ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11a15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, comple... 44 0.62
2gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, compl... 42 2.4
3emb|AL354928.9| Human DNA sequence from clone RP11-175D17 on chr... 42 2.4
4emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in... 42 2.4
5dbj|AK147782.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 42 2.4
6emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in ... 42 2.4
7gb|AC142099.3| Mus musculus BAC clone RP24-350H4 from 6, complet... 42 2.4
8gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, com... 40 9.6
9gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome... 40 9.6
10gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K1... 40 9.6
11gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 9.6
12gb|BC055205.1| Danio rerio zgc:63690, mRNA (cDNA clone MGC:63690... 40 9.6
13gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome... 40 9.6
14emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 i... 40 9.6
15gb|U41624.1| Caenorhabditis elegans cosmid F46C8, complete sequence 40 9.6
16emb|BX511129.15| Zebrafish DNA sequence from clone RP71-68N21 in... 40 9.6
17gb|AC162933.2| Mus musculus BAC clone RP23-148J22 from chromosom... 40 9.6
18gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's ... 40 9.6
19emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chr... 40 9.6
20emb|AL157778.9| Human DNA sequence from clone RP11-485F13 on chr... 40 9.6
21emb|AL773511.5| Mouse DNA sequence from clone RP24-66J23 on chro... 40 9.6
22emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in ... 40 9.6
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
24gb|AC015555.13|AC015555 Homo sapiens chromosome 21 clone RP11-11... 40 9.6
25gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complet... 40 9.6
26gb|AF538052.1| Amoebidium parasiticum mitochondrial chromosome 0... 40 9.6
27gb|AF538047.1| Amoebidium parasiticum mitochondrial chromosome 2... 40 9.6
28ref|NM_200483.1| Danio rerio zgc:63690 (zgc:63690), mRNA 40 9.6
29dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
30dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
31dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
32emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 i... 40 9.6
33dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, ... 40 9.6
34emb|AL845284.4| Zebrafish DNA sequence from clone DKEY-277C13, c... 40 9.6
35gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E su... 40 9.6
36emb|CT025545.28| Mouse DNA sequence from clone RP24-88C18 on chr... 40 9.6
37emb|BX005391.9| Zebrafish DNA sequence from clone DKEY-91F15 in ... 40 9.6
38emb|AL954652.3| Zebrafish DNA sequence from clone CH211-239O15 i... 40 9.6
39gb|AF177539.1|AF177539 Mytilus galloprovincialis antimicrobial p... 40 9.6
40emb|CR352232.20| Zebrafish DNA sequence from clone DKEY-3L8 in l... 40 9.6
41dbj|AP005718.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.6
42dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.6
43dbj|AP001770.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.6
44dbj|AP000838.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 9.6
45emb|AL773597.29| Mouse DNA sequence from clone RP23-80A13 on chr... 40 9.6
46gb|U82828.1|HSU82828 Homo sapiens ataxia telangiectasia (ATM) ge... 40 9.6
47gb|AC001642.1|HSAC001642 Human Chromosome 11 cosmid cSRL7f12, co... 40 9.6
48dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 9.6
49dbj|AP001622.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 9.6
50dbj|AB038161.1| Homo sapiens ABCG1 gene for ABC transporter (ATP... 40 9.6 
>gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, complete sequence
          Length = 194448

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 241   taagtggttcattaataaaata 262
             ||||||||||||||||||||||
Sbjct: 86022 taagtggttcattaataaaata 86043
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>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence
          Length = 204911

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 248   ttcattaataaaatatattca 268
             |||||||||||||||||||||
Sbjct: 23581 ttcattaataaaatatattca 23601
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>emb|AL354928.9| Human DNA sequence from clone RP11-175D17 on chromosome 9 Contains
            the 5' end of the NR6A1 gene for nuclear receptor
            (subfamily 6, group A) member 1, three novel genes, the
            RPL35 gene for ribosomal protein L35, the gene for a
            hypothetical protein similar to actin related protein 2/3
            complex subunit 5 (MGC3038), the 3' end of the GOLGA1
            gene for golgi autoantigen (golgin subfamily a, 1) and
            six CpG islands, complete sequence
          Length = 176539

