ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRBN_PONPY (Q5R6Y2) Protein cereblon 110 3e-24
2CRBN_HUMAN (Q96SW2) Protein cereblon 110 3e-24
3CRBN_RAT (Q56AP7) Protein cereblon 107 2e-23
4CRBN_MOUSE (Q8C7D2) Protein cereblon (Protein PiL) 107 2e-23
5CRBN_XENTR (Q640S2) Protein cereblon 101 2e-21
6CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor 32 1.6
7DSBD1_PSEAE (Q9HUW5) Thiol:disulfide interchange protein dsbD 1 ... 32 2.0
8TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin) 31 3.5
9FZD10_MOUSE (Q8BKG4) Frizzled 10 precursor (Frizzled-10) (Fz-10) 31 3.5

>CRBN_PONPY (Q5R6Y2) Protein cereblon|
          Length = 429

 Score =  110 bits (275), Expect = 3e-24
 Identities = 49/94 (52%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
 Frame = -2

Query: 629 SDVVVMSSDGPLGTYVNNHGYVHATITVNNATGLDIEGDPTEEHSWFPGYAWTIASCSSC 450
           +++  +S  GP+  YVN HGYVH T+TV  A  L++ G P+ EHSWFPGYAWT+A C  C
Sbjct: 322 NEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKIC 381

Query: 449 DSNIGWLFTATKRYLHPKFFWGI-RSCQIADIVD 351
            S+IGW FTATK+ + P+ FWG+ RS  +  I D
Sbjct: 382 ASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPD 415



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>CRBN_HUMAN (Q96SW2) Protein cereblon|
          Length = 442

 Score =  110 bits (275), Expect = 3e-24
 Identities = 49/94 (52%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
 Frame = -2

Query: 629 SDVVVMSSDGPLGTYVNNHGYVHATITVNNATGLDIEGDPTEEHSWFPGYAWTIASCSSC 450
           +++  +S  GP+  YVN HGYVH T+TV  A  L++ G P+ EHSWFPGYAWT+A C  C
Sbjct: 335 NEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKIC 394

Query: 449 DSNIGWLFTATKRYLHPKFFWGI-RSCQIADIVD 351
            S+IGW FTATK+ + P+ FWG+ RS  +  I D
Sbjct: 395 ASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPD 428



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>CRBN_RAT (Q56AP7) Protein cereblon|
          Length = 445

 Score =  107 bits (268), Expect = 2e-23
 Identities = 45/83 (54%), Positives = 60/83 (72%)
 Frame = -2

Query: 629 SDVVVMSSDGPLGTYVNNHGYVHATITVNNATGLDIEGDPTEEHSWFPGYAWTIASCSSC 450
           +++  +S  GP+  YVN HGYVH T+TV  A+ L++ G P+  HSWFPGYAWTIA C  C
Sbjct: 338 NEIFSLSLCGPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKIC 397

Query: 449 DSNIGWLFTATKRYLHPKFFWGI 381
            S+IGW FTATK+ + P+ FWG+
Sbjct: 398 ASHIGWKFTATKKDMSPQKFWGL 420



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>CRBN_MOUSE (Q8C7D2) Protein cereblon (Protein PiL)|
          Length = 445

 Score =  107 bits (268), Expect = 2e-23
 Identities = 45/83 (54%), Positives = 60/83 (72%)
 Frame = -2

Query: 629 SDVVVMSSDGPLGTYVNNHGYVHATITVNNATGLDIEGDPTEEHSWFPGYAWTIASCSSC 450
           +++  +S  GP+  YVN HGYVH T+TV  A+ L++ G P+  HSWFPGYAWTIA C  C
Sbjct: 338 NEIFSLSLCGPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKIC 397

Query: 449 DSNIGWLFTATKRYLHPKFFWGI 381
            S+IGW FTATK+ + P+ FWG+
Sbjct: 398 ASHIGWKFTATKKDMSPQKFWGL 420



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>CRBN_XENTR (Q640S2) Protein cereblon|
          Length = 447

 Score =  101 bits (252), Expect = 2e-21
 Identities = 42/83 (50%), Positives = 58/83 (69%)
 Frame = -2

Query: 629 SDVVVMSSDGPLGTYVNNHGYVHATITVNNATGLDIEGDPTEEHSWFPGYAWTIASCSSC 450
           +++  +S  GP+  YVN HGYVH T+TV  A  L + G P+ E+SWFPG+AWTIA C  C
Sbjct: 338 NEIFSLSLCGPMAAYVNPHGYVHETLTVYKAFNLSLVGRPSTENSWFPGFAWTIAQCRVC 397

Query: 449 DSNIGWLFTATKRYLHPKFFWGI 381
            S++GW FTA ++ L P+ FWG+
Sbjct: 398 GSHMGWKFTAVRKDLSPQKFWGL 420



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>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor|
          Length = 684

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 520 RGIP-QRNTAGFQDTPGLSHRALPATPT*AGCSLPPRGICIR 398
           +G P +R + G    PGL  + LP  P  AG S PP GI +R
Sbjct: 97  KGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLR 138



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>DSBD1_PSEAE (Q9HUW5) Thiol:disulfide interchange protein dsbD 1 precursor (EC|
           1.8.1.8) (Protein-disulfide reductase 1) (Disulfide
           reductase 1)
          Length = 591

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
 Frame = +3

Query: 249 LSLGSKSAETGKRHNSE--------------RVCCTWRAASFFLLLSCIYNIGDLAAADP 386
           +SLG      GK+H+ E               +     A   + L+       D     P
Sbjct: 83  VSLGQVQLPAGKQHHDEYFGDTEVYYNIVDLEIPLNNPARQPYTLVVTYQGCADKGLCYP 142

Query: 387 PEEFRMQIPLGGSEQPAYVGVAGRARCDSPGVSWKPAVFLCGIPLNIKPC 536
           PE  R  I  GG+  PA    AG+   +  G       FL G+ L   PC
Sbjct: 143 PETRRFDID-GGAATPAASDAAGKGPLEHKGKRSLLFFFLAGLTLTFTPC 191



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>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)|
          Length = 1353

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 354 YNIGDLAAADPPEEFRMQIPLGGSEQPAYVGVAGRARCDSPGVSWKPAVF--LCGIPLNI 527
           +N+  L A   P E R+++    +E+PA     G A C SP V  +P VF  +  I + +
Sbjct: 17  FNLLLLGAVLKPFECRLEVTTEPAERPAVDEEGGLANC-SPPVKEQPMVFHHIYNINVPV 75

Query: 528 KPCC 539
             CC
Sbjct: 76  DSCC 79



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>FZD10_MOUSE (Q8BKG4) Frizzled 10 precursor (Frizzled-10) (Fz-10)|
          Length = 582

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 387 PEEFRMQIPLGGSEQPAYVGVAGRARCDSPG 479
           P  FR Q P    E P   G  GRA CD+PG
Sbjct: 167 PPLFRPQRPHSAQEHPLKDGGPGRAGCDNPG 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,198,817
Number of Sequences: 219361
Number of extensions: 2182708
Number of successful extensions: 5338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5338
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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