>ref|XM_469472.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1882

 Score =  236 bits (119), Expect = 8e-59
 Identities = 293/351 (83%)
 Strand = Plus / Minus

                                                                        
Query: 350  ttgggctacaatgttttatccttcctctctaattggctccctatgttcttcctggaatca 409
            |||| |||||| ||||| ||||||||||||||| |||| ||||| |||||||| ||||| 
Sbjct: 1531 ttggactacaacgttttgtccttcctctctaatcggcttcctatattcttccttgaatcg 1472

                                                                        
Query: 410  acggggatagcagacagggataagcgctcctgccttttcagtggggattcaaatgtattc 469
            || |||||||||||||  || | |   ||||| | |||||| |||| ||| || ||||| 
Sbjct: 1471 actgggatagcagacaacgagaggtaatcctgtcgtttcagcggggtttctaaggtattg 1412

                                                                        
Query: 470  ctgctgtgcgattcaactttctgggacttttcaggagctgtcccgaatagctgcacagta 529
            |  ||| |||  | |||||||| ||| ||||||||||||| ||| ||||  || ||||| 
Sbjct: 1411 caactgcgcgtcttaactttcttggatttttcaggagctgacccaaataattgaacagtt 1352

                                                                        
Query: 530  aggcttccacatagtacaagggcagctccaatccatgcagcattgtcccatctttcacct 589
            | ||| ||||||| |||||| || || |||| |||||||||||| |||||||||||||||
Sbjct: 1351 aagctgccacataatacaagagcggcaccaacccatgcagcattatcccatctttcacct 1292

                                                                        
Query: 590  aagaggaaccaagcgaatccagctccccacactggttctagcccataaacaattgcagtt 649
            | ||| |||||||| ||| |||||||||| ||||| || ||||| ||||||||||| |||
Sbjct: 1291 aggagaaaccaagcaaatgcagctccccaaactggctcaagcccgtaaacaattgcggtt 1232

                                                               
Query: 650  tcagttgctgaaacatgggccatcgctaccatctctgcccacatgcataac 700
            |||||||||||||| |   ||||||||||||||||||||||||||||||||
Sbjct: 1231 tcagttgctgaaacgtcacccatcgctaccatctctgcccacatgcataac 1181

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Minus

                                                                            
Query: 538      acatagtacaagggcagctccaatccatgcagcattgtcccatctttcacctaagaggaa 597
                ||||| |||||| || || |||| |||||||||||| |||||||||||||||| ||| ||
Sbjct: 28177836 acataatacaagagcggcaccaacccatgcagcattatcccatctttcacctaggagaaa 28177777

                                                                            
Query: 598      ccaagcgaatccagctccccacactggttctagcccataaacaattgcagtttcagttgc 657
                |||||| ||| |||||||||| ||||| || ||||| ||||||||||| |||||||||||
Sbjct: 28177776 ccaagcaaatgcagctccccaaactggctcaagcccgtaaacaattgcggtttcagttgc 28177717

                                          
Query: 658      tgaaacatgggccatcgctaccatct 683
                |||||| |   |||||||||||||||
Sbjct: 28177716 tgaaacgtcacccatcgctaccatct 28177691



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 373      cctctctaattggctccctatgttcttcctggaatcaacggggatagcagaca 425
                |||||||||| |||| ||||| |||||||| ||||| || |||||||||||||
Sbjct: 28178221 cctctctaatcggcttcctatattcttccttgaatcgactgggatagcagaca 28178169

>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete
             sequence
          Length = 122497

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Minus

                                                                         
Query: 538   acatagtacaagggcagctccaatccatgcagcattgtcccatctttcacctaagaggaa 597
             ||||| |||||| || || |||| |||||||||||| |||||||||||||||| ||| ||
Sbjct: 28977 acataatacaagagcggcaccaacccatgcagcattatcccatctttcacctaggagaaa 28918

                                                                         
Query: 598   ccaagcgaatccagctccccacactggttctagcccataaacaattgcagtttcagttgc 657
             |||||| ||| |||||||||| ||||| || ||||| ||||||||||| |||||||||||
Sbjct: 28917 ccaagcaaatgcagctccccaaactggctcaagcccgtaaacaattgcggtttcagttgc 28858

