ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10l09 |
|---|---|
| Clone Library Name | barley_pub |
>Y936_SYNY3 (P72861) Hypothetical protein sll0936| Length = 501 Score = 31.2 bits (69), Expect = 0.67 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%) Frame = +1 Query: 103 DGTNLDLNQIKICR---------LKISKNVXKXWGXGTP-IRYYRLALQQDGSVKMH 243 DG NLDLNQI + R + + + K GTP + YRL LQ ++ +H Sbjct: 132 DGENLDLNQIPLIRPYPGDAGKIITLGLVITKDCETGTPNVGVYRLQLQSKTTMTVH 188
>VL1_HPV40 (P36740) Major capsid protein L1| Length = 505 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = +1 Query: 97 NEDGTNLDLNQIKICRLKISKNVXKXWGXGTPIRYYRLAL 216 + + +D Q ++C L + + + WG GTP R+ L Sbjct: 141 SRENVAMDYKQTQLCMLGCTPPIGEYWGKGTPCNASRVTL 180
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Frame = +1 Query: 154 SKNVXKXWGXGT----PIRYYRLALQQDGSVKMHLRSPGLLHHNSIXTLXXFHYSMSYLF 321 +++V W G+ P+RYY + ++ S + L S + H+ S T+ SY F Sbjct: 1419 ARSVLLSWEPGSDGLSPVRYYTIQTRELPSGRWALHSASVSHNASAFTVDRLKPFTSYKF 1478 Query: 322 VIQVRN 339 ++ N Sbjct: 1479 RVKATN 1484
>VL1_HPV28 (P50791) Major capsid protein L1| Length = 502 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +1 Query: 97 NEDGTNLDLNQIKICRLKISKNVXKXWGXGTPIR 198 + D +LD Q ++C + + + + WG GTP R Sbjct: 143 SRDNISLDNKQTQLCIVGCTPPMGEHWGKGTPCR 176
>HIPK2_MESAU (Q9WUM7) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)| (Mx-interacting protein kinase) (PKM) Length = 1168 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 190 PIRYYRLALQQDGSVKMHLRSPGLLH 267 P++Y R LQQ + M L+S GL+H Sbjct: 297 PLKYIRPVLQQVATALMKLKSLGLIH 322
>HIPK2_HUMAN (Q9H2X6) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)| (hHIPk2) Length = 1198 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 190 PIRYYRLALQQDGSVKMHLRSPGLLH 267 P++Y R LQQ + M L+S GL+H Sbjct: 297 PLKYIRPVLQQVATALMKLKSLGLIH 322
>GPD1_SCHPO (P21696) Glycerol-3-phosphate dehydrogenase [NAD+] 1 (EC 1.1.1.8)| (GPD-C) (GPDH-C) Length = 385 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 253 VISGASLRNHLVVAPICSTLLGFPAPN 173 V+SGA++ N + C T +GF PN Sbjct: 170 VLSGANVANEVAREQFCETTIGFNPPN 196
>CDK7_CARAU (P51953) Cell division protein kinase 7 (EC 2.7.11.22) (EC| 2.7.11.23) (40 kDa protein kinase) (P40 MO15) (CDC2/CDK2,4-activating kinase) Length = 344 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = +3 Query: 120 LKPNQNLSTEN*QKCXQXLGA----GNPNKVLQIGATTRWFRKDAPEI 251 LKPN L EN G G+PN+V TRW+R APE+ Sbjct: 137 LKPNNLLLDENGVLKLADFGLAKAFGSPNRVYTHQVVTRWYR--APEL 182
>VL1_HPV52 (Q05138) Major capsid protein L1| Length = 529 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/34 (29%), Positives = 18/34 (52%) Frame = +1 Query: 91 LTNEDGTNLDLNQIKICRLKISKNVXKXWGXGTP 192 + N + ++D Q ++C L + + WG GTP Sbjct: 170 IDNRECLSMDYKQTQLCILGCKPPIGEHWGKGTP 203
>TCPD_ASHGO (Q75A36) T-complex protein 1 subunit delta (TCP-1-delta)| (CCT-delta) Length = 529 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/60 (28%), Positives = 27/60 (45%) Frame = +1 Query: 85 LXLTNEDGTNLDLNQIKICRLKISKNVXKXWGXGTPIRYYRLALQQDGSVKMHLRSPGLL 264 L LTNE TN+DLN I++ + K+ + + + G V+M GL+ Sbjct: 180 LSLTNEASTNVDLNDIRLVK-KVGGTIDDTEMVDGVVLTQNIVKSAGGPVRMEKAKIGLI 238
>HIPK2_MOUSE (Q9QZR5) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)| (Nuclear body-associated kinase 1) (Sialophorin tail-associated nuclear serine/threonine-protein kinase) Length = 1196 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 190 PIRYYRLALQQDGSVKMHLRSPGLLH 267 P++Y R LQQ + M L+S GL+H Sbjct: 297 PLKYIRPVLQQVATALMKLKSLGLIH 322
>VL1_HPV10 (P36732) Major capsid protein L1| Length = 531 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +1 Query: 97 NEDGTNLDLNQIKICRLKISKNVXKXWGXGTPIR 198 + D ++D Q ++C + + + + WG GTP R Sbjct: 171 SRDNISVDNKQTQLCIIGCTPPMGEHWGKGTPCR 204
>HIPK1_MOUSE (O88904) Homeodomain-interacting protein kinase 1 (EC 2.7.11.1)| (Protein kinase Myak) (Nuclear body-associated kinase 2) Length = 1210 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 190 PIRYYRLALQQDGSVKMHLRSPGLLH 267 P++Y R LQQ + M L+S GL+H Sbjct: 288 PLKYIRPILQQVATALMKLKSLGLIH 313
>HIPK1_HUMAN (Q86Z02) Homeodomain-interacting protein kinase 1 (EC 2.7.11.1)| Length = 1210 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 190 PIRYYRLALQQDGSVKMHLRSPGLLH 267 P++Y R LQQ + M L+S GL+H Sbjct: 288 PLKYIRPILQQVATALMKLKSLGLIH 313 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,329,411 Number of Sequences: 219361 Number of extensions: 562199 Number of successful extensions: 1070 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1070 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
