ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 80 8e-13
2gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-07
3gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-07
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-07
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-07
6gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete s... 44 0.042
7gb|AC124103.5| Mus musculus chromosome 15, clone RP24-271M13, co... 38 2.6
8gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, co... 38 2.6
9emb|AL355526.9| Human DNA sequence from clone RP11-152L7 on chro... 38 2.6
10gb|AY127569.1| Catharanthus roseus O-methyltransferase gene, com... 38 2.6
11gb|AC172195.2| Rhesus Macaque BAC CH250-403C24 (Children's Hosp... 38 2.6
12gb|AC154248.2| Mus musculus BAC clone RP24-182I14 from chromosom... 38 2.6

>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 79.8 bits (40), Expect = 8e-13
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                       
Query: 1   accacaatgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttctta 60
           |||||||||||||| ||||||||||||||||||||||  ||||| |||||||| | ||||
Sbjct: 952 accacaatgtctattacaatcacctttcctccctcctcgcgtgaaggaatggcatcctta 893

                  
Query: 61  cactggg 67
           || ||||
Sbjct: 892 cattggg 886



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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 60.0 bits (30), Expect = 7e-07
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 7     atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66
             ||||||||||| |||||||| ||||||||||  ||||| || ||||| ||||| ||||||
Sbjct: 44837 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 44778

              
Query: 67    g 67
             |
Sbjct: 44777 g 44777



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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 60.0 bits (30), Expect = 7e-07
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 7     atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66
             ||||||||||| |||||||| ||||||||||  ||||| || ||||| ||||| ||||||
Sbjct: 50938 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 50997

              
Query: 67    g 67
             |
Sbjct: 50998 g 50998



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 7e-07
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                           
Query: 7       atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66
               ||||||||||| |||||||| ||||||||||  ||||| || ||||| ||||| ||||||
Sbjct: 7137718 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 7137777

                
Query: 67      g 67
               |
Sbjct: 7137778 g 7137778



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 7e-07
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                           
Query: 7       atgtctatgacaatcacctttcctccctcctgacgtgagggaatggcnttcttacactgg 66
               ||||||||||| |||||||| ||||||||||  ||||| || ||||| ||||| ||||||
Sbjct: 7203689 atgtctatgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgg 7203748

                
Query: 67      g 67
               |
Sbjct: 7203749 g 7203749



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>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence
          Length = 111620

 Score = 44.1 bits (22), Expect = 0.042
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 1     accacaatgtctatgacaatcacctttcct 30
             ||||| |||||||||| |||||||||||||
Sbjct: 15175 accaccatgtctatgataatcacctttcct 15204



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>gb|AC124103.5| Mus musculus chromosome 15, clone RP24-271M13, complete sequence
          Length = 177753

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     tcacctttcctccctcctg 38
              |||||||||||||||||||
Sbjct: 158650 tcacctttcctccctcctg 158668



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>gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, complete sequence
          Length = 214392

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tcacctttcctccctcctg 38
            |||||||||||||||||||
Sbjct: 5207 tcacctttcctccctcctg 5225



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>emb|AL355526.9| Human DNA sequence from clone RP11-152L7 on chromosome 1 Contains two
              novel genes (IMAGE:4831124) and a CpG island, complete
              sequence
          Length = 142179

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 4      acaatgtctatgacaatcacctt 26
              ||||||||| |||||||||||||
Sbjct: 100099 acaatgtctttgacaatcacctt 100121



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>gb|AY127569.1| Catharanthus roseus O-methyltransferase gene, complete cds
          Length = 1703

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 4    acaatgtctatgacaatcacctt 26
            |||||||||||||| ||||||||
Sbjct: 1348 acaatgtctatgacgatcacctt 1326



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>gb|AC172195.2| Rhesus Macaque  BAC CH250-403C24 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 152893

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 12     tatgacaatcacctttcctccct 34
              ||||| |||||||||||||||||
Sbjct: 142619 tatgaaaatcacctttcctccct 142597



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>gb|AC154248.2| Mus musculus BAC clone RP24-182I14 from chromosome 13, complete
             sequence
          Length = 188542

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 10    tctatgacaatcacctttcctcc 32
             ||||||||||| |||||||||||
Sbjct: 81789 tctatgacaattacctttcctcc 81767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 515,315
Number of Sequences: 3902068
Number of extensions: 515315
Number of successful extensions: 37740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37715
Number of HSP's gapped (non-prelim): 25
length of query: 67
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 46
effective length of database: 17,151,101,840
effective search space: 788950684640
effective search space used: 788950684640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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