Score = 147 bits (371), Expect = 2e-35 Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 6/124 (4%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIG-----KVGQXT-HDAXTEFDRTEKDITPMGGFPHYGVVKAD 334 GQ G HHR +NKK+YKIG K G+ ++A T++D ++K I P+GGF HYG V D Sbjct: 269 GQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTND 328 Query: 333 YLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFY 154 ++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 329 FIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFM 388 Query: 153 GKLK 142 G LK Sbjct: 389 GPLK 392
>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)| Length = 402 Score = 147 bits (371), Expect = 2e-35 Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 6/124 (4%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIG-----KVGQXT-HDAXTEFDRTEKDITPMGGFPHYGVVKAD 334 GQ G HHR +NKK+YKIG K G+ ++A T++D ++K I P+GGF HYG V D Sbjct: 269 GQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTND 328 Query: 333 YLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFY 154 ++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 329 FIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFM 388 Query: 153 GKLK 142 G LK Sbjct: 389 GPLK 392
>RL3_BOVIN (P39872) 60S ribosomal protein L3| Length = 402 Score = 147 bits (371), Expect = 2e-35 Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 6/124 (4%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIG-----KVGQXT-HDAXTEFDRTEKDITPMGGFPHYGVVKAD 334 GQ G HHR +NKK+YKIG K G+ ++A T++D ++K I P+GGF HYG V D Sbjct: 269 GQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTND 328 Query: 333 YLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFY 154 ++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 329 FVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFM 388 Query: 153 GKLK 142 G LK Sbjct: 389 GPLK 392
>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3| Length = 402 Score = 147 bits (370), Expect = 2e-35 Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 6/124 (4%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIG-----KVGQXT-HDAXTEFDRTEKDITPMGGFPHYGVVKAD 334 GQ G HHR +NKK+YKIG K G+ ++A T++D ++K I P+GGF HYG V D Sbjct: 269 GQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTND 328 Query: 333 YLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFY 154 ++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 329 FVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFM 388 Query: 153 GKLK 142 G LK Sbjct: 389 GPLK 392
>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)| (TARBP-B) Length = 402 Score = 147 bits (370), Expect = 2e-35 Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 6/124 (4%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIG-----KVGQXT-HDAXTEFDRTEKDITPMGGFPHYGVVKAD 334 GQ G HHR +NKK+YKIG K G+ ++A T++D ++K I P+GGF HYG V D Sbjct: 269 GQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTND 328 Query: 333 YLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFY 154 ++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F Sbjct: 329 FVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFM 388 Query: 153 GKLK 142 G LK Sbjct: 389 GPLK 392
>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like| Length = 406 Score = 145 bits (367), Expect = 5e-35 Identities = 72/125 (57%), Positives = 88/125 (70%), Gaps = 7/125 (5%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHD-------AXTEFDRTEKDITPMGGFPHYGVVKA 337 GQ G HHR +NKK+Y+IG+ G D A T +D T+K ITP+GGFPHYG V Sbjct: 269 GQKGYHHRTELNKKIYRIGR-GLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNN 327 Query: 336 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 157 D++M+KGC G KKRV+TLR+SLL SR ALE I+LKF+DT+SKFGHGRFQT EK+ F Sbjct: 328 DFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAF 387 Query: 156 YGKLK 142 G K Sbjct: 388 MGPQK 392
>RL3_DICDI (P34113) 60S ribosomal protein L3| Length = 397 Score = 144 bits (362), Expect = 2e-34 Identities = 68/122 (55%), Positives = 87/122 (71%), Gaps = 4/122 (3%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKV----GQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYL 328 GQ G HHR NKK+Y+IG+ G+ TEFD TEK I PMGGF HYG+VK ++L Sbjct: 270 GQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFL 329 Query: 327 MIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGK 148 M+KGC GP+KR +TLR+S+ QT R ALE+I LKF+DTSSKFGHG QT ++K +++G Sbjct: 330 MLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGV 389 Query: 147 LK 142 K Sbjct: 390 KK 391