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 119  tctatatttctatggaaacat 139
            |||||||||||||||||||||
Sbjct: 3397 tctatatttctatggaaacat 3417
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>emb|BX548248.9| Zebrafish DNA sequence from clone DKEY-245P14 in linkage group 1,
             complete sequence
          Length = 173643

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   ttaataaaatatattcaaggg 272
             |||||||||||||||||||||
Sbjct: 57464 ttaataaaatatattcaaggg 57484
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>dbj|AK147782.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270036M20 product:methyl-CpG binding domain
            protein 4, full insert sequence
          Length = 2065

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 248  ttcattaataaaatatattca 268
            |||||||||||||||||||||
Sbjct: 1942 ttcattaataaaatatattca 1962
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>emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in linkage group 1,
             complete sequence
          Length = 97165

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 497   aagaaatcttaaatattcttt 517
             |||||||||||||||||||||
Sbjct: 26940 aagaaatcttaaatattcttt 26960
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>gb|AC142099.3| Mus musculus BAC clone RP24-350H4 from 6, complete sequence
          Length = 167731

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 248    ttcattaataaaatatattca 268
              |||||||||||||||||||||
Sbjct: 112566 ttcattaataaaatatattca 112586
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>gb|AC121147.8| Mus musculus chromosome 3, clone RP24-369O15, complete sequence
          Length = 178352

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 562   cttccatgtgagtgacaaaatttt 585
             ||||||||||||||||||| ||||
Sbjct: 80699 cttccatgtgagtgacaaattttt 80676
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>gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome 6, complete sequence
          Length = 222021

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      ttgagaatgagaaaactactcaag 28
              |||||||||||||||||| |||||
Sbjct: 125769 ttgagaatgagaaaactattcaag 125792
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>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence
          Length = 182660

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    cctctatatttctatggaaa 136
              ||||||||||||||||||||
Sbjct: 144265 cctctatatttctatggaaa 144246
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     cctctatatttctatggaaa 136
               ||||||||||||||||||||
Sbjct: 2013920 cctctatatttctatggaaa 2013939
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>gb|BC055205.1| Danio rerio zgc:63690, mRNA (cDNA clone MGC:63690 IMAGE:5916060),
            complete cds
          Length = 1809

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 496  aaagaaatcttaaatattct 515
            ||||||||||||||||||||
Sbjct: 1114 aaagaaatcttaaatattct 1133
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>gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome 6, complete sequence
          Length = 110480

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     ttgagaatgagaaaactactcaag 28
             |||||||||||||||||| |||||
Sbjct: 23945 ttgagaatgagaaaactattcaag 23968
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>emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 in linkage group 6,
             complete sequence
          Length = 194459

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   caaccacacaacctgatttc 425
             ||||||||||||||||||||
Sbjct: 53467 caaccacacaacctgatttc 53448
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>gb|U41624.1| Caenorhabditis elegans cosmid F46C8, complete sequence
          Length = 45947

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    taccaacttacattgtttca 51
             ||||||||||||||||||||
Sbjct: 24840 taccaacttacattgtttca 24821
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>emb|BX511129.15| Zebrafish DNA sequence from clone RP71-68N21 in linkage group 9,
             complete sequence
          Length = 152922

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   aaagaaatcttaaatattct 515
             ||||||||||||||||||||
Sbjct: 37223 aaagaaatcttaaatattct 37242
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>gb|AC162933.2| Mus musculus BAC clone RP23-148J22 from chromosome 12, complete
             sequence
          Length = 236972

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 665   agcaatcagccttcatcctc 684
             ||||||||||||||||||||
Sbjct: 32029 agcaatcagccttcatcctc 32048
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>gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 247105

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 500    aaatcttaaatattctttga 519
              ||||||||||||||||||||
Sbjct: 218515 aaatcttaaatattctttga 218496
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>emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chromosome 1q25.2-31.2
            Contains the 3' end of the CACNA1E gene for calcium
            channel voltage-dependent alpha 1E subunit, complete
            sequence
          Length = 167099