                                       
Query: 658   tgaaacatgggccatcgctaccatct 683
             |||||| |   |||||||||||||||
Sbjct: 28857 tgaaacgtcacccatcgctaccatct 28832



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 373   cctctctaattggctccctatgttcttcctggaatcaacggggatagcagaca 425
             |||||||||| |||| ||||| |||||||| ||||| || |||||||||||||
Sbjct: 29362 cctctctaatcggcttcctatattcttccttgaatcgactgggatagcagaca 29310

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Minus

                                                                            
Query: 538      acatagtacaagggcagctccaatccatgcagcattgtcccatctttcacctaagaggaa 597
                ||||| |||||| || || |||| |||||||||||| |||||||||||||||| ||| ||
Sbjct: 28269160 acataatacaagagcggcaccaacccatgcagcattatcccatctttcacctaggagaaa 28269101

                                                                            
Query: 598      ccaagcgaatccagctccccacactggttctagcccataaacaattgcagtttcagttgc 657
                |||||| ||| |||||||||| ||||| || ||||| ||||||||||| |||||||||||
Sbjct: 28269100 ccaagcaaatgcagctccccaaactggctcaagcccgtaaacaattgcggtttcagttgc 28269041

                                          
Query: 658      tgaaacatgggccatcgctaccatct 683
                |||||| |   |||||||||||||||
Sbjct: 28269040 tgaaacgtcacccatcgctaccatct 28269015



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 373      cctctctaattggctccctatgttcttcctggaatcaacggggatagcagaca 425
                |||||||||| |||| ||||| |||||||| ||||| || |||||||||||||
Sbjct: 28269545 cctctctaatcggcttcctatattcttccttgaatcgactgggatagcagaca 28269493

>gb|AC063977.6| Homo sapiens chromosome 19 clone CTD-3187F8, complete sequence
          Length = 212752

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 439    ctgccttttcagtggggattcaa 461
              |||||||||||||||||||||||
Sbjct: 146956 ctgccttttcagtggggattcaa 146934

>gb|AC023150.5| Homo sapiens BAC clone RP11-709L9 from 4, complete sequence
          Length = 188782

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 220  tgtcacttgcatctacttgatg 241
            ||||||||||||||||||||||
Sbjct: 8127 tgtcacttgcatctacttgatg 8148

>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete
             sequence
          Length = 158364

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 158   gtccagttgatgcccctaaatggcaactaa 187
             ||||||||||||||| | ||||||||||||
Sbjct: 82831 gtccagttgatgcccattaatggcaactaa 82802

>gb|AC117673.18| Mus musculus chromosome 1, clone RP23-390I1, complete sequence
          Length = 182102

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 496   cttttcaggagctgtcccgaat 517
             ||||||||||||||||||||||
Sbjct: 54184 cttttcaggagctgtcccgaat 54163

>gb|AC005572.1| Homo sapiens chromosome 5, PAC clone 248b21 (LBNL H141), complete
             sequence
          Length = 95448

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    acacaatgttcccatttgcag 41
             |||||||||||||||||||||
Sbjct: 44866 acacaatgttcccatttgcag 44886

>emb|AL158066.12| Human DNA sequence from clone RP11-64P12 on chromosome 13q14.2-21.2
             Contains part of a novel gene, a mitochondrial ribosomal
             protein S31 (MRPS31) pseudogene and two CpG islands,
             complete sequence
          Length = 138201

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 359   aatgttttatccttcctctct 379
             |||||||||||||||||||||
Sbjct: 90403 aatgttttatccttcctctct 90383

>emb|AL137058.8| Human DNA sequence from clone RP11-78J21 on chromosome 13q32.2-33.3
             Contains 2 novel genes, a pseudogene similar to part of
             TPTE and PTEN homologous inositol lipid phosphatase
             (TPIP), a pseudogene similar to part of mitochondrial
             ribosomal protein S31 (MRPS31), the gene for a novel
             protein similar to heterogeneous nuclear ribonucleoprotein
             A1 (HNRPA1) and 3 CpG islands, complete sequence
          Length = 163390

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 359   aatgttttatccttcctctct 379
             |||||||||||||||||||||
Sbjct: 65816 aatgttttatccttcctctct 65836

>gb|AC010433.9| Homo sapiens chromosome 5 clone CTD-2202L20, complete sequence
          Length = 258929