>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3| Length = 387 Score = 143 bits (361), Expect = 2e-34 Identities = 70/118 (59%), Positives = 86/118 (72%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR +N KVY++GK G +A TEFDRT+K ITPMGGF HYG + D++++KG Sbjct: 268 GQRGYHHRTSINHKVYRVGK-GDDEANAATEFDRTKKTITPMGGFVHYGAINNDFVILKG 326 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 G +KRVVTLR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 327 SIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of| killer protein 8) (Trichodermin resistance protein) Length = 386 Score = 143 bits (360), Expect = 3e-34 Identities = 68/118 (57%), Positives = 85/118 (72%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R +N K+Y++GK G + T FDRT+K ITPMGGF HYG +K D++M+KG Sbjct: 267 GQRGYHSRTSINHKIYRVGK-GDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKG 325 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 C G +KR+VTLR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 326 CIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 383
>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like| Length = 406 Score = 142 bits (358), Expect = 5e-34 Identities = 70/125 (56%), Positives = 87/125 (69%), Gaps = 7/125 (5%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHD-------AXTEFDRTEKDITPMGGFPHYGVVKA 337 GQ G HHR +NKK+++IG+ G D A T +D T K ITP+GGFPHYG V Sbjct: 269 GQKGYHHRTELNKKIFRIGR-GPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNN 327 Query: 336 DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRF 157 D++M+KGC G KKRV+TLR+SLL SR A+E I+LKF+DT+SKFGHGRFQT EK+ F Sbjct: 328 DFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAF 387 Query: 156 YGKLK 142 G K Sbjct: 388 MGPQK 392
>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3| Length = 387 Score = 141 bits (356), Expect = 9e-34 Identities = 70/118 (59%), Positives = 85/118 (72%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR +N K+Y+IGK G +A T FDRT+K I PMGGF HYG+V D++M+KG Sbjct: 268 GQRGYHHRTSINHKIYRIGK-GDDEGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKG 326 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 G KKRVVTLR+SL TSR A+EE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 327 SIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384
>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)| Length = 392 Score = 139 bits (351), Expect = 3e-33 Identities = 69/118 (58%), Positives = 87/118 (73%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR N KV++IGK G +A T+FD ++K ITPMGGF YG VK DY+M+KG Sbjct: 269 GQMGYHHRTSCNHKVFRIGK-GSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKG 327 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 G KKRV+TLR++L QTSR A E+++LK++DTSSKFGHG FQT +EK+ F G LK Sbjct: 328 SVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385
>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3| Length = 389 Score = 137 bits (344), Expect = 2e-32 Identities = 67/118 (56%), Positives = 83/118 (70%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQNG HHR +N KVY++G G + A TEFDRT+K I PMGGF YG VK D++++KG Sbjct: 268 GQNGFHHRTSINHKVYRVGSAGDESSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKG 326 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 G KKR+VT+R+SL TSR A E + LK++DT+SKFG GRFQT EK F G LK Sbjct: 327 SIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B| Length = 387 Score = 135 bits (341), Expect = 5e-32 Identities = 67/118 (56%), Positives = 84/118 (71%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 G G HR +N K+Y+IG G +A T+FD TEK ITPMGGF YGVV+ D++M+ G Sbjct: 267 GNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNG 325 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 GP KRV+TLR+SLL TSR ALE + LK++DT+SKFGHGRFQT E ++F G LK Sbjct: 326 ATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A| Length = 387 Score = 135 bits (341), Expect = 5e-32 Identities = 67/118 (56%), Positives = 84/118 (71%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 