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 638  ttccaattctaaatccaaaa 657
            ||||||||||||||||||||
Sbjct: 3313 ttccaattctaaatccaaaa 3294
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>emb|AL157778.9| Human DNA sequence from clone RP11-485F13 on chromosome Xq21.2-22.2,
            complete sequence
          Length = 140757

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    acttgagaatgagaaaacta 22
            ||||||||||||||||||||
Sbjct: 9484 acttgagaatgagaaaacta 9503
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>emb|AL773511.5| Mouse DNA sequence from clone RP24-66J23 on chromosome 4, complete
            sequence
          Length = 130914

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 660  agcatagcaatcagccttca 679
            ||||||||||||||||||||
Sbjct: 9527 agcatagcaatcagccttca 9546
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>emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in linkage group 18, complete
              sequence
          Length = 251217

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    aatggacactacaacagtat 206
              ||||||||||||||||||||
Sbjct: 112673 aatggacactacaacagtat 112654
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 567      atgtgagtgacaaaatttta 586
                ||||||||||||||||||||
Sbjct: 27549890 atgtgagtgacaaaatttta 27549909



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 480     gatctagacagcaacaaaag 499
               ||||||||||||||||||||
Sbjct: 6105071 gatctagacagcaacaaaag 6105090
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>gb|AC015555.13|AC015555 Homo sapiens chromosome 21 clone RP11-113F1, complete sequence
          Length = 181511

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    tagtcaccagtcctgtatct 558
              ||||||||||||||||||||
Sbjct: 138150 tagtcaccagtcctgtatct 138169
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>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence
          Length = 151319

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 500   aaatcttaaatattctttga 519
             ||||||||||||||||||||
Sbjct: 40732 aaatcttaaatattctttga 40751
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>gb|AF538052.1| Amoebidium parasiticum mitochondrial chromosome 0417iay60_mtg_cplt,
           complete sequence
          Length = 1676

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 637 attccaattctaaatccaaa 656
           ||||||||||||||||||||
Sbjct: 75  attccaattctaaatccaaa 94
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>gb|AF538047.1| Amoebidium parasiticum mitochondrial chromosome
           2902riaz91_mtg_cplt, complete sequence
          Length = 3332

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 637 attccaattctaaatccaaa 656
           ||||||||||||||||||||
Sbjct: 18  attccaattctaaatccaaa 37
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>ref|NM_200483.1| Danio rerio zgc:63690 (zgc:63690), mRNA
          Length = 1809

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 496  aaagaaatcttaaatattct 515
            ||||||||||||||||||||
Sbjct: 1114 aaagaaatcttaaatattct 1133
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>dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0032M14
          Length = 146636

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 567    atgtgagtgacaaaatttta 586
              ||||||||||||||||||||
Sbjct: 119448 atgtgagtgacaaaatttta 119467
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>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0436F11
          Length = 165550

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   gatctagacagcaacaaaag 499
             ||||||||||||||||||||
Sbjct: 18890 gatctagacagcaacaaaag 18909
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>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0644A02
          Length = 144954

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    gatctagacagcaacaaaag 499
              ||||||||||||||||||||
Sbjct: 109570 gatctagacagcaacaaaag 109589
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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
              complete sequence
          Length = 181060

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    caaccacacaacctgatttc 425
              ||||||||||||||||||||
Sbjct: 164220 caaccacacaacctgatttc 164239
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>dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, map 22, complete
              sequences
          Length = 148847

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 539    tagtcaccagtcctgtatct 558
              ||||||||||||||||||||
Sbjct: 142852 tagtcaccagtcctgtatct 142833
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>emb|AL845284.4| Zebrafish DNA sequence from clone DKEY-277C13, complete sequence
          Length = 226168

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    aatggacactacaacagtat 206
              ||||||||||||||||||||
Sbjct: 116432 aatggacactacaacagtat 116413
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>gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E subunit (CACNA1E) gene, exons 7-49,
              and partial cds, alternatively spliced
          Length = 316704

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 638    ttccaattctaaatccaaaa 657
              ||||||||||||||||||||
Sbjct: 160998 ttccaattctaaatccaaaa 160979
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>emb|CT025545.28| Mouse DNA sequence from clone RP24-88C18 on chromosome 12, complete
              sequence
          Length = 266295