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    acacaatgttcccatttgcag 41
             |||||||||||||||||||||
Sbjct: 96725 acacaatgttcccatttgcag 96745

>gb|AC102090.14| Mus musculus chromosome 1, clone RP23-7I3, complete sequence
          Length = 183269

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      tatttatttacatggaatct 20
              ||||||||||||||||||||
Sbjct: 104917 tatttatttacatggaatct 104936

>gb|AC124565.2| Mus musculus BAC clone RP23-143I23 from 16, complete sequence
          Length = 177251

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     agccagtaatgccacatttt 115
              ||||||||||||||||||||
Sbjct: 170375 agccagtaatgccacatttt 170394

>gb|AC122207.2| Mus musculus BAC clone RP23-88I22 from 16, complete sequence
          Length = 131490

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    agccagtaatgccacatttt 115
             ||||||||||||||||||||
Sbjct: 28139 agccagtaatgccacatttt 28158

>emb|CR707503.2|CNS0G8UZ Tetraodon nigroviridis full-length cDNA
          Length = 982

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 325 tggaggatgcattactgcct 344
           ||||||||||||||||||||
Sbjct: 411 tggaggatgcattactgcct 392

>gb|AC175689.5| Otolemur garnetti, clone XX-8157A7, complete sequence
          Length = 40468

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 609   cagctccccacactggttct 628
             ||||||||||||||||||||
Sbjct: 12173 cagctccccacactggttct 12154

>gb|AC093120.4| Mus musculus Strain C57BL6/J Chromosome 6 BAC, RP23-125A24, Complete
              Sequence, complete sequence
          Length = 187794

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    aaggccccttgttttggttt 295
              ||||||||||||||||||||
Sbjct: 132902 aaggccccttgttttggttt 132921

>emb|AL645790.8| Zebrafish DNA sequence from clone RP71-6L08 in linkage group 23
             Contains the 3' part of a novel gene similar to CELSR
             (cadherin, EGF LAG seven-pass G-type receptor), part of a
             novel gene and a CpG island, complete sequence
          Length = 165257

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   ttcaactttctgggactttt 500
             ||||||||||||||||||||
Sbjct: 81206 ttcaactttctgggactttt 81225

>emb|AL645750.9| Zebrafish DNA sequence from clone RP71-22E02 in linkage group 4
             Contains part of a novel gene similar to human CELSR1 (EGF
             LAG seven-pass G-type receptor 1 cadherin) and two CpG
             islands, complete sequence
          Length = 151797

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   ttcaactttctgggactttt 500
             ||||||||||||||||||||
Sbjct: 80531 ttcaactttctgggactttt 80550

>gb|AC078813.13| Homo sapiens 3q BAC RP11-149B11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 142000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    agccagtaatgccacatttt 115
             ||||||||||||||||||||
Sbjct: 62177 agccagtaatgccacatttt 62158

>emb|AL158801.4|CNS01RGN Human chromosome 14 DNA sequence BAC R-665C16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 205860

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   catctttcacctaagaggaa 597
             ||||||||||||||||||||
Sbjct: 25178 catctttcacctaagaggaa 25197

>emb|BX005208.11| Mouse DNA sequence from clone RP23-281F18 on chromosome 1, complete
             sequence
          Length = 101200

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tatttatttacatggaatct 20
             ||||||||||||||||||||
Sbjct: 53104 tatttatttacatggaatct 53123

>gb|AC140679.4| Mus musculus BAC clone RP24-511M8 from 1, complete sequence
          Length = 176052

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   cttttcaggagctgtcccga 515
             ||||||||||||||||||||
Sbjct: 29166 cttttcaggagctgtcccga 29185

>gb|AC140461.4| Mus musculus BAC clone RP23-11M24 from 1, complete sequence
          Length = 202209

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    cttttcaggagctgtcccga 515
              ||||||||||||||||||||
Sbjct: 191226 cttttcaggagctgtcccga 191245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,175,310
Number of Sequences: 3902068
Number of extensions: 6175310
Number of successful extensions: 108205
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108100
Number of HSP's gapped (non-prelim): 105
length of query: 704
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 681
effective length of database: 17,143,297,704
effective search space: 11674585736424
effective search space used: 11674585736424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)