G G HR +N K+Y+IG G +A T+FD TEK ITPMGGF YGVV+ D++M+ G Sbjct: 267 GNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNG 325 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 GP KRV+TLR+SLL TSR ALE + LK++DT+SKFGHGRFQT E ++F G LK Sbjct: 326 ATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3| Length = 383 Score = 135 bits (340), Expect = 6e-32 Identities = 70/118 (59%), Positives = 85/118 (72%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK+VY IG + + TEFD TEK I+PMGGFPHYG V+ D++M+KG Sbjct: 264 GQMGFHRRTEKNKRVYMIGN---GSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKG 320 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 VG +KRVVTLR+SLL+Q A EE+ +KFVDTSSK GHGRFQT+ EK+ FYG K Sbjct: 321 AVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARK 375
>RL3_NEUCR (P59671) 60S ribosomal protein L3| Length = 392 Score = 135 bits (340), Expect = 6e-32 Identities = 66/118 (55%), Positives = 85/118 (72%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR +N K+Y+IGK G A TE D T+K ITPMGGF YG + D++M+KG Sbjct: 269 GQAGYHHRTSVNHKIYRIGK-GDAEDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKG 327 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 142 G KKRV+TLR+S+ TSR ALE+++LK++DTSS+FGHG FQT EK++F G LK Sbjct: 328 SVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385
>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P| Length = 365 Score = 76.6 bits (187), Expect = 3e-14 Identities = 36/98 (36%), Positives = 59/98 (60%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR +NK++ IG+ G+ D + TE +ITP GGFPHYG+V++D++MI G Sbjct: 272 GQMGFHHRTELNKRLIAIGENGKLKLD-----ENTEIEITPKGGFPHYGIVRSDFMMIAG 326 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 202 G KR++ +R ++ + ++ ++ +V SK Sbjct: 327 SVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364
>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P| Length = 346 Score = 75.9 bits (185), Expect = 6e-14 Identities = 37/98 (37%), Positives = 57/98 (58%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR NK++ IG+ G+ D E +ITP GGFPHYG+V++D+LMI+G Sbjct: 254 GQMGFHHRTEFNKRLIAIGENGKLV------LDGNEIEITPKGGFPHYGIVRSDFLMIEG 307 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 202 G KR++ +R ++ + +E ++ +V SK Sbjct: 308 TIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P| Length = 361 Score = 74.3 bits (181), Expect = 2e-13 Identities = 35/98 (35%), Positives = 57/98 (58%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR +NK++ IG+ G+ D E +ITP GGFPHYG+V++D++MI G Sbjct: 269 GQMGFHHRTELNKRLIAIGENGKLV------IDGNEIEITPKGGFPHYGIVRSDFMMIAG 322 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 202 G KR++ +R ++ + ++ ++ +V SK Sbjct: 323 SVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360
>RL3_PYRHO (O59418) 50S ribosomal protein L3P| Length = 362 Score = 73.9 bits (180), Expect = 2e-13 Identities = 35/98 (35%), Positives = 56/98 (57%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G HHR +NK++ IG+ G+ D E +ITP GGFPHYG+V+ D++MI G Sbjct: 270 GQMGFHHRTELNKRLIAIGENGKLV------IDGNEIEITPKGGFPHYGIVRGDFMMIAG 323 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 202 G KR++ +R ++ + ++ ++ +V SK Sbjct: 324 SVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361
>RL3_METJA (P54014) 50S ribosomal protein L3P| Length = 335 Score = 69.7 bits (169), Expect = 4e-12 Identities = 37/100 (37%), Positives = 56/100 (56%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG G +ITP GGF HYGV++ +Y+++KG Sbjct: 251 GQMGYHQRTEYNKRILKIGNNGD--------------EITPKGGFLHYGVIRNNYVVLKG 296 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 GP KR++ LR+++ Q + + EI ++ T+SK G Sbjct: 297 SVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQG 334
>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P| Length = 337 Score = 65.9 bits (159), Expect = 6e-11 Identities = 35/100 (35%), Positives = 53/100 (53%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG G+ ++TP GGF +YG+V+ DY++IKG Sbjct: 254 GQMGYHQRTEFNKRILKIGSDGE--------------EVTPEGGFINYGLVRGDYILIKG 299 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 GP KR++ LR + + + L E + ++ SK G Sbjct: 300 SVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