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 665    agcaatcagccttcatcctc 684
              ||||||||||||||||||||
Sbjct: 176615 agcaatcagccttcatcctc 176596
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>emb|BX005391.9| Zebrafish DNA sequence from clone DKEY-91F15 in linkage group 6,
             complete sequence
          Length = 162632

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 604   cattttgaactagctggaga 623
             ||||||||||||||||||||
Sbjct: 49857 cattttgaactagctggaga 49838
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>emb|AL954652.3| Zebrafish DNA sequence from clone CH211-239O15 in linkage group 4,
             complete sequence
          Length = 152900

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   ttaataaaatatattcaagg 271
             ||||||||||||||||||||
Sbjct: 83592 ttaataaaatatattcaagg 83611
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>gb|AF177539.1|AF177539 Mytilus galloprovincialis antimicrobial peptide MGD2b precursor,
            gene, complete cds
          Length = 4865

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  ttaataaaatatattcaagg 271
            ||||||||||||||||||||
Sbjct: 2856 ttaataaaatatattcaagg 2875
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>emb|CR352232.20| Zebrafish DNA sequence from clone DKEY-3L8 in linkage group 23, complete
              sequence
          Length = 206478

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     taccaacttacattgtttca 51
              ||||||||||||||||||||
Sbjct: 177232 taccaacttacattgtttca 177251
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>dbj|AP005718.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-415G10, complete
             sequence
          Length = 186104

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gttcattaataaaatatatt 266
             ||||||||||||||||||||
Sbjct: 40015 gttcattaataaaatatatt 40034
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>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   tagtcaccagtcctgtatct 558
             ||||||||||||||||||||
Sbjct: 91289 tagtcaccagtcctgtatct 91270
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>dbj|AP001770.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-27I22, complete
             sequence
          Length = 73589

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gttcattaataaaatatatt 266
             ||||||||||||||||||||
Sbjct: 13328 gttcattaataaaatatatt 13347
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>dbj|AP000838.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-21A6, complete
             sequence
          Length = 109666

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gttcattaataaaatatatt 266
             ||||||||||||||||||||
Sbjct: 87132 gttcattaataaaatatatt 87151
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>emb|AL773597.29| Mouse DNA sequence from clone RP23-80A13 on chromosome 4, complete
              sequence
          Length = 252286

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    aaccaaggtaattgtaactaggct 366
              ||||| ||||||||||||||||||
Sbjct: 121906 aaccatggtaattgtaactaggct 121883
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>gb|U82828.1|HSU82828 Homo sapiens ataxia telangiectasia (ATM) gene, complete cds
          Length = 184490

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    gttcattaataaaatatatt 266
              ||||||||||||||||||||
Sbjct: 151761 gttcattaataaaatatatt 151780
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>gb|AC001642.1|HSAC001642 Human Chromosome 11 cosmid cSRL7f12, complete sequence
          Length = 38528

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gttcattaataaaatatatt 266
             ||||||||||||||||||||
Sbjct: 25477 gttcattaataaaatatatt 25496
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 673     gccttcatcctctacctgaa 692
               ||||||||||||||||||||
Sbjct: 2921764 gccttcatcctctacctgaa 2921745
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>dbj|AP001622.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1430A10, MX1-D21S171
              region, complete sequence
          Length = 149850

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 539    tagtcaccagtcctgtatct 558
              ||||||||||||||||||||
Sbjct: 116558 tagtcaccagtcctgtatct 116539
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>dbj|AB038161.1| Homo sapiens ABCG1 gene for ABC transporter (ATP-binding cassette,
             sub-family G (WHITE), member 1), complete cds
          Length = 81000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   tagtcaccagtcctgtatct 558
             ||||||||||||||||||||
Sbjct: 39241 tagtcaccagtcctgtatct 39222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,395,213
Number of Sequences: 3902068
Number of extensions: 7395213
Number of successful extensions: 154141
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153914
Number of HSP's gapped (non-prelim): 227
length of query: 703
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 680
effective length of database: 17,143,297,704
effective search space: 11657442438720
effective search space used: 11657442438720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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