| Clone Name | rbags11a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 79.8 bits (40), Expect = 8e-13 Identities = 60/67 (89%) Strand = Plus / Minus Query: 1 accacaatgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttctta 60 |||||||||||||| |||||||||||||||||||||| ||||| |||||||| | |||| Sbjct: 952 accacaatgtctattacaatcacctttcctccctcctcgcgtgaaggaatggcatcctta 893 Query: 61 cactggg 67 || |||| Sbjct: 892 cattggg 886
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 60.0 bits (30), Expect = 7e-07 Identities = 53/61 (86%) Strand = Plus / Minus Query: 7 atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66 ||||||||||| |||||||| |||||||||| ||||| || ||||| ||||| |||||| Sbjct: 44837 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 44778 Query: 67 g 67 | Sbjct: 44777 g 44777
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 60.0 bits (30), Expect = 7e-07 Identities = 53/61 (86%) Strand = Plus / Plus Query: 7 atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66 ||||||||||| |||||||| |||||||||| ||||| || ||||| ||||| |||||| Sbjct: 50938 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 50997 Query: 67 g 67 | Sbjct: 50998 g 50998
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 7e-07 Identities = 53/61 (86%) Strand = Plus / Plus Query: 7 atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66 ||||||||||| |||||||| |||||||||| ||||| || ||||| ||||| |||||| Sbjct: 7137718 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 7137777 Query: 67 g 67 | Sbjct: 7137778 g 7137778
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 7e-07 Identities = 53/61 (86%) Strand = Plus / Plus Query: 7 atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66 ||||||||||| |||||||| |||||||||| ||||| || ||||| ||||| |||||| Sbjct: 7203689 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 7203748 Query: 67 g 67 | Sbjct: 7203749 g 7203749
>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence Length = 111620 Score = 44.1 bits (22), Expect = 0.042 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1 accacaatgtctatgacaatcacctttcct 30 ||||| |||||||||| ||||||||||||| Sbjct: 15175 accaccatgtctatgataatcacctttcct 15204
>gb|AC124103.5| Mus musculus chromosome 15, clone RP24-271M13, complete sequence Length = 177753 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tcacctttcctccctcctg 38 ||||||||||||||||||| Sbjct: 158650 tcacctttcctccctcctg 158668
>gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, complete sequence Length = 214392 Score = 38.2 bits (19), Expect = 2.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tcacctttcctccctcctg 38 ||||||||||||||||||| Sbjct: 5207 tcacctttcctccctcctg 5225
>emb|AL355526.9| Human DNA sequence from clone RP11-152L7 on chromosome 1 Contains two novel genes (IMAGE:4831124) and a CpG island, complete sequence Length = 142179 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 4 acaatgtctatgacaatcacctt 26 ||||||||| ||||||||||||| Sbjct: 100099 acaatgtctttgacaatcacctt 100121
>gb|AY127569.1| Catharanthus roseus O-methyltransferase gene, complete cds Length = 1703 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 4 acaatgtctatgacaatcacctt 26 |||||||||||||| |||||||| Sbjct: 1348 acaatgtctatgacgatcacctt 1326
>gb|AC172195.2| Rhesus Macaque BAC CH250-403C24 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 152893 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 12 tatgacaatcacctttcctccct 34 ||||| ||||||||||||||||| Sbjct: 142619 tatgaaaatcacctttcctccct 142597
>gb|AC154248.2| Mus musculus BAC clone RP24-182I14 from chromosome 13, complete sequence Length = 188542 Score = 38.2 bits (19), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 tctatgacaatcacctttcctcc 32 ||||||||||| ||||||||||| Sbjct: 81789 tctatgacaattacctttcctcc 81767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 515,315 Number of Sequences: 3902068 Number of extensions: 515315 Number of successful extensions: 37740 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37715 Number of HSP's gapped (non-prelim): 25 length of query: 67 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 46 effective length of database: 17,151,101,840 effective search space: 788950684640 effective search space used: 788950684640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)