>RL3_METMA (Q8PV50) 50S ribosomal protein L3P| Length = 337 Score = 65.5 bits (158), Expect = 8e-11 Identities = 35/100 (35%), Positives = 53/100 (53%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG G+ ++TP GGF +YG+V+ DY++IKG Sbjct: 254 GQMGYHQRTEFNKRILKIGSDGE--------------EVTPEGGFINYGLVRGDYVLIKG 299 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 GP KR++ LR + + + L E + ++ SK G Sbjct: 300 SVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
>RL3_ARCFU (O28354) 50S ribosomal protein L3P| Length = 331 Score = 65.1 bits (157), Expect = 1e-10 Identities = 33/100 (33%), Positives = 55/100 (55%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG+ G+ +ITP GGF HYGV++ Y+++ G Sbjct: 247 GQMGFHQRTEYNKRLIKIGENGE--------------EITPKGGFLHYGVIRTQYVLVTG 292 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 GP KR++ +R ++ + + + + + +V T+SK G Sbjct: 293 SVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330
>RL3_METTH (O26110) 50S ribosomal protein L3P| Length = 337 Score = 63.9 bits (154), Expect = 2e-10 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKD-ITPMGGFPHYGVVKADYLMIK 319 GQ G H R NK++ KIG D +E D + P GGF YG+V+ DY+MIK Sbjct: 251 GQMGYHRRTEYNKQILKIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIK 297 Query: 318 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 G GP KR+V LR+++ + + E ++ ++ T+SK G Sbjct: 298 GSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336
>RL3_METKA (Q8TY90) 50S ribosomal protein L3P| Length = 361 Score = 63.5 bits (153), Expect = 3e-10 Identities = 31/76 (40%), Positives = 45/76 (59%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG+ G+ ++TP GGF +YGVV+ DY+MI G Sbjct: 257 GQVGYHQRTEHNKRILKIGEDGE--------------EVTPRGGFVNYGVVRGDYIMIHG 302 Query: 315 CCVGPKKRVVTLRQSL 268 GPKKR++ +R ++ Sbjct: 303 TVPGPKKRLIRVRPAV 318
>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P| Length = 334 Score = 62.4 bits (150), Expect = 7e-10 Identities = 35/101 (34%), Positives = 51/101 (50%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ K+G G +ITP GGF +YG VK Y+++KG Sbjct: 250 GQMGFHQRTEYNKRILKLGSEGA--------------EITPKGGFLNYGAVKNGYVVVKG 295 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGH 193 GP KR+V LR ++ + L E+ ++ SK G+ Sbjct: 296 TVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334
>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P| Length = 338 Score = 62.0 bits (149), Expect = 9e-10 Identities = 32/73 (43%), Positives = 41/73 (56%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG+ G +ITP GFPHYGVVK Y++I+G Sbjct: 255 GQMGFHQRTEYNKRLLKIGENGA--------------EITPKSGFPHYGVVKGPYILIQG 300 Query: 315 CCVGPKKRVVTLR 277 G +KR+V LR Sbjct: 301 SVPGARKRLVVLR 313
>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)| Length = 130 Score = 57.8 bits (138), Expect = 2e-08 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 6/64 (9%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIG-----KVGQXT-HDAXTEFDRTEKDITPMGGFPHYGVVKAD 334 GQ G HHR +NKK+YKIG K G+ ++ T++D ++K I P+G F HYG V D Sbjct: 67 GQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTND 126 Query: 333 YLMI 322 ++M+ Sbjct: 127 FVML 130
>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P| Length = 351 Score = 53.1 bits (126), Expect = 4e-07 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG K+I P GGF YG+V+ Y++++G Sbjct: 268 GQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEG 313 Query: 315 CCVGPKKRVVTLRQ 274 +G KKR + LR+ Sbjct: 314 SILGSKKRPIFLRE 327
>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P| Length = 331 Score = 51.2 bits (121), Expect = 2e-06 Identities = 33/100 (33%), Positives = 48/100 (48%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G R N +V K K DA T I GGF HYG+VK DY+++ G Sbjct: 245 GQMGYQQRTISNVRVLKYSK----GEDADT--------INVRGGFLHYGLVKNDYVLLFG 292 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 GP KR++ +R ++ ++ +KL ++ SK G Sbjct: 293 SVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330
>RL3_SULTO (Q975I1) 50S ribosomal protein L3P| Length = 343 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/100 (32%), Positives = 49/100 (49%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KI +I P GGF +YG+V+ YL+I+G Sbjct: 260 GQMGYHRRTEYNKRILKISD--------------DPNEINPKGGFVNYGIVRNTYLIIEG 305 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 +G KKR + LR + + S + K+ +V+ S+ G Sbjct: 306 SIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYSQQG 343
>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P| Length = 331 Score = 50.8 bits (120), Expect = 2e-06 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKD-ITPMGGFPHYGVVKADYLMIK 319 GQ G R N +V K G ++ E D I GGF HYG VK DY+++ Sbjct: 245 GQMGFQQRTISNVRVIKYG-------------NKEEVDSINVRGGFLHYGFVKNDYVLLF 291 Query: 318 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 G G KR++ +R ++ +EE+KL+++ SK G Sbjct: 292 GSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330
>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P| Length = 334 Score = 50.4 bits (119), Expect = 3e-06 Identities = 33/100 (33%), Positives = 48/100 (48%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R +NK++ I D E TP GGFP+YG V Y ++KG Sbjct: 252 GQTGYHQRTELNKRLIDIN-------------DGDEP--TPDGGFPNYGEVDGPYTLVKG 296 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 GP++R+V R ++ S E+ ++V T+S G Sbjct: 297 SVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 334
>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P| Length = 342 Score = 49.3 bits (116), Expect = 6e-06 Identities = 32/100 (32%), Positives = 49/100 (49%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ KIG +I P GG +YG+VK YL+I+G Sbjct: 259 GQLGFHRRTEYNKRIIKIGD--------------NVNEINPAGGIVNYGLVKNTYLVIEG 304 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFG 196 +G +KR + LR + S + K+ +V+ +S+ G Sbjct: 305 SVLGSRKRPLFLRYPIRPSWSPESAP--KITYVNLASQQG 342
>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P| Length = 344 Score = 47.8 bits (112), Expect = 2e-05 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK++ I G +TP GGF YGVV++ ++M+ G Sbjct: 256 GQTGFHRRTEYNKRILMIDDDGYK--------------VTPAGGFLRYGVVRSTFVMLSG 301 Query: 315 CCVGPKKRVVTLRQSLL--KQTSRLALEEIKLKFVDTSSKFG 196 G KR + +R ++ + +L + + ++ ++ +SK G Sbjct: 302 SIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLASKQG 343
>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)| Length = 337 Score = 47.4 bits (111), Expect = 2e-05 Identities = 26/76 (34%), Positives = 37/76 (48%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R +NK++ IG+ + T D GGF +YG V Y ++KG Sbjct: 255 GQTGYHQRTELNKRLIDIGEGDEPTVD---------------GGFVNYGEVDGPYTLVKG 299 Query: 315 CCVGPKKRVVTLRQSL 268 GP KR+V R ++ Sbjct: 300 SVPGPDKRLVRFRPAV 315
>RL3_NANEQ (P60458) 50S ribosomal protein L3P| Length = 321 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/89 (28%), Positives = 41/89 (46%) Frame = -1 Query: 495 GQNGXHHRXXMNKKVYKIGKVGQXTHDAXTEFDRTEKDITPMGGFPHYGVVKADYLMIKG 316 GQ G H R NK + KIG+ + GG+ YG V +++KG Sbjct: 242 GQMGYHRRTEYNKLIIKIGE-----------------PLNVEGGWVRYGQVIGPTILLKG 284 Query: 315 CCVGPKKRVVTLRQSLLKQTSRLALEEIK 229 GP+KR++ LR+++ + +E I+ Sbjct: 285 SVPGPRKRLIILREAIRPPRKQEKVEGIE 313
>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 40.0 bits (92), Expect = 0.004 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%) Frame = +1 Query: 85 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 240 + H+ F +++T+++LR+S+ L+ I+ L G E A P++ + K DF Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233 Query: 241 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSXG 414 Q G + + LA+ TLL D LD L HTI+ ++ G V L + S G Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 40.0 bits (92), Expect = 0.004 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%) Frame = +1 Query: 85 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 240 + H+ F +++T+++LR+S+ L+ I+ L G E A P++ + K DF Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233 Query: 241 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSXG 414 Q G + + LA+ TLL D LD L HTI+ ++ G V L + S G Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 39.7 bits (91), Expect = 0.005 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Frame = +1 Query: 85 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 240 + H+ F +++T+++LR+S L+ I+ L G E A P++ + K DF Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233 Query: 241 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSXG 414 Q G + + LA+ TLL D LD L HTI+ ++ G V L + S G Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3| Length = 266 Score = 30.8 bits (68), Expect = 2.2 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = -1 Query: 345 VKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 217 VK + L++KG GPKK V +++ K S+ A++ + L+ V Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224
>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +1 Query: 130 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 279 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +1 Query: 130 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 279 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 30.4 bits (67), Expect = 2.8 Identities = 16/66 (24%), Positives = 27/66 (40%) Frame = +1 Query: 184 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVRE 363 E+ P ++ E L C RG G+ + WP+ + + G +H + Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729 Query: 364 ATHGSD 381 A HG+D Sbjct: 730 A-HGTD 734
>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 315 Score = 30.4 bits (67), Expect = 2.8 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = +1 Query: 124 LRSSSSLELAIEPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHH 291 LR S L LA+ P L L G ++T + KL G E D + T GL + GLA HH Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183 Query: 292 TLLWP 306 +L P Sbjct: 184 EVLAP 188
>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 366 Score = 30.4 bits (67), Expect = 2.8 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +1 Query: 106 KMTQLILRSSSSLELAIEPLL--LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 279 ++ +++LR+S L + ++P ++ + P+L D+ Q +T+G ++ + Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275 Query: 280 EGHHTLLWPDTASLDHQVVGLHHTIVR 360 E ++ D LD Q T++R Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302
>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 30.0 bits (66), Expect = 3.7 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Frame = +1 Query: 85 VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVGGLETAVPKLGRGVDKLELDFLQCE 249 +SH+ + + +++LRS+ + I E + P++ + K DF Q + Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237 Query: 250 TRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSXG 414 + G + + +A+ TLL D LD+ L T++ + G V L + ++ G Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDYVDQKLLKTMI-DLYGGGPVGLSTLSVNIG 291
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/55 (32%), Positives = 33/55 (60%) Frame = +1 Query: 97 RFDKMTQLILRSSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 261 R+ +T+L + +LE A++ L G L++ +L +DK+E++ L ET+GL Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567
>VIT2_PERAM (Q9BPS0) Vitellogenin 2 precursor (Vg-2)| Length = 1876 Score = 28.9 bits (63), Expect = 8.2 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Frame = -1 Query: 342 KADYLMIKGCCVGPKKRVVTLRQSL-LKQTSRLALEEIKLKFVDTSSK----FGHGRFQT 178 K Y ++ P+ V+ R++L TS++ E + F DT K + G+F+ Sbjct: 1309 KHQYAHVRVNVTMPQVPVIDYRKALEFDPTSKIQCE---VHFGDTPEKKSKVYFQGKFER 1365 Query: 177 TDEKQRFYGKLKXXXXAQYQLCHFVKTNM*YLV 79 TDE+++F + QLC + N YL+ Sbjct: 1366 TDERKKFVAE-----SDMAQLCSAQQNNKNYLL 1393
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/81 (22%), Positives = 31/81 (38%) Frame = +2 Query: 218 TNLSLISSSARREVCFSRDWRRVTTRFFGPTQHPLIIR*SAFTTP**GKPPMGVMSFSVL 397 T +++S+++R + DWR R F +QH V Sbjct: 1400 TQATIVSNASRSDP----DWRYTVVRIFAKSQH------------------------KVN 1431 Query: 398 SNSVXASWVXCPTLPILYTFL 460 S+ SW C TL +++ F+ Sbjct: 1432 DGSIFGSWKACQTLALMHDFV 1452
>CYSA_PSEPK (Q88CL2) Sulfate/thiosulfate import ATP-binding protein cysA (EC| 3.6.3.25) (Sulfate-transporting ATPase) Length = 329 Score = 28.9 bits (63), Expect = 8.2 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +1 Query: 139 SLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTAS 318 ++E+A +++ G+ + G D+ DF+ + L+EGHH L P S Sbjct: 200 AMEVADRIVVMNKGVIEQIGSPGEVYDQPANDFVYHFLGDSNRLALSEGHHVLFRPHEVS 259 Query: 319 LD-HQVVGLHHTIVRE 363 L H+ G H VR+ Sbjct: 260 LSRHETEGHHAAEVRD 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,852,812 Number of Sequences: 219361 Number of extensions: 1423957 Number of successful extensions: 3880 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 3703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3821